Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009395.1 Hibiscus syriacus cultivar Beakdansim tig00113298_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 477283
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
File 2 of 2
Found at i:395422 original size:26 final size:26
Alignment explanation
Indices: 395393--395444 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
395383 AATGAGGCTC
**
395393 AATGAACGTCATAAATGTGCATCATA
1 AATGAACGTCATAAATGCACATCATA
**
395419 AATGAGTGTCATAAATGCACATCATA
1 AATGAACGTCATAAATGCACATCATA
395445 GATTTATGAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (26 bp):
AATGAACGTCATAAATGCACATCATA
Found at i:395430 original size:13 final size:13
Alignment explanation
Indices: 395393--395435 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
395383 AATGAGGCTC
*
395393 AATGAACGTCATA
1 AATGAGCGTCATA
* *
395406 AATGTGCATCATA
1 AATGAGCGTCATA
*
395419 AATGAGTGTCATA
1 AATGAGCGTCATA
395432 AATG
1 AATG
395436 CACATCATAG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.28
Consensus pattern (13 bp):
AATGAGCGTCATA
Found at i:395710 original size:81 final size:81
Alignment explanation
Indices: 395573--395995 Score: 544
Period size: 81 Copynumber: 5.2 Consensus size: 81
395563 TTTAGTAGTG
* * * * * *
395573 ATACCTTTGAGTAAAAGATTAATGGTCTAACTGTGCACTTGACAAAAAAGTTTCAATTATGCCAG
1 ATACCTTTGAGTAAAAGATTAATAGCCTAGCTGTGCACTTGACAGAAAGGTGTCAATTATGCCAG
395638 TTAGATGAAAGGTTAA
66 TTAGATGAAAGGTTAA
*
395654 ATACCTTTGAGTAAAAGATTAATAGCCTAGCTGTGCACTTGACATAAAGGTGTCAATTATGCCAG
1 ATACCTTTGAGTAAAAGATTAATAGCCTAGCTGTGCACTTGACAGAAAGGTGTCAATTATGCCAG
* *
395719 TTAGATGATATGTTAA
66 TTAGATGAAAGGTTAA
* * * *
395735 ATACTTTTGAGTAAAAGATTAATAGCCTAGTTGTGCACTTGATAGAGAGGTGTCAATTATGCCAG
1 ATACCTTTGAGTAAAAGATTAATAGCCTAGCTGTGCACTTGACAGAAAGGTGTCAATTATGCCAG
*
395800 TTAGATGAAATGTTAA
66 TTAGATGAAAGGTTAA
* * * * *
395816 ATACCGTTGAGTAAAATATTAATAGCCTAGCTGTGCACTTGATAGAAAGGTATCAATTATGCGAG
1 ATACCTTTGAGTAAAAGATTAATAGCCTAGCTGTGCACTTGACAGAAAGGTGTCAATTATGCCAG
395881 TTAGATGAAAGGTTAA
66 TTAGATGAAAGGTTAA
* * * * * * * *
395897 ATACCTTTGAGTAAAATATTAATAGCGTATCTGTGCA-TTTAGTAGAAAAGTGTAAATTATGCAA
1 ATACCTTTGAGTAAAAGATTAATAGCCTAGCTGTGCACTTGA-CAGAAAGGTGTCAATTATGCCA
* *
395961 GTTAGATAAAAGGCTAA
65 GTTAGATGAAAGGTTAA
*
395978 ATGCCTTTCG-GTAAAAGA
1 ATACCTTT-GAGTAAAAGA
395996 ATAAAGGAAT
Statistics
Matches: 306, Mismatches: 34, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
80 3 0.01
81 302 0.99
82 1 0.00
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.31
Consensus pattern (81 bp):
ATACCTTTGAGTAAAAGATTAATAGCCTAGCTGTGCACTTGACAGAAAGGTGTCAATTATGCCAG
TTAGATGAAAGGTTAA
Found at i:397802 original size:163 final size:163
Alignment explanation
Indices: 397521--397847 Score: 496
Period size: 163 Copynumber: 2.0 Consensus size: 163
397511 GAGCTTCATA
* * * *
397521 GCCAAGACCTACTTGGCTCCTTAGCACATCTCCTAGCTACCTTCAGCTGCCAATTTGGTCACCTT
1 GCCAAGACCTACTTGGCTCCTTAGCACATCTCCTAACTACCTTAAGATGCCAATTTGGTCACCCT
*
397586 TAGTAACTTAGCTTCATTTAGTACATCGAGCTAAGTTTAGCTAGCCTTTAACTCCTCCAGTTAAG
66 TAGTAACTTAGCTTCATTTAGTACACCGAGCTAAGTTTAGCTAGCCTTTAACTCCTCCAGTTAAG
