Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009385.1 Hibiscus syriacus cultivar Beakdansim tig00113276_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110496

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1579--1645
22
3.0
22
95
2
116
19
26
28
25
1.99
4821--4855
18
1.9
18
88
0
52
57
8
5
28
1.52
4952--5093
60
2.4
60
76
8
155
33
26
6
34
1.82
27174--27215
20
2.0
21
86
4
59
26
33
9
30
1.88
28282--28657
121
3.0
128
93
3
613
31
12
21
34
1.91
32783--32829
14
3.4
14
74
11
51
46
4
19
29
1.68
39006--39043
16
2.4
16
83
16
53
73
5
2
18
1.14
39944--39968
10
2.5
10
100
0
50
0
12
0
88
0.53
40368--40465
3
31.7
3
83
6
124
62
1
0
36
1.02
40592--41156
76
7.5
76
97
0
1071
35
21
20
21
1.96
40592--41156
151
3.7
152
97
0
1071
35
21
20
21
1.96
40592--41156
227
2.5
227
97
0
1069
35
21
20
21
1.96
41827--41878
22
2.4
22
93
0
86
38
13
9
38
1.77
43217--43385
74
2.3
74
82
3
187
29
18
15
36
1.92
51428--51479
16
3.2
16
82
15
63
73
0
0
26
0.84
51428--51481
13
4.1
14
86
9
71
74
0
0
25
0.83
52226--52263
16
2.4
16
83
16
53
73
5
2
18
1.14
53589--53691
3
33.7
3
86
3
143
62
0
0
36
1.02
54881--54975
21
4.6
21
81
2
129
22
17
26
33
1.96
54902--55003
41
2.5
41
88
4
154
24
17
22
35
1.95
56123--56160
19
2.0
20
84
5
51
52
5
7
34
1.53
56636--56681
22
2.1
22
95
0
83
41
17
10
30
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58992--59056
2
32.5
2
90
0
103
44
0
4
50
1.22
61527--61799
136
2.0
136
100
0
546
24
19
16
40
1.91
66611--66656
24
2.0
23
83
12
58
45
4
6
43
1.49
76351--76415
29
2.2
30
97
2
123
29
0
27
43
1.56
85609--85650
2
21.0
2
100
0
84
50
0
0
50
1.00
90675--91175
128
3.9
128
97
0
939
23
24
19
32
1.97
92074--92180
40
3.0
34
81
15
133
39
3
4
52
1.40
92093--92177
40
2.1
40
93
0
143
36
2
4
56
1.33
92699--92792
21
4.5
21
86
5
127
22
27
31
18
1.97
92796--92843
21
2.3
21
85
0
60
22
12
39
25
1.89
94568--94650
34
2.5
33
82
7
98
59
1
0
39
1.05
108434--108480
23
2.0
24
84
12
62
42
17
10
29
1.82
108434--108480
24
2.0
24
83
8
60
42
17
10
29
1.82

Tables:   1

The End!