genome.fa.s9383.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009383.1 Hibiscus syriacus cultivar Beakdansim tig00113269_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146338

Tables:   1   2   

This is table  1  of  2  ( 122 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4981--5051	31	2.3	32	87	7	119	36	12	18	32	1.88
6083--6125	22	2.0	22	90	0	68	18	18	23	39	1.92
8259--8299	16	2.6	16	88	3	57	34	21	7	36	1.82
9293--9381	22	4.0	22	73	16	69	47	0	1	51	1.08
13391--13544	60	2.6	60	78	6	159	29	18	7	44	1.76
14582--14635	18	2.7	19	75	13	56	24	29	24	22	1.99
18273--18576	156	1.9	156	100	0	608	26	21	5	46	1.74
20920--20988	15	3.7	19	75	16	58	24	30	24	20	1.99
20958--20990	15	2.2	15	100	0	66	27	33	24	15	1.95
27247--27276	12	2.5	12	88	0	51	56	0	0	43	0.99
27519--27558	14	2.9	14	92	0	62	60	20	12	7	1.56
29591--29638	25	2.0	24	84	12	62	58	2	2	37	1.22
29632--29672	2	20.5	2	100	0	82	51	0	0	48	1.00
33962--34081	60	2.0	60	81	3	143	38	8	11	41	1.72
34298--34410	60	1.9	60	81	3	138	38	12	10	38	1.78
36006--36046	21	2.0	21	95	0	73	41	12	0	46	1.41
54378--54463	43	2.0	43	93	0	145	27	17	13	40	1.88
55329--55384	25	2.2	25	100	0	112	48	7	14	30	1.70
63130--63159	2	15.0	2	100	0	60	0	50	0	50	1.00
66356--66406	3	16.3	3	88	8	75	62	0	0	37	0.95
70074--70313	120	2.0	120	95	1	437	35	18	10	35	1.86
70771--70868	21	4.8	20	75	6	79	36	23	18	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70836--70969	20	6.7	20	81	5	153	35	26	19	18	1.95
71352--71422	33	2.2	33	92	0	115	11	22	18	47	1.80
71502--71611	21	5.8	20	74	17	108	45	18	24	11	1.83
71495--71611	41	3.1	38	81	14	145	46	17	25	11	1.81
71562--71618	14	3.7	14	75	20	60	43	22	24	8	1.81
71554--71634	33	2.5	33	95	0	144	46	22	22	8	1.78
71630--71727	19	5.7	19	70	22	81	12	21	21	44	1.84
71652--71741	14	5.7	14	69	23	63	11	22	22	44	1.84
71635--71749	33	3.5	33	96	0	212	11	21	20	46	1.81
73448--74009	93	6.1	93	99	0	1099	21	12	19	46	1.83
74057--74166	19	6.3	19	73	20	105	45	30	16	8	1.76
74074--74166	33	2.8	32	95	4	168	46	30	17	6	1.73
74162--74296	19	7.6	19	73	16	119	11	19	23	45	1.83
74184--74240	14	3.7	14	72	20	51	12	21	22	43	1.85
74167--74259	33	2.8	33	91	0	159	11	20	21	46	1.82
76218--76253	14	2.6	14	95	0	63	33	0	22	44	1.53
76360--76469	19	6.3	19	74	19	114	46	18	20	14	1.84
76397--76451	14	3.6	14	73	21	56	45	20	23	10	1.82
76378--76469	33	2.8	33	96	0	166	46	18	20	14	1.83
76484--76635	19	8.4	19	81	15	198	14	21	17	46	1.83
76465--76649	53	3.5	52	84	12	236	13	22	18	45	1.84
76484--76635	72	2.1	72	92	4	254	14	21	17	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76504--76649	33	4.2	33	81	13	195	13	21	18	46	1.83
79079--79125	24	2.0	24	87	8	69	38	21	14	25	1.92
79808--80077	20	13.5	20	87	1	290	20	17	25	37	1.94
80064--80146	21	4.0	21	73	6	78	25	16	24	33	1.96
80044--80142	42	2.4	43	77	11	100	21	18	23	37	1.94
91589--91623	18	1.9	18	88	0	52	40	2	2	54	1.30
91733--91762	16	1.9	15	93	6	51	66	3	0	30	1.07
92211--92256	25	1.9	24	86	8	67	56	2	0	41	1.11
93685--93740	11	5.3	11	75	16	55	26	0	3	69	1.04
93678--93740	20	3.0	20	77	6	63	26	0	3	69	1.03
96263--96300	2	19.0	2	100	0	76	50	0	0	50	1.00
96427--96467	4	10.0	4	85	15	57	24	2	0	73	0.96
96427--96466	21	1.9	21	90	10	64	25	2	0	72	0.97
96724--96771	25	2.0	25	83	4	62	45	6	2	45	1.40
97928--98038	30	3.7	30	76	11	120	17	7	15	60	1.56