* *
397651 TTAAGCTTCCCATTTTATTCCATGAGTTTCCAT
131 ATAAGCTTCCCATTGTATTCCATGAGTTTCCAT
* * *
397684 GCCAAGACTTCCTTGGCTCCTTAGCACCTCTCCTAACTACCTTAAGATGCGC-ATTTGGTCACCC
1 GCCAAGACCTACTTGGCTCCTTAGCACATCTCCTAACTACCTTAAGATGC-CAATTTGGTCACCC
* * *
397748 TTAGTAACTTAGCTTCATTTAGTACACCGAGCTAAGTTTATCTAG-TTCTTAACTCCTCCAGTTG
65 TTAGTAACTTAGCTTCATTTAGTACACCGAGCTAAGTTTAGCTAGCCT-TTAACTCCTCCAGTTA
*
397812 AGATGAGCTTCCCATTGTATTCCATGAGTTTCCAT
129 AGATAAGCTTCCCATTGTATTCCATGAGTTTCCAT
397847 G
1 G
397848 GAGATTATGA
Statistics
Matches: 148, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
162 1 0.01
163 146 0.99
164 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.35
Consensus pattern (163 bp):
GCCAAGACCTACTTGGCTCCTTAGCACATCTCCTAACTACCTTAAGATGCCAATTTGGTCACCCT
TAGTAACTTAGCTTCATTTAGTACACCGAGCTAAGTTTAGCTAGCCTTTAACTCCTCCAGTTAAG
ATAAGCTTCCCATTGTATTCCATGAGTTTCCAT
Found at i:404973 original size:20 final size:20
Alignment explanation
Indices: 404948--404986 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
404938 TGTTTAATAT
*
404948 ATGAGATGATTACAAATGAG
1 ATGAGATGATTAAAAATGAG
404968 ATGAGATGATTAAAAATGA
1 ATGAGATGATTAAAAATGA
404987 AGGCAAGCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.23, T:0.26
Consensus pattern (20 bp):
ATGAGATGATTAAAAATGAG
Found at i:405258 original size:16 final size:16
Alignment explanation
Indices: 405237--405267 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
405227 CTTGGCCAAA
405237 TGATGATTTAGGCCTT
1 TGATGATTTAGGCCTT
405253 TGATGATTTAGGCCT
1 TGATGATTTAGGCCT
405268 CCAATGGGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.13, G:0.26, T:0.42
Consensus pattern (16 bp):
TGATGATTTAGGCCTT
Found at i:412423 original size:18 final size:18
Alignment explanation
Indices: 412400--412437 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
412390 ACAAGAATGT
412400 AAGGAATAAGAAGTATGC
1 AAGGAATAAGAAGTATGC
412418 AAGGAATAAGAAGTATGC
1 AAGGAATAAGAAGTATGC
412436 AA
1 AA
412438 ACTCTTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.53, C:0.05, G:0.26, T:0.16
Consensus pattern (18 bp):
AAGGAATAAGAAGTATGC
Found at i:417810 original size:57 final size:54
Alignment explanation
Indices: 417749--417855 Score: 142
Period size: 54 Copynumber: 1.9 Consensus size: 54
417739 GCTCATAAGC
417749 TTATTTTTAGCAAAATACTTACCATTTAAATTCCATAAGCTCATAAGCTTATTATTA
1 TTATTTTTAGCAAAATACTTACCA-TT--ATTCCATAAGCTCATAAGCTTATTATTA
** * * *
417806 TTATTTTTTTCAATATACTTGCCATTATTCCGTAAGCTCATAAGCTTATT
1 TTATTTTTAGCAAAATACTTACCATTATTCCATAAGCTCATAAGCTTATT
417856 TGCATGGTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
54 23 0.51
56 2 0.04
57 20 0.44
ACGTcount: A:0.32, C:0.17, G:0.07, T:0.45
Consensus pattern (54 bp):
TTATTTTTAGCAAAATACTTACCATTATTCCATAAGCTCATAAGCTTATTATTA
Found at i:426143 original size:22 final size:23
Alignment explanation
Indices: 426117--426171 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
426107 CAGGAAGGGG
*
426117 TATCGGTACCATGGT-AGGGTAA
1 TATCGATACCATGGTAAGGGTAA
426139 TATCGATACCATGGTAAGGG---
1 TATCGATACCATGGTAAGGGTAA
426159 TATCGATACCATG
