Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009381.1 Hibiscus syriacus cultivar Beakdansim tig00113264_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70482

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
708--748
13
3.2
13
79
6
57
43
0
0
56
0.99
710--751
12
3.4
12
83
3
57
42
0
0
57
0.99
1402--1462
26
2.3
26
80
8
61
27
1
4
65
1.22
8493--8530
18
2.2
18
85
4
51
28
10
0
60
1.30
12049--12115
1
67.0
1
81
0
80
91
0
7
1
0.49
12027--12086
13
4.7
13
79
6
52
85
0
15
0
0.61
12024--12116
14
6.6
14
78
13
93
84
0
13
1
0.67
12032--12113
6
13.5
6
79
12
69
86
0
12
1
0.63
12049--12112
10
6.6
10
89
10
98
90
0
7
1
0.51
12049--12107
9
6.3
9
92
3
91
91
0
8
0
0.42
12049--12107
19
3.2
18
92
7
100
91
0
8
0
0.42
12425--12469
16
2.8
16
83
10
56
28
8
6
55
1.56
13077--13625
82
6.7
82
96
1
901
26
13
23
36
1.92
14558--14728
94
1.8
95
85
2
229
35
17
17
29
1.93
14368--14656
113
2.6
113
97
1
535
38
13
19
28
1.90
14712--15094
114
3.3
114
85
6
477
37
12
19
30
1.89
15321--15374
3
17.7
3
88
3
81
31
1
0
66
1.02
15373--15407
14
2.4
15
95
4
63
62
0
0
37
0.95
15815--15855
19
2.2
19
86
8
57
68
7
24
0
1.15
15815--15888
16
4.8
16
75
5
71
68
8
22
0
1.15
16588--16634
13
3.4
14
81
18
55
29
0
6
63
1.19
16706--16751
13
3.5
13
82
11
58
41
0
0
58
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18475--18509
18
1.9
18
94
0
61
25
31
22
20
1.98
36158--36191
15
2.3
15
90
5
52
38
0
2
58
1.13
36190--36260
3
23.7
3
97
0
133
64
0
1
33
1.02
36395--37262
229
3.8
227
90
2
1280
29
19
13
37
1.91
36395--37262
113
7.6
113
93
2
1292
29
19
13
37
1.91
37895--38610
83
8.7
83
92
3
1135
36
23
13
26
1.92
37895--38610
165
4.3
166
94
2
1171
36
23
13
26
1.92
37895--38610
248
2.9
249
93
3
1205
36
23
13
26
1.92
39394--39433
16
2.5
16
88
8
55
52
10
7
30
1.62
39370--39409
20
2.0
20
85
5
53
52
12
7
27
1.66
52559--52592
15
2.3
15
90
5
52
38
0
2
58
1.13
52591--52653
3
21.7
3
90
6
103
63
0
1
34
1.04
52591--52653
14
4.3
15
79
16
71
63
0
1
34
1.04
52592--52654
23
2.7
23
95
4
110
63
0
1
34
1.04
55684--55792
35
3.1
35
89
3
166
43
21
0
35
1.53
56544--56583
19
2.0
20
95
4
73
45
10
5
40
1.60
56828--56940
35
3.2
35
86
5
156
34
0
22
42
1.60
59700--59751
18
2.9
18
94
2
88
53
7
17
21
1.68
60370--60474
19
5.6
19
81
4
115
40
15
5
39
1.71
60370--60460
36
2.5
36
89
3
137
40
16
5
37
1.72

Tables:   1

The End!