genome.fa.s9380.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009380.1 Hibiscus syriacus cultivar Beakdansim tig00113263_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73371

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1810--1940	50	2.6	50	82	2	147	19	34	26	19	1.96
2142--2182	18	2.3	18	91	4	66	29	4	2	63	1.28
2282--2564	109	2.6	111	93	3	488	37	5	11	44	1.65
8857--8909	2	27.0	2	96	3	99	50	0	0	49	1.00
12164--12258	30	3.2	29	91	5	145	33	3	33	29	1.73
12461--12715	91	2.8	91	88	3	370	24	21	14	39	1.91
16141--16229	30	3.0	30	93	3	144	33	3	34	28	1.74
16222--16252	15	2.1	15	93	0	53	54	0	22	22	1.44
16434--16692	91	2.8	91	88	1	376	24	22	14	38	1.92
17212--17714	36	14.0	36	80	9	390	37	13	19	28	1.90
17214--17338	66	1.9	66	83	3	162	37	13	21	27	1.91
17212--17577	101	3.5	101	85	5	446	38	12	20	28	1.89
17626--17688	20	3.2	20	65	13	58	33	15	19	31	1.93
17383--17717	36	8.9	38	90	2	391	37	14	19	28	1.91
17672--17868	76	2.7	73	79	10	215	37	15	15	31	1.88
17840--17920	39	2.1	39	86	4	110	35	19	17	27	1.94
21965--22020	29	1.9	29	85	7	78	53	10	17	17	1.72
28336--28375	21	1.9	21	89	0	62	25	40	25	10	1.86
30638--30664	14	1.9	14	100	0	54	29	14	0	55	1.40
34253--34336	30	2.8	30	88	0	123	34	2	34	28	1.70
34550--34812	91	2.9	90	85	2	328	24	21	13	40	1.89
35327--35649	39	8.9	36	76	12	184	39	15	19	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35388--35630	72	3.2	74	81	8	226	39	15	18	26	1.90
35736--35880	76	1.9	77	88	4	222	40	14	15	29	1.87
35391--35960	39	15.0	39	77	8	347	38	15	17	28	1.90
39631--39688	29	1.9	29	86	6	80	55	10	17	17	1.69
42256--42338	29	2.8	29	92	3	130	36	2	30	31	1.71
42537--42795	91	2.8	91	88	1	367	24	22	15	37	1.93
43293--43885	36	16.6	36	79	9	352	38	14	19	27	1.90
43318--43442	66	1.9	66	83	3	162	37	15	20	26	1.92
43450--43528	29	2.8	29	92	1	133	41	10	17	30	1.83
43352--43600	130	1.9	131	87	2	367	39	12	20	27	1.88
43511--43890	39	10.1	39	88	3	356	37	15	19	28	1.91
43507--44094	78	7.8	77	79	8	353	37	15	18	28	1.91
43895--44039	76	1.9	77	90	4	231	39	14	15	30	1.88
44041--44154	60	1.9	60	83	3	149	34	18	17	29	1.94
48813--48856	18	2.4	18	81	7	54	40	6	6	45	1.57
50697--50791	30	3.2	29	89	5	136	34	2	33	29	1.70
50990--51248	91	2.8	91	88	1	376	23	22	15	38	1.92
51767--52234	36	13.0	36	79	10	340	37	14	19	28	1.91
51769--51893	66	1.9	66	83	3	162	36	13	22	27	1.92
51767--52030	101	2.6	102	84	3	354	37	13	20	28	1.91
52146--52208	20	3.2	20	65	13	58	34	15	17	31	1.92
51938--52239	39	8.0	39	90	1	343	37	15	18	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52192--52388	76	2.7	73	79	10	215	37	15	15	31	1.89
52360--52441	39	2.1	39	86	4	112	35	19	17	28	1.94
52388--52501	60	1.9	60	83	3	149	35	16	15	31	1.91
52448--52526	39	2.0	39	82	0	95	37	15	15	31	1.88
56507--56562	29	1.9	29	85	7	78	53	10	17	17	1.72
59194--59277	30	2.8	30	88	0	123	34	2	34	28	1.70
59491--59753	91	2.9	91	86	0	337	24	21	14	40	1.90
60262--60690	36	12.0	36	77	9	294	38	14	20	26	1.91
60264--60388	66	1.9	66	88	3	189	37	15	21	25	1.92
60262--60631	101	3.5	101	82	6	373	38	13	21	26	1.90
60428--60995	39	15.0	39	79	6	357	37	15	18	28	1.91
64544--64573	15	1.9	16	93	6	53	46	10	16	26	1.78
65018--65075	29	1.9	29	86	6	80	55	6	17	20	1.65
65841--65876	17	2.1	18	89	5	56	44	8	0	47	1.33
67628--67704	28	2.7	28	91	4	118	36	2	29	31	1.71
67905--68158	91	2.8	90	87	2	348	24	21	15	38	1.92
68680--68803	66	1.9	65	85	5	169	37	14	20	27	1.92
68747--68831	36	2.4	36	87	0	116	41	12	21	24	1.88
68811--68889	29	2.8	29	90	1	133	41	8	18	30	1.81
68713--68958	129	1.9	131	88	3	372	39	11	21	27	1.88
68868--69169	36	8.1	36	83	7	284	39	15	18	26	1.91
68910--69454	39	14.4	39	77	8	281	38	16	16	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69196--69401	76	2.8	73	81	8	222	39	14	13	33	1.85
69401--69514	60	1.9	60	85	3	158	35	17	16	30	1.92

Tables:   1

The End!