Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009377.1 Hibiscus syriacus cultivar Beakdansim tig00113249_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55386

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2152--2254
6
17.2
6
93
0
179
33
48
16
1
1.57
2252--2300
5
9.8
5
95
0
71
14
38
40
6
1.71
18696--18726
2
15.5
2
100
0
62
48
0
0
51
1.00
20867--20898
12
2.8
12
95
4
57
65
0
0
34
0.93
29061--29135
30
2.6
29
82
2
78
38
28
6
26
1.81
31799--31917
29
4.1
29
71
5
114
34
7
15
42
1.75
31980--32031
17
3.4
17
67
25
51
34
7
11
46
1.69
31980--32049
29
2.4
29
90
7
106
34
8
11
45
1.71
32117--32180
29
2.2
29
94
0
110
34
7
12
45
1.71
31929--32355
137
3.1
135
87
4
581
34
10
12
42
1.77
32261--32330
29
2.4
30
92
2
115
32
7
14
45
1.72
31856--32355
275
1.9
263
83
10
661
34
10
12
42
1.77
45708--45878
60
2.8
60
79
7
159
37
5
24
32
1.78
50452--50489
18
2.1
18
95
0
67
18
21
26
34
1.96
52731--52891
60
2.7
59
87
2
225
36
18
2
42
1.64
52731--52917
60
3.1
59
82
6
218
35
19
2
42
1.65
52987--53133
59
2.5
59
82
8
174
44
3
18
34
1.66
53319--53372
20
2.7
19
75
8
63
33
31
18
16
1.93
53422--53469
20
2.4
20
82
0
60
50
20
12
16
1.78
53463--53511
20
2.5
20
96
0
89
28
28
20
22
1.98
53503--53655
20
7.6
20
81
4
155
37
23
20
18
1.94
53503--53655
40
3.8
41
88
1
229
37
23
20
18
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53503--53653
60
2.5
61
81
2
178
37
23
19
19
1.94
54217--54307
20
4.6
20
83
4
103
49
19
18
12
1.79
54217--54324
19
5.5
19
80
7
101
50
20
18
11
1.77
54320--54431
19
6.1
19
74
18
94
12
21
19
46
1.83

Tables:   1

The End!