1 TATCGATACCATG
426172 CAACATCAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 13 0.42
22 14 0.45
23 4 0.13
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (23 bp):
TATCGATACCATGGTAAGGGTAA
Found at i:426164 original size:20 final size:20
Alignment explanation
Indices: 426097--426171 Score: 77
Period size: 20 Copynumber: 3.8 Consensus size: 20
426087 GTCTAAAATT
426097 GGTATCGATA-CA-GG-AAGG
1 GGTATCGATACCATGGTAA-G
*
426115 GGTATCGGTACCATGGT-AG
1 GGTATCGATACCATGGTAAG
426134 GGTAATATCGATACCATGGTAAG
1 GG---TATCGATACCATGGTAAG
426157 GGTATCGATACCATG
1 GGTATCGATACCATG
426172 CAACATCAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 12
0.77 0.03 0.19
Matches are distributed among these distances:
18 9 0.19
19 5 0.10
20 16 0.33
22 14 0.29
23 4 0.08
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.24
Consensus pattern (20 bp):
GGTATCGATACCATGGTAAG
Found at i:426165 original size:94 final size:95
Alignment explanation
Indices: 426040--426261 Score: 304
Period size: 94 Copynumber: 2.4 Consensus size: 95
426030 ATACCGACAA
* * * *
426040 GGTAGTATCGATGCCATGGTAAGGGTATCGATACCAGGTAACATCAAGTCTAAAATTGGTATCGA
1 GGTAGTATCGATACCATGGTAAGGGTATCGATACCAGGCAACATCAAATATAAAATTGGTATCGA
**
426105 TACAGGAAGGG-GTATCGGTACCATGGTAG
66 TACAGGAAGGGAGTATCGGTACCATAATAG
* *
426134 GGTAATATCGATACCATGGTAAGGGTATCGATACCATGCAACATCAAATATAAAATTGGTATCGA
1 GGTAGTATCGATACCATGGTAAGGGTATCGATACCAGGCAACATCAAATATAAAATTGGTATCGA
* * *
426199 TACCGGAAGGGAGTATCGGTACTATAATAT
66 TACAGGAAGGGAGTATCGGTACCATAATAG
* * *
426229 AGTAGTACCGATACTATGGT-AGGGTATCGATAC
1 GGTAGTATCGATACCATGGTAAGGGTATCGATAC
426262 TACCAAGACA
Statistics
Matches: 112, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
94 82 0.73
95 30 0.27
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (95 bp):
GGTAGTATCGATACCATGGTAAGGGTATCGATACCAGGCAACATCAAATATAAAATTGGTATCGA
TACAGGAAGGGAGTATCGGTACCATAATAG
Found at i:426904 original size:135 final size:135
Alignment explanation
Indices: 426662--427095 Score: 679
Period size: 135 Copynumber: 3.2 Consensus size: 135
426652 ACAAAAATAC
* *** * * * *
426662 AATGCATATAGGTGCATTATTGGCATGAAAGGATACCATAGTTGAAATGCATATGGGTGTATTAT
1 AATGCATATGGGTGCATTATCAACATAAAAGTATACTATAGTTGAAATGCATATGGGTGCATTAT
* *
426727 CAACATAAAAGTATACTATAGTTGAAATACATATGGGTGCATTATCAACATAAAAGTATTCTATA
66 CAACATAAAAGTATGCTATAGTTGAAATGCATATGGGTGCATTATCAACATAAAAGTATTCTATA
426792 GTCAA
131 GTCAA
* *
426797 AATGCATATGGGTGCATTATCAACATAAAAATATACTATAGTTGAAATACATATGGGTGCATTAT
1 AATGCATATGGGTGCATTATCAACATAAAAGTATACTATAGTTGAAATGCATATGGGTGCATTAT
* * *
426862 CAACATAAAAGTATGTTATAGTTGAAATGTATATGGGTGCATTATCAACATAAAAGTATTCTACA
66 CAACATAAAAGTATGCTATAGTTGAAATGCATATGGGTGCATTATCAACATAAAAGTATTCTATA
426927 GTCAA
131 GTCAA
* * **
426932 AATGCATATGGGTGCATTATCAATATAAAAGTATATTATAGTTGAAATGCATATGGGCACATTAT
1 AATGCATATGGGTGCATTATCAACATAAAAGTATACTATAGTTGAAATGCATATGGGTGCATTAT
426997 CAACATAAAAGTATGCTATAGTTGAAATGCATATGGGTGCATTATCAACATAAAAGTATTCTATA
66 CAACATAAAAGTATGCTATAGTTGAAATGCATATGGGTGCATTATCAACATAAAAGTATTCTATA
*
427062 GTCGA
131 GTCAA
*
427067 AATGCATATGGGTGCATTGTCAACATAAA
