genome.fa.s9393.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009393.1 Hibiscus syriacus cultivar Beakdansim tig00113294_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93263

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4647--4694	6	7.7	6	93	6	78	31	2	0	66	1.03
6232--6267	15	2.5	15	90	4	56	5	16	69	8	1.33
7599--7682	32	2.7	31	80	15	95	61	1	2	34	1.16
8767--8832	2	33.0	2	100	0	132	50	0	0	50	1.00
9473--9528	28	2.0	28	86	3	78	35	3	7	53	1.46
10832--10878	24	2.0	23	88	12	69	34	2	0	63	1.06
27864--27971	24	4.5	25	78	8	116	17	15	17	49	1.81
27864--27972	48	2.3	49	85	3	141	17	15	17	49	1.80
27882--27970	12	7.4	12	72	9	74	15	14	17	51	1.76
35379--35472	20	4.7	20	80	7	100	34	24	18	23	1.96
36067--36156	19	4.7	19	88	2	135	11	17	22	48	1.78
36067--36156	39	2.3	38	90	1	135	11	17	22	48	1.78
36086--36167	39	2.1	39	82	6	96	8	18	26	46	1.77
36180--36216	14	2.6	14	91	0	56	10	24	21	43	1.84
36129--36202	33	2.2	33	82	0	94	10	20	27	41	1.85
36219--36265	20	2.3	20	75	13	51	14	25	12	46	1.80
38325--38391	21	3.2	21	66	6	55	23	35	20	19	1.95
38273--38391	42	2.8	42	76	12	102	23	35	18	22	1.96
39749--39784	14	2.6	14	95	0	63	30	0	25	44	1.54
39963--40113	19	8.7	19	68	21	98	15	22	19	41	1.90
39967--40093	33	3.9	32	87	8	193	14	22	19	42	1.88
39960--40092	66	2.0	66	97	0	248	16	22	19	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42385--42409	12	2.1	12	100	0	50	0	28	0	72	0.86
42584--42637	24	2.2	24	90	0	81	38	20	16	24	1.92
43693--43750	20	2.9	20	94	0	98	37	22	22	17	1.93
43774--43827	14	3.5	14	77	22	63	11	20	20	48	1.80
43756--43826	33	2.2	33	84	0	88	19	19	21	39	1.93
43769--43846	33	2.4	33	91	0	120	12	23	21	42	1.87
45822--45895	19	3.8	19	80	5	67	41	21	20	16	1.90
45822--45877	20	2.9	19	84	5	76	37	21	23	17	1.94
45877--45934	14	3.9	14	79	16	71	48	25	17	8	1.75
45861--45939	32	2.4	33	95	2	142	46	24	18	10	1.80
45946--45995	19	2.6	19	93	0	91	14	22	20	44	1.86
45946--46023	19	4.1	19	86	1	84	15	23	20	41	1.90
46516--46560	18	2.5	18	92	0	81	13	13	44	28	1.81
47880--47938	20	3.0	20	87	0	73	42	22	18	16	1.89
48201--48244	22	2.0	22	95	0	79	18	15	45	20	1.85
48432--48545	20	5.7	20	82	6	122	24	18	26	30	1.98
48412--48547	41	3.3	41	79	6	159	24	17	25	33	1.97
48535--48627	20	4.5	21	78	4	100	17	24	18	39	1.91
48474--48608	41	3.3	41	82	4	139	19	21	21	37	1.94
48535--48627	41	2.3	41	100	0	186	17	24	18	39	1.91
51569--51598	2	15.0	2	92	0	51	50	3	0	46	1.18
54914--55518	322	1.9	321	87	4	905	40	9	9	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56147--56201	2	27.5	2	100	0	110	50	0	0	49	1.00
59312--59370	21	2.8	20	73	16	57	25	15	18	40	1.90
59363--59402	2	20.0	2	100	0	80	50	0	0	50	1.00
59453--59533	23	3.5	23	91	0	117	17	20	20	40	1.91
60360--60407	26	1.9	25	83	8	62	39	2	8	50	1.44
66500--66536	18	2.1	18	100	0	74	45	0	5	48	1.25
66599--66627	13	2.1	14	93	6	51	41	0	0	58	0.98
66633--66669	2	19.0	2	94	5	67	48	0	0	51	1.00
66585--66661	35	2.1	35	81	13	86	44	0	0	55	0.99
69963--70000	3	12.7	3	83	10	51	63	2	0	34	1.09
70544--70611	29	2.3	29	87	5	93	38	19	5	36	1.76
70565--70621	29	2.0	28	89	3	87	36	19	5	38	1.74
72490--72545	26	2.2	26	87	9	80	7	16	1	75	1.11
72517--72564	17	2.8	17	93	0	87	8	10	4	77	1.12
72484--72546	26	2.4	27	75	19	71	7	14	1	76	1.08
72512--72562	24	2.1	24	82	7	59	9	11	3	74	1.19
77266--77324	3	19.3	3	83	10	75	33	0	1	64	1.04
78852--78885	4	8.5	4	100	0	68	23	0	0	76	0.79
79149--79212	2	32.5	2	93	3	112	46	0	1	51	1.10
92153--92534	55	7.1	55	78	10	339	32	14	24	28	1.94
92282--92560	51	5.4	51	78	11	273	32	14	25	28	1.94
92337--92531	103	1.9	104	87	3	286	30	14	27	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92262--92607	154	2.2	158	79	9	386	31	13	23	30	1.94

Tables:   1

The End!