Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000939.1 Hibiscus syriacus cultivar Beakdansim tig00001875_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54498

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
640--712
2
37.5
2
91
5
123
50
0
1
47
1.09
5906--5954
21
2.3
21
79
6
55
40
0
4
55
1.19
16229--16265
2
19.0
2
94
5
67
48
0
0
51
1.00
16290--16547
36
7.2
36
80
13
257
43
4
6
44
1.52
16290--16547
73
3.6
71
82
11
287
43
4
6
44
1.52
16525--16611
31
2.7
32
83
3
122
43
3
5
47
1.44
16571--16670
42
2.5
38
82
9
128
45
3
4
48
1.36
17318--17379
28
2.2
29
91
2
99
53
25
8
12
1.66
17920--17964
5
8.8
5
82
4
54
13
2
4
80
0.97
17920--17964
21
2.2
20
92
4
72
13
2
4
80
0.97
18037--18078
15
2.7
15
79
13
50
16
7
2
73
1.15
18045--18122
36
2.2
36
88
6
115
14
7
5
73
1.23
18156--18185
2
15.0
2
100
0
60
50
0
0
50
1.00
18250--18275
11
2.4
11
100
0
52
7
15
0
76
0.99
18268--18328
15
4.4
14
74
14
54
11
1
9
77
1.07
18319--18379
19
3.4
18
79
14
65
18
8
3
70
1.26
25653--25817
84
2.0
85
83
1
215
35
14
12
36
1.84
29143--29181
20
2.0
20
89
0
60
15
30
51
2
1.57
29152--29192
20
2.0
20
85
0
55
12
34
53
0
1.38
34922--35052
69
1.9
69
84
3
174
6
45
9
38
1.63
35042--35154
33
3.2
33
74
13
102
3
50
0
46
1.18
35194--35316
57
2.2
57
92
0
201
8
39
20
31
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36127--36215
33
2.7
33
92
0
142
24
31
29
14
1.95
36131--36281
80
1.9
80
86
2
214
23
30
33
12
1.92
36289--36403
29
4.0
29
94
2
196
20
29
34
14
1.93
38601--38656
29
1.9
29
82
13
71
33
3
7
55
1.45
40858--40905
14
3.4
14
77
5
60
22
18
0
58
1.39
40856--40904
15
3.3
15
77
5
64
22
18
0
59
1.38
51899--51972
31
2.4
31
83
0
103
20
24
16
39
1.92
53979--54058
42
1.9
41
87
7
117
30
16
3
50
1.62
53951--54165
86
2.5
85
77
6
204
28
18
6
46
1.72
53951--54177
43
5.4
41
72
14
158
28
18
5
47
1.72

Tables:   1

The End!