1 AATGCATATGGGTGCATTATCAACATAAA
427096 TGTAGGCTAT
Statistics
Matches: 272, Mismatches: 27, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
135 272 1.00
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.31
Consensus pattern (135 bp):
AATGCATATGGGTGCATTATCAACATAAAAGTATACTATAGTTGAAATGCATATGGGTGCATTAT
CAACATAAAAGTATGCTATAGTTGAAATGCATATGGGTGCATTATCAACATAAAAGTATTCTATA
GTCAA
Found at i:427106 original size:45 final size:45
Alignment explanation
Indices: 426662--427095 Score: 607
Period size: 45 Copynumber: 9.6 Consensus size: 45
426652 ACAAAAATAC
* *** * * *
426662 AATGCATATAGGTGCATTATTGGCATGAAAGGATACCATAGTTGA
1 AATGCATATGGGTGCATTATCAACATAAAAGTATACTATAGTTGA
*
426707 AATGCATATGGGTGTATTATCAACATAAAAGTATACTATAGTTGA
1 AATGCATATGGGTGCATTATCAACATAAAAGTATACTATAGTTGA
* * **
426752 AATACATATGGGTGCATTATCAACATAAAAGTATTCTATAGTCAA
1 AATGCATATGGGTGCATTATCAACATAAAAGTATACTATAGTTGA
*
426797 AATGCATATGGGTGCATTATCAACATAAAAATATACTATAGTTGA
1 AATGCATATGGGTGCATTATCAACATAAAAGTATACTATAGTTGA
* **
426842 AATACATATGGGTGCATTATCAACATAAAAGTATGTTATAGTTGA
1 AATGCATATGGGTGCATTATCAACATAAAAGTATACTATAGTTGA
* * * **
426887 AATGTATATGGGTGCATTATCAACATAAAAGTATTCTACAGTCAA
1 AATGCATATGGGTGCATTATCAACATAAAAGTATACTATAGTTGA
* *
426932 AATGCATATGGGTGCATTATCAATATAAAAGTATATTATAGTTGA
1 AATGCATATGGGTGCATTATCAACATAAAAGTATACTATAGTTGA
** *
426977 AATGCATATGGGCACATTATCAACATAAAAGTATGCTATAGTTGA
1 AATGCATATGGGTGCATTATCAACATAAAAGTATACTATAGTTGA
* *
427022 AATGCATATGGGTGCATTATCAACATAAAAGTATTCTATAGTCGA
1 AATGCATATGGGTGCATTATCAACATAAAAGTATACTATAGTTGA
*
427067 AATGCATATGGGTGCATTGTCAACATAAA
1 AATGCATATGGGTGCATTATCAACATAAA
427096 TGTAGGCTAT
Statistics
Matches: 343, Mismatches: 46, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 343 1.00
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.31
Consensus pattern (45 bp):
AATGCATATGGGTGCATTATCAACATAAAAGTATACTATAGTTGA
Found at i:428532 original size:10 final size:10
Alignment explanation
Indices: 428515--428555 Score: 55
Period size: 10 Copynumber: 4.1 Consensus size: 10
428505 AAATATCATA
428515 ATTATATTTT
1 ATTATATTTT
*
428525 ATTGTATTTT
1 ATTATATTTT
*
428535 TTTATATTTT
1 ATTATATTTT
*
428545 ATTATAATTT
1 ATTATATTTT
428555 A
1 A
428556 AATTGGTATA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTATATTTT
Found at i:428622 original size:13 final size:15
Alignment explanation
Indices: 428598--428630 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
428588 TTATATTATA
428598 TTTGTAAATATT-TT
1 TTTGTAAATATTCTT
428612 TTTGT-AATATTCTT
1 TTTGTAAATATTCTT
428626 TTTGT
1 TTTGT
428631 CAAAACAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.21, C:0.03, G:0.09, T:0.67
Consensus pattern (15 bp):
TTTGTAAATATTCTT
Found at i:428990 original size:13 final size:14
Alignment explanation
Indices: 428974--429002 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
428964 TTTTCTACCA
428974 CACTTTT-AAAAGT
1 CACTTTTCAAAAGT
428987 CACTTTTCAAAAGT
1 CACTTTTCAAAAGT
429001 CA
1 CA
429003 TGCCAAACCG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.38, C:0.21, G:0.07, T:0.34
Consensus pattern (14 bp):
CACTTTTCAAAAGT
