Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009389.1 Hibiscus syriacus cultivar Beakdansim tig00113284_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54332

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1128--1200
27
2.7
26
81
12
76
73
1
8
16
1.13
1209--1302
9
9.9
9
70
18
50
76
1
4
18
1.00
1212--1241
11
2.6
11
94
5
51
80
0
0
20
0.72
1209--1300
27
3.2
28
75
10
89
77
1
4
17
0.99
1217--1303
38
2.3
38
80
9
97
75
1
4
18
1.03
1277--1365
36
2.6
34
79
15
85
65
2
2
30
1.17
1292--1388
38
2.5
37
77
14
97
63
3
1
31
1.16
1943--2054
37
3.0
37
93
0
188
31
16
13
39
1.87
4660--4701
20
2.1
20
82
8
50
69
14
0
16
1.20
4730--4762
17
1.9
17
88
11
50
24
3
21
51
1.62
7212--7236
12
2.1
12
100
0
50
24
32
16
28
1.96
9981--10040
23
2.6
23
97
0
111
20
35
26
18
1.95
15894--15933
21
1.9
21
89
0
62
25
40
25
10
1.86
21601--21639
20
1.9
20
84
5
51
33
2
7
56
1.41
23142--23178
19
2.0
18
89
5
56
21
24
24
29
1.99
25391--25468
40
2.0
40
89
0
120
21
34
23
20
1.97
32286--32322
18
2.1
17
90
5
56
56
5
2
35
1.36
34907--34974
28
2.4
28
100
0
136
48
2
13
35
1.57
37773--37818
24
1.9
24
100
0
92
36
21
13
28
1.91
40788--40849
30
2.1
30
84
3
81
41
9
3
45
1.53
41064--41092
14
2.0
15
93
6
51
55
0
3
41
1.17
44623--44665
17
2.4
18
88
7
61
11
4
6
76
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49826--49882
25
2.3
25
96
0
105
35
14
21
29
1.92
52729--52802
30
2.4
31
86
6
96
43
9
2
44
1.51

Tables:   1

The End!