Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01009383.1 Hibiscus syriacus cultivar Beakdansim tig00113269_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 146338
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34


File 2 of 2

Found at i:139471 original size:19 final size:19

Alignment explanation


    Indices: 139447--139490  Score: 88
    Period size: 19  Copynumber: 2.3  Consensus size: 19

     139437 CCCATCCTTG

                               
     139447 TGCATGTTGTATGTATGTA
          1 TGCATGTTGTATGTATGTA

                               
     139466 TGCATGTTGTATGTATGTA
          1 TGCATGTTGTATGTATGTA

                  
     139485 TGCATG
          1 TGCATG

     139491 CATGTATTAC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   25  1.00

ACGTcount: A:0.20, C:0.07, G:0.27, T:0.45


Consensus pattern (19 bp):   
TGCATGTTGTATGTATGTA

Found at i:142996 original size:31 final size:31

Alignment explanation


    Indices: 142961--143040  Score: 124
    Period size: 31  Copynumber: 2.6  Consensus size: 31

     142951 CGATTTAATG

                                 *    *    
     142961 GTTCAGTGGTATAATTGAAACGAAAATCAAA
          1 GTTCAGTGGTATAATTGAAACAAAAAGCAAA

                            *              
     142992 GTTCAGTGGTATAATTAAAACAAAAAGCAAA
          1 GTTCAGTGGTATAATTGAAACAAAAAGCAAA

                    *         
     143023 GTTCAGTGTTATAATTGA
          1 GTTCAGTGGTATAATTGA

     143041 TAAAATTAAA


Statistics
Matches: 44,  Mismatches: 5, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  31   44  1.00

ACGTcount: A:0.44, C:0.09, G:0.19, T:0.29


Consensus pattern (31 bp):   
GTTCAGTGGTATAATTGAAACAAAAAGCAAA


Done.