Found at i:430660 original size:19 final size:21
Alignment explanation
Indices: 430636--430687 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
430626 CGGCCAAGAG
*
430636 CATGTATCTTCA-TTAAAA-T
1 CATGTATTTTCATTTAAAAGT
430655 CATGTATTTTCATTTAAAAGT
1 CATGTATTTTCATTTAAAAGT
430676 CATGTATTTTCA
1 CATGTATTTTCA
430688 AAGGGGTTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 11 0.37
20 6 0.20
21 13 0.43
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (21 bp):
CATGTATTTTCATTTAAAAGT
Found at i:431840 original size:180 final size:178
Alignment explanation
Indices: 431491--431921 Score: 424
Period size: 180 Copynumber: 2.4 Consensus size: 178
431481 AGTGTCAACT
* * * * * *
431491 TTTGTAACTA-AAGTTTTAGTAACTATGACAGAAAAAATTGTCACAACAAATAATGAGATTTAGA
1 TTTGTAACTATAAGTGTTAATAATTATTACAAAAAAAATTGTCACAACAAATAATGAGATTAAG-
* * *** *
431555 TTTGTTGTGACAAATTTTGTTTGTAATTATATATTTAATTATAGTGACAAAATGTATAGTCACAA
65 TTT-TTGTAAAAAACAATGTTTGTAATTATATATTTAATTATAGTGACAAAATATATAGTCACAA
* * ** ***
431620 ATTATTATCTCCAATTTTTGGTACCAAAACAAAATCATATAGTGACATGT
129 AATATTATCTCCAATTTTTGATACCAAAACAAAATCATATAGCAACAAAA
* * *
431670 TTTGTAACTAT-A-TGCTATAATTATTGTTACAAAAAAAATTATCACAACAAATAATGAGATTCA
1 TTTGTAACTATAAGTG-T-TAATAATTATTACAAAAAAAATTGTCACAACAAATAATGAGATT-A
* * * *
431733 AGTTTTTAGTAAAAAACAATGTTTGTCATTATATGTTTTAATTATATTGACAAAATATATTGTCA
63 AGTTTTT-GTAAAAAACAATGTTTGTAATTATAT-ATTTAATTATAGTGACAAAATATATAGTCA
* * * **
431798 CAAAGAT-TTCTCTCCATATTTTTTATGCC-AAA-AATGTCATATAGCAACAAAA
126 CAAA-ATATTATCTCCA-ATTTTTGATACCAAAACAAAATCATATAGCAACAAAA
* * *
431850 TTTGTAACTATAAGTGTTAATAATTATTACAAAAAATATTGTCACAAAAAATAATGATATTAACG
1 TTTGTAACTATAAGTGTTAATAATTATTACAAAAAAAATTGTCACAACAAATAATGAGATTAA-G
431915 TTTTTGT
65 TTTTTGT
431922 GACAAATTAT
Statistics
Matches: 204, Mismatches: 37, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
178 1 0.00
179 18 0.09
180 128 0.63
181 45 0.22
182 12 0.06
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38
Consensus pattern (178 bp):
TTTGTAACTATAAGTGTTAATAATTATTACAAAAAAAATTGTCACAACAAATAATGAGATTAAGT
TTTTGTAAAAAACAATGTTTGTAATTATATATTTAATTATAGTGACAAAATATATAGTCACAAAA
TATTATCTCCAATTTTTGATACCAAAACAAAATCATATAGCAACAAAA
Found at i:432258 original size:140 final size:140
Alignment explanation
Indices: 432092--432344 Score: 409
Period size: 140 Copynumber: 1.8 Consensus size: 140
432082 AAATTCAAAT
*
432092 TTTTTTTGTAATAAATTATTTTTTGTACTTATATATTTTAATAATTATGAAAAATTATACTATCA
1 TTTTTTGGTAATAAATTATTTTTTGTACTTATATATTTTAATAATTATGAAAAATTATACTATCA
*
432157 GAAATATTTCTCCCTATTTTTTAGTGTCAAAAATATTATATAGTAACAAAATATATTGTAATTAA
66 GAAATATTTCTCCATATTTTTTAGTG-CAAAAATATTATATAGTAACAAAATATATTGTAATTAA
432222 TTATTTTTAAG
130 TTATTTTTAAG
* * * *
432233 TTTTTTGGTAATTAATTA-TTTTTGTAGTTATATATTTTAATCATTATGAAAACTTATACTATCA
1 TTTTTTGGTAATAAATTATTTTTTGTACTTATATATTTTAATAATTATGAAAAATTATACTATCA
* * *
432297 GAAATATTTCTCCATATTTTTTGGTGCAAAAATGTTATATAGTGACAA
66 GAAATATTTCTCCATATTTTTTAGTGCAAAAATATTATATAGTAACAA
432345 GTTTTGTAAC
Statistics
Matches: 103, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
139 20 0.19
140 67 0.65
141 16 0.16
ACGTcount: A:0.36, C:0.07, G:0.08, T:0.48
Consensus pattern (140 bp):
TTTTTTGGTAATAAATTATTTTTTGTACTTATATATTTTAATAATTATGAAAAATTATACTATCA
GAAATATTTCTCCATATTTTTTAGTGCAAAAATATTATATAGTAACAAAATATATTGTAATTAAT
TATTTTTAAG
Found at i:432450 original size:21 final size:21
Alignment explanation
Indices: 432384--432450 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 21
432374 TGTAGAAAAA
* *
432384 TTTTCATAAAAAAATTTAT-T
1 TTTTAATAAAAAAAATTATGT
*
432404 TTTTAATTAAAAAAAGATTCAAGT
1 TTTTAA-TAAAAAAA-ATT-ATGT
*
432428 TTTTTATAAAAAAAATTATGT
1 TTTTAATAAAAAAAATTATGT
432449 TT
1 TT
432451 GAAGTTATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
20 5 0.13
21 13 0.34
22 5 0.13
23 9 0.24
24 6 0.16
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.46
Consensus pattern (21 bp):
TTTTAATAAAAAAAATTATGT
Found at i:433393 original size:17 final size:18
Alignment explanation
Indices: 433371--433410 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
433361 CTCTATTTTA
*
433371 TTTTAAA-GGAAATTGAT
1 TTTTAAAGGGAAACTGAT
*
433388 TTTTAAAGGGAAACTGGT
1 TTTTAAAGGGAAACTGAT
433406 TTTTA
1 TTTTA
433411 GAAAAATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.35, C:0.03, G:0.20, T:0.42
Consensus pattern (18 bp):
TTTTAAAGGGAAACTGAT
Found at i:435966 original size:42 final size:42
Alignment explanation
Indices: 435910--436006 Score: 97
Period size: 42 Copynumber: 2.3 Consensus size: 42
435900 TTATGTTTTT
* * *
435910 CTTTATAGGGTTATGATTTA-AGATTAGGGGTTTAATACTTAAG
1 CTTTA-AGGTTTATGATTTAGAGATTA-GGATTTAAAACTTAAG
* * * *
435953 CTTTAATGTTTATGGTTTAGGGCTTAGGATTTAAAACTTAAG
1 CTTTAAGGTTTATGATTTAGAGATTAGGATTTAAAACTTAAG
*
435995 GTTTAAGGTTTA
1 CTTTAAGGTTTA
436007 GAGGTAAGGT
Statistics
Matches: 44, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
42 35 0.80
43 9 0.20
ACGTcount: A:0.29, C:0.05, G:0.23, T:0.43
Consensus pattern (42 bp):
CTTTAAGGTTTATGATTTAGAGATTAGGATTTAAAACTTAAG
Found at i:436668 original size:28 final size:28
Alignment explanation
Indices: 436637--436703 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 28
436627 AACAATATAG
*
436637 CCTAAATCCTATATTTTAAACCCTAAAC
1 CCTAAATCCTATATTCTAAACCCTAAAC
* *
436665 CCTAAA-CCATATATTCTAAATCTTAAAC
1 CCTAAATCC-TATATTCTAAACCCTAAAC
* *
436693 TCTAATTCCTA
1 CCTAAATCCTA
436704 AACTCTAACC
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
27 2 0.06
28 28 0.88
29 2 0.06
ACGTcount: A:0.39, C:0.27, G:0.00, T:0.34
Consensus pattern (28 bp):
CCTAAATCCTATATTCTAAACCCTAAAC
Found at i:436696 original size:14 final size:14
Alignment explanation
Indices: 436638--436711 Score: 51
Period size: 14 Copynumber: 5.3 Consensus size: 14
436628 ACAATATAGC
* *
436638 CTAAATCCTATATT
1 CTAAATCCTAAACT
* * *
436652 TTAAACCCTAAACC
1 CTAAATCCTAAACT
* *
436666 CTAAA-CCATATATT
1 CTAAATCC-TAAACT
*
436680 CTAAATCTTAAACT
1 CTAAATCCTAAACT
*
436694 CTAATTCCTAAACT
1 CTAAATCCTAAACT
436708 CTAA
1 CTAA
436712 CCATAATAAG
Statistics
Matches: 44, Mismatches: 14, Indels: 4
0.71 0.23 0.06
Matches are distributed among these distances:
13 2 0.05
14 41 0.93
15 1 0.02
ACGTcount: A:0.41, C:0.26, G:0.00, T:0.34
