genome.fa.s9390.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009390.1 Hibiscus syriacus cultivar Beakdansim tig00113287_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73912

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3733--3794	24	2.7	23	75	14	65	38	0	0	61	0.96
3857--3899	22	2.0	21	81	4	50	58	0	2	39	1.11
27366--27579	105	2.0	105	100	0	428	35	9	9	45	1.69
31018--31064	22	2.1	23	88	4	69	48	0	0	51	1.00
39909--40012	29	3.5	29	77	17	99	46	0	1	51	1.12
40139--40177	13	2.9	13	81	7	51	61	0	0	38	0.96
40340--40386	20	2.3	20	92	0	85	31	14	8	44	1.76
40372--40444	30	2.5	29	93	2	128	31	19	5	43	1.73
40372--40444	15	4.9	15	79	3	94	31	19	5	43	1.73
40392--40456	30	2.2	30	83	2	78	35	20	7	36	1.81
40756--40807	20	2.6	20	96	0	95	38	26	13	21	1.90
40797--40895	21	4.8	20	72	6	72	36	23	19	21	1.95
40862--41055	20	9.6	20	81	5	221	35	25	19	19	1.95
40862--41055	60	3.2	60	83	0	253	35	25	19	19	1.95
41436--41506	33	2.2	33	92	0	115	11	22	18	47	1.80
41627--41681	14	3.6	14	73	21	56	40	23	27	9	1.85
41692--41809	14	7.1	18	67	25	80	10	24	21	44	1.83
41714--41803	14	5.7	14	74	23	81	8	25	23	42	1.83
41697--41811	33	3.5	33	95	0	212	9	24	20	45	1.81
43509--43890	185	2.1	186	98	0	748	22	12	18	46	1.83
43509--43888	93	4.1	93	98	0	744	22	12	18	46	1.83
43932--44060	19	7.3	19	75	17	125	45	28	17	8	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43968--44060	33	2.8	32	91	4	150	46	27	18	7	1.76
43932--44060	52	2.5	52	74	14	140	45	28	17	8	1.77
44056--44190	19	7.6	19	76	16	137	10	19	24	45	1.81
44078--44134	14	3.7	14	77	20	60	8	21	24	45	1.80
44061--44153	33	2.8	33	98	0	177	9	20	22	47	1.79
46005--46076	37	1.9	38	97	2	137	29	1	16	52	1.52
46058--46093	14	2.6	14	95	0	63	33	0	22	44	1.53
46200--46301	19	5.6	19	84	13	151	44	17	23	14	1.86
46330--46655	19	18.4	19	80	15	396	14	20	17	47	1.82
46308--46627	52	6.0	52	93	4	541	14	21	16	47	1.83
46330--46655	71	4.6	72	81	13	380	14	20	17	47	1.82
46308--46627	161	2.0	157	93	3	552	14	21	16	47	1.83
46349--46655	33	8.8	33	79	12	271	14	20	17	47	1.82
48962--48986	12	2.1	12	100	0	50	0	28	0	72	0.86
49161--49207	24	2.0	24	87	8	69	38	21	14	25	1.92
49881--50249	20	18.5	20	86	4	458	20	18	26	34	1.96
53418--53450	12	2.7	12	95	4	57	54	0	0	45	0.99
56310--56371	32	1.9	32	90	0	97	24	25	25	24	2.00

Tables:   1

The End!