Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009378.1 Hibiscus syriacus cultivar Beakdansim tig00113253_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80867

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
197--261
33
1.9
34
93
3
114
36
16
23
23
1.94
707--743
14
2.5
15
95
4
67
32
13
13
40
1.84
843--1225
155
2.5
155
82
3
434
37
8
21
32
1.85
15692--15736
21
2.1
21
83
0
54
31
31
24
13
1.93
17188--17402
103
2.1
103
93
0
367
27
13
22
36
1.91
17417--17489
23
3.3
23
82
3
96
23
21
23
31
1.98
22246--22471
103
2.2
103
95
1
409
25
13
24
36
1.92
22479--22539
23
2.7
23
86
0
86
21
26
26
26
1.99
22470--22547
23
3.3
23
80
1
75
24
20
21
33
1.97
23329--23388
15
3.9
14
83
16
75
85
0
15
0
0.61
23325--23388
30
2.1
31
88
8
96
84
0
15
0
0.63
26677--26725
13
3.8
14
80
19
54
20
8
0
71
1.11
26962--26993
15
2.0
17
88
11
50
21
6
0
71
1.07
28415--28483
31
2.2
31
82
10
79
62
1
0
36
1.04
28607--28676
35
2.0
35
97
0
131
24
22
12
40
1.89
30718--30828
57
1.9
57
87
0
159
33
18
25
23
1.97
36054--36138
21
4.2
21
77
7
104
32
29
20
17
1.95
46220--46517
77
3.9
77
80
3
314
39
16
18
25
1.91
46230--46517
154
1.9
153
83
4
373
38
16
18
26
1.92
55309--55381
15
5.1
15
73
9
71
53
1
1
43
1.17
55308--55391
42
2.0
42
97
0
159
52
3
2
41
1.31
55947--56012
26
2.8
23
72
14
71
45
18
16
19
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59752--59833
30
2.8
30
81
1
85
34
31
18
15
1.92
59778--59850
30
2.4
31
81
2
76
34
27
19
19
1.96
59809--59873
31
2.1
31
85
5
87
35
23
20
21
1.96
72078--72132
23
2.5
23
91
5
87
27
12
12
47
1.78
75015--75039
11
2.3
11
100
0
50
36
8
0
56
1.29
75889--75931
3
15.0
3
85
9
63
34
2
0
62
1.08
75889--75937
20
2.5
20
93
0
80
34
4
0
61
1.15
75889--75927
14
2.8
14
92
7
62
35
2
0
61
1.10
75889--75937
17
2.9
17
82
17
66
34
4
0
61
1.15
75889--75949
20
3.0
20
88
4
79
36
3
0
60
1.13
75891--75958
20
3.9
17
74
20
61
35
4
0
60
1.17
76841--76899
29
2.0
29
100
0
118
30
38
0
30
1.57
77812--77848
15
2.6
14
91
8
65
18
5
0
75
0.99
79170--79234
27
2.4
27
92
0
112
15
9
33
41
1.79
79168--79240
27
2.5
31
80
15
100
13
9
36
39
1.78
79790--79841
17
3.0
18
83
5
63
28
28
7
34
1.85

Tables:   1

The End!