Consensus pattern (14 bp):
CTAAATCCTAAACT
Found at i:444953 original size:17 final size:17
Alignment explanation
Indices: 444931--444973 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
444921 TTTAACGGAC
*
444931 TTTAACACTTTCTAGTT
1 TTTAACACCTTCTAGTT
444948 TTTAACACCTTCTAGTT
1 TTTAACACCTTCTAGTT
444965 TTTAACACC
1 TTTAACACC
444974 AATTTCGGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.05, T:0.47
Consensus pattern (17 bp):
TTTAACACCTTCTAGTT
Found at i:451225 original size:396 final size:396
Alignment explanation
Indices: 450493--451287 Score: 1554
Period size: 396 Copynumber: 2.0 Consensus size: 396
450483 TCTCTACTCA
450493 ACCTTAGAAAACCTCTACAATCAAAACTCTAATCAAATTTCATCAAATCACAATATTCCCTAATT
1 ACCTTAGAAAACCTCTACAATCAAAACTCTAATCAAATTTCATCAAATCACAATATTCCCTAATT
450558 TTTAGGGTTAGTTCAAAACTGCCAAATGCATTTCTAGGAGGTTTGATCATGATTTATTCATCAAA
66 TTTAGGGTTAGTTCAAAACTGCCAAATGCATTTCTAGGAGGTTTGATCATGATTTATTCATCAAA
450623 CAAGCTTGGAAATTATTCTACAACCTCAAAAACCTCAAATACATCACCAATTCCATAAACCCTAA
131 CAAGCTTGGAAATTATTCTACAACCTCAAAAACCTCAAATACATCACCAATTCCATAAACCCTAA
450688 TATGAACATAAACCCTAAAACTTGTGATATTTGAACTCAAGAAGTTTAGCATGCAATAATGGTAC
196 TATGAACATAAACCCTAAAACTTGTGATATTTGAACTCAAGAAGTTTAGCATGCAATAATGGTAC
*
450753 CAAATGATAGAGCTCATCGAATAGAACAATTTTCTACTTCACGTCTTAATCCAAAATTTCAATCT
261 CAAATGATAGAGCTCATCGAATAGAACAATTTTCTACTTCACGTCTTAATCCAAAATTTCAATAT
450818 TACCATTTTTCATCCAATAATCCATATTAAACATGAAAATTATTTCTCAAATCCAATCGTCCATA
326 TACCATTTTTCATCCAATAATCCATATTAAACATGAAAATTATTTCTCAAATCCAATCGTCCATA
450883 TTATTT
391 TTATTT
450889 ACCTTAGAAAACCTCTACAATCAAAACTCTAATCAAATTTCATCAAATCACAATATTCCCTAATT
1 ACCTTAGAAAACCTCTACAATCAAAACTCTAATCAAATTTCATCAAATCACAATATTCCCTAATT
450954 TTTAGGGTTAGTTCAAAACTGCCAAATGCATTTCTAGGAGGTTTGATCATGATTTATTCATCAAA
66 TTTAGGGTTAGTTCAAAACTGCCAAATGCATTTCTAGGAGGTTTGATCATGATTTATTCATCAAA
* *
451019 CAAGCTTGGAAATTATTCTACAACCTCAGAAACCTCAAATACATCATCAATTCCATAAACCCTAA
131 CAAGCTTGGAAATTATTCTACAACCTCAAAAACCTCAAATACATCACCAATTCCATAAACCCTAA
451084 TATGAACATAAACCCTAAAACTTGTGATATTTGAACTCAAGAAGTTTAGCATGCAATAATGGTAC
196 TATGAACATAAACCCTAAAACTTGTGATATTTGAACTCAAGAAGTTTAGCATGCAATAATGGTAC
*
451149 CAAATGATATAGCTCATCGAATAGAACAATTTTCTACTTCACGTCTTAATCCAAAATTTCAATAT
261 CAAATGATAGAGCTCATCGAATAGAACAATTTTCTACTTCACGTCTTAATCCAAAATTTCAATAT
451214 TACCATTTTTCATCCAATAATCCATATTAAACATGAAAATTATTTCTCAAATCCAATCGTCCATA
326 TACCATTTTTCATCCAATAATCCATATTAAACATGAAAATTATTTCTCAAATCCAATCGTCCATA
451279 TTATTT
391 TTATTT
451285 ACC
1 ACC
451288 GTCGTGTCAA
Statistics
Matches: 395, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
396 395 1.00
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (396 bp):
ACCTTAGAAAACCTCTACAATCAAAACTCTAATCAAATTTCATCAAATCACAATATTCCCTAATT
TTTAGGGTTAGTTCAAAACTGCCAAATGCATTTCTAGGAGGTTTGATCATGATTTATTCATCAAA
CAAGCTTGGAAATTATTCTACAACCTCAAAAACCTCAAATACATCACCAATTCCATAAACCCTAA
TATGAACATAAACCCTAAAACTTGTGATATTTGAACTCAAGAAGTTTAGCATGCAATAATGGTAC
CAAATGATAGAGCTCATCGAATAGAACAATTTTCTACTTCACGTCTTAATCCAAAATTTCAATAT
TACCATTTTTCATCCAATAATCCATATTAAACATGAAAATTATTTCTCAAATCCAATCGTCCATA
TTATTT
Found at i:456550 original size:45 final size:45
Alignment explanation
Indices: 456398--456557 Score: 234
Period size: 45 Copynumber: 3.6 Consensus size: 45
456388 GGAATATGGT
* * *
456398 TTATGGAA-TAATGGCAAGTGTATTGGTAAAATAAGCTTACGAGC
1 TTATGGAACAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGC
* *
456442 TTATGGAACAAATGGTAACTATATTGGTAAAATAAGCTAACGAGC
1 TTATGGAACAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGC
456487 TTATGGAACAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGC
1 TTATGGAACAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGC
* *
456532 TTAT-GAGATAAATGGTAAGTAGATTG
1 TTATGGA-ACAAATGGTAAGTATATTG
456558 ATAAGAAATT
Statistics
Matches: 105, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
44 10 0.10
45 95 0.90
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.29
Consensus pattern (45 bp):
TTATGGAACAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGC
Found at i:465452 original size:22 final size:22
Alignment explanation
Indices: 465427--465472 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
465417 TGGGTATGAT
465427 CACCAGTAGAAACTAGTAAGAC
1 CACCAGTAGAAACTAGTAAGAC
*
465449 CACCAGTAGAAACTTGTAAGAC
1 CACCAGTAGAAACTAGTAAGAC
465471 CA
1 CA
465473 TAGAAACTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.43, C:0.24, G:0.17, T:0.15
Consensus pattern (22 bp):
CACCAGTAGAAACTAGTAAGAC
Found at i:473333 original size:45 final size:44
Alignment explanation
Indices: 473278--473707 Score: 547
Period size: 45 Copynumber: 9.6 Consensus size: 44
473268 ACAGCCTACA
* * *
473278 TTTT-TGTTGATAATACACCCATATGTATTTCGACTATATAATAC
1 TTTTATGTTGATAATGCACCCATATGCATTTCAACTATAT-ATAC
* * *
473322 TTTTATGTTGATTATGCACCCATATGCATTTCAACTGTAGCATAC
1 TTTTATGTTGATAATGCACCCATATGCATTTCAACTATA-TATAC
*
473367 TTTTATGTTGATAATGCACCCATATGCATTTCAACTGTAGTATAC
1 TTTTATGTTGATAATGCACCCATATGCATTTCAACTATA-TATAC
** *
473412 TTTTATGTTGATAATGCACCCATATGCATTTTGACTATAGAATAC
1 TTTTATGTTGATAATGCACCCATATGCATTTCAACTATA-TATAC
*
473457 TTTTATGTTGATAATGCACCCATATGCATTTCAACTATAGCATAC
1 TTTTATGTTGATAATGCACCCATATGCATTTCAACTATA-TATAC
* *
473502 TTTGATATTGATAATGCACCCATATGCATTTCAACTATAGTATAC
1 TTTTATGTTGATAATGCACCCATATGCATTTCAACTATA-TATAC
* * *
473547 TTTTATGTTGATAATTCACCCATATGCATTTCGACTATAAAATAC
1 TTTTATGTTGATAATGCACCCATATGCATTTCAACTAT-ATATAC
* * * * *
473592 TTTTATGATGATAATACATCAATATGCATTTCAACTATAGTATAT
1 TTTTATGTTGATAATGCACCCATATGCATTTCAACTATA-TATAC
* *
473637 TTTTATGTTGATAATGCACCCATATGCATTTCAACTATGTCATCC
1 TTTTATGTTGATAATGCACCCATATGCATTTCAACTATAT-ATAC
* *
473682 TTTCATGTTGATAATGCACCTATATG
1 TTTTATGTTGATAATGCACCCATATG
473708 TATTGTTATT
Statistics
Matches: 342, Mismatches: 39, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
44 6 0.02
45 335 0.98
46 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.40
Consensus pattern (44 bp):
TTTTATGTTGATAATGCACCCATATGCATTTCAACTATATATAC
Found at i:473448 original size:135 final size:135
Alignment explanation
Indices: 473278--473707 Score: 657
Period size: 135 Copynumber: 3.2 Consensus size: 135
473268 ACAGCCTACA
* * * *
473278 TTTT-TGTTGATAATACACCCATATGTATTTCGACTATATAATACTTTTