genome.fa.s9376.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009376.1 Hibiscus syriacus cultivar Beakdansim tig00113247_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93296

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3329--3377	20	2.5	20	96	0	89	8	20	22	48	1.75
3919--3972	20	2.8	20	88	2	83	25	18	24	31	1.97
4004--4044	20	2.0	20	100	0	82	29	12	29	29	1.93
4009--4053	20	2.2	20	92	0	72	33	8	28	28	1.87
4621--4740	58	2.1	56	81	6	134	46	7	12	33	1.70
20764--20810	23	2.0	23	100	0	94	34	17	0	48	1.47
21380--21456	31	2.5	31	78	2	82	14	25	31	28	1.95
31739--31888	50	3.0	50	91	1	239	28	10	30	31	1.90
31743--31916	50	3.5	50	88	3	235	29	9	31	29	1.89
32352--32460	31	3.5	31	78	3	103	36	8	18	36	1.81
36922--36963	16	2.6	16	92	7	68	30	14	28	26	1.95
38361--38542	60	3.0	60	89	2	267	32	12	15	39	1.84
38902--38949	22	2.1	23	85	11	64	39	2	0	58	1.10
38918--38960	15	2.8	15	92	3	68	41	0	0	58	0.98
40691--40902	20	10.6	20	77	6	178	36	24	18	19	1.94
40710--40902	60	3.2	60	79	6	205	36	24	18	20	1.95
41465--41505	20	2.0	20	95	0	73	56	17	14	12	1.68
41487--41579	33	2.8	33	85	1	114	45	22	20	11	1.84
41575--41720	19	8.1	19	71	17	123	13	23	18	45	1.84
41578--41712	33	3.9	33	85	8	171	13	22	19	44	1.85
41646--41720	20	3.8	19	81	10	82	13	22	17	46	1.82
42972--43025	24	2.2	24	93	0	90	40	20	18	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42972--43039	24	2.8	24	84	0	64	38	20	17	23	1.93
43879--44115	20	11.8	19	74	12	136	19	18	23	37	1.94
43887--44096	40	5.2	39	87	4	217	19	18	22	39	1.93
43885--44115	60	3.8	60	81	5	250	19	19	23	38	1.94
44124--44176	20	2.7	20	91	5	81	13	18	24	43	1.86
43947--44176	40	5.7	40	80	8	180	18	18	24	38	1.93
45268--45325	26	2.2	26	96	0	107	55	5	6	32	1.49
55573--55623	24	2.1	24	85	0	66	19	15	15	49	1.80
57400--57452	24	2.2	24	96	0	97	20	32	5	41	1.76
59359--59441	24	3.6	24	82	12	84	24	50	0	25	1.49
61191--61241	24	2.1	24	85	0	66	19	13	17	49	1.80
63662--63725	32	2.0	32	100	0	128	31	21	18	28	1.97
68536--68638	6	17.2	6	97	0	197	33	49	16	0	1.52
68636--68689	5	10.8	5	95	0	63	11	38	40	9	1.73
68636--68689	10	5.4	10	90	0	72	11	38	40	9	1.73
68639--68687	15	3.3	15	88	0	71	8	40	40	10	1.69
74544--74646	6	17.2	6	93	0	179	33	48	16	1	1.57
74644--74692	5	9.8	5	95	0	71	14	38	40	6	1.71
91058--91084	2	13.5	2	100	0	54	48	0	0	51	1.00

Tables:   1

The End!