genome.fa.s9386.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009386.1 Hibiscus syriacus cultivar Beakdansim tig00113277_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77595

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1680--1722	17	2.6	17	81	3	52	76	0	18	4	0.95
1679--1728	6	8.2	6	80	12	57	78	0	18	4	0.91
2195--2249	20	2.8	20	86	2	67	49	3	12	34	1.59
6752--6807	2	31.5	2	77	22	63	48	0	0	51	1.00
6751--6807	28	2.0	28	90	6	89	47	0	0	52	1.00
7210--7262	14	3.4	17	65	20	51	26	15	11	47	1.79
8087--8122	14	2.6	14	81	0	54	36	2	5	55	1.38
8295--8377	34	2.7	32	80	15	86	50	1	2	45	1.22
8310--8426	34	3.2	36	75	20	93	48	0	2	47	1.21
8345--8433	42	2.2	41	82	11	105	50	1	2	46	1.21
8362--8407	22	2.0	23	83	8	58	47	0	2	50	1.13
8444--8487	8	5.6	8	78	5	54	63	0	0	36	0.95
8445--8474	15	2.0	15	93	0	51	63	0	0	36	0.95
8436--8496	23	2.7	23	80	14	74	60	0	0	39	0.97
8436--8499	21	2.8	23	72	15	62	60	0	0	39	0.97
8587--8626	14	2.7	15	80	7	55	55	0	0	45	0.99
8878--9085	65	3.2	63	78	12	217	30	25	18	25	1.98
17332--17535	65	3.2	64	78	10	200	30	23	17	28	1.97
20423--20479	28	2.0	28	93	0	96	38	17	10	33	1.84
21037--21080	15	2.8	16	79	3	54	45	2	0	52	1.13
23799--24057	132	2.0	132	94	0	455	22	15	17	44	1.86
32821--32852	14	2.3	15	84	15	50	34	9	12	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33074--33160	40	2.2	37	75	15	86	43	1	3	51	1.26
32963--33332	186	2.0	185	88	1	553	46	6	3	43	1.46
35316--35544	114	2.0	114	97	0	431	36	20	18	23	1.95
37813--37865	22	2.4	22	93	0	88	47	1	20	30	1.61
38554--39178	194	3.2	192	86	2	824	42	12	12	32	1.80
39477--39893	230	1.8	230	87	3	624	36	7	21	34	1.82
43965--44006	19	2.2	20	91	4	68	52	9	16	21	1.72
44590--44628	19	2.1	19	90	0	60	23	38	12	25	1.90
44527--44736	65	3.3	63	80	8	217	30	25	16	27	1.97
50517--50572	22	2.7	21	83	10	62	30	23	17	28	1.97
52099--52142	21	2.1	21	86	0	61	9	36	15	38	1.80
52482--52519	8	4.8	8	90	0	58	13	2	34	50	1.55
53180--53218	19	2.1	19	95	0	69	20	38	15	25	1.92
53117--53326	65	3.3	63	80	8	217	29	25	17	28	1.97
56731--57214	262	1.8	266	86	4	708	40	15	11	32	1.84
57432--58041	108	5.5	108	68	13	417	31	17	14	37	1.89
57239--58135	226	4.0	225	90	0	1335	31	16	13	38	1.87
60084--60152	30	2.3	30	85	5	86	56	8	14	20	1.64
61735--61801	20	3.2	23	78	19	76	67	0	1	31	1.00
61747--61798	14	3.8	14	76	21	56	67	0	0	32	0.91
62003--62223	83	2.7	83	80	2	255	24	18	32	24	1.97
62248--62536	132	2.2	131	82	8	354	41	16	16	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62248--62534	66	4.4	66	80	6	300	41	16	17	24	1.89
62577--62681	37	2.9	36	80	5	122	42	9	17	30	1.81
65814--65854	16	2.5	18	81	18	54	4	19	4	70	1.24
68050--68083	16	2.1	17	88	5	52	64	0	0	35	0.94
69650--69712	29	2.2	28	91	5	108	28	17	4	49	1.67
70235--70297	27	2.3	27	100	0	126	17	15	50	15	1.78
71902--71971	35	2.0	35	94	0	122	24	34	8	32	1.86
73539--73581	20	2.2	20	100	0	86	48	4	11	34	1.60
74297--74340	23	1.9	23	85	0	61	34	15	9	40	1.79
74279--74479	87	2.3	87	89	1	314	33	11	8	45	1.72
74875--75146	92	3.0	92	90	2	413	31	12	11	45	1.76
75110--75182	36	2.0	36	94	0	128	38	13	15	32	1.86
75517--75560	23	1.9	23	85	0	61	34	15	9	40	1.79
75499--75699	87	2.3	87	89	1	314	33	11	8	45	1.72
76096--76361	88	3.0	87	82	9	313	31	12	11	45	1.76
76326--76394	34	2.0	35	91	2	113	39	14	14	31	1.86
76713--76921	87	2.4	87	89	0	319	32	13	9	44	1.77
77229--77595	109	3.4	111	86	8	486	33	12	11	42	1.79

Tables:   1

The End!