98060--98112	24	2.2	24	86	3	72	18	18	22	39	1.92
98095--98124	12	2.5	12	88	0	51	26	16	20	36	1.93
99097--99182	41	2.0	43	86	4	122	46	2	3	47	1.32
99164--99204	19	2.2	20	91	8	68	56	2	0	41	1.13
104165--104212	21	2.3	21	78	7	53	68	2	8	20	1.26
104167--104211	19	2.2	21	84	7	58	66	2	8	22	1.30
104286--104474	20	9.2	20	73	10	132	42	21	19	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104348--104425	22	3.6	22	78	13	99	34	25	20	19	1.96
104343--104445	42	2.5	42	93	0	179	38	24	19	17	1.92
104344--104474	42	3.2	42	89	2	149	41	22	19	17	1.91
104586--104630	5	8.6	5	97	2	72	24	55	20	0	1.43
105121--105171	6	8.5	6	100	0	102	0	15	50	33	1.44
105277--105428	20	7.3	20	76	20	152	18	18	27	35	1.94
105277--105433	42	3.8	42	92	1	255	17	19	26	36	1.94
105277--105488	84	2.6	82	84	6	261	16	19	25	37	1.93
105277--105488	42	5.2	40	79	12	184	16	19	25	37	1.93
105289--105490	20	9.9	20	73	8	147	17	19	25	38	1.93
108218--108282	31	2.1	31	94	0	112	53	3	7	35	1.45
109845--109884	2	20.0	2	94	0	71	47	0	2	50	1.14
110137--110189	23	2.3	24	87	9	83	28	24	35	11	1.90
110235--110315	33	2.5	33	86	4	112	9	35	25	28	1.88
110281--110359	23	3.6	23	84	5	92	16	27	29	26	1.97
110326--110380	20	2.8	20	97	0	101	12	21	36	29	1.91
110367--110394	14	2.0	14	100	0	56	7	28	42	21	1.79
110692--110751	29	2.1	29	96	0	111	18	35	31	15	1.91
111639--111681	22	1.9	22	85	4	59	51	6	4	37	1.50
113107--113145	19	2.1	19	90	0	60	15	0	25	58	1.37
113107--113145	18	2.1	19	85	4	53	15	0	25	58	1.37
113510--113622	35	3.2	34	88	5	163	42	22	0	34	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114634--114745	35	3.2	34	87	5	145	36	0	20	41	1.59
115909--115946	18	2.1	18	100	0	76	52	10	0	36	1.36
117094--117251	21	7.8	20	70	7	77	37	24	17	19	1.93
117219--117412	20	9.6	20	76	8	76	35	25	19	19	1.95
117219--117412	40	4.8	39	82	3	199	35	25	19	19	1.95
117219--117411	60	3.2	60	83	0	251	35	25	19	19	1.95
117791--117861	33	2.2	33	92	0	115	11	22	18	47	1.80
117939--117994	20	2.8	20	81	8	69	42	17	26	12	1.85
117981--118035	14	3.6	14	73	21	56	41	23	25	9	1.83
117981--118051	33	2.2	33	94	0	124	43	25	22	8	1.81
118047--118144	19	5.7	19	70	22	81	10	24	22	42	1.84
118069--118158	14	5.7	14	74	23	81	8	25	23	42	1.83
118052--118166	33	3.5	33	95	0	212	9	24	20	45	1.81
119856--120233	92	4.1	93	98	1	726	22	12	18	46	1.83
120277--120404	19	7.3	19	73	19	116	45	28	17	8	1.78
120313--120404	32	2.8	31	88	8	130	45	28	18	7	1.76
120400--120519	19	6.6	19	78	12	126	11	19	24	45	1.83
122407--122442	14	2.6	14	95	0	63	33	0	22	44	1.53
122549--122631	19	4.6	19	80	17	113	43	18	24	14	1.87
122660--122931	19	15.4	19	81	16	336	13	21	18	46	1.83
122638--122903	51	5.0	52	92	6	437	14	22	16	45	1.84
125208--125232	12	2.1	12	100	0	50	0	28	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125407--125453	24	2.0	24	87	8	69	38	21	14	25	1.92
126130--126519	20	19.5	20	84	5	457	20	18	25	35	1.95
129619--129858	120	2.0	120	90	0	381	38	11	15	34	1.84
131933--131982	26	1.9	26	84	8	66	48	2	2	48	1.24
132385--132434	26	1.9	26	84	8	66	48	0	2	50	1.12
132048--132764	340	2.1	335	89	4	1097	44	7	5	43	1.55
133207--133261	11	4.8	11	83	14	67	50	0	0	49	1.00
133217--133257	14	3.1	14	80	20	61	51	0	0	48	1.00
133207--133257	25	2.0	25	100	0	102	50	0	0	49	1.00
139450--139497	4	12.5	4	82	8	55	22	6	25	45	1.75

Tables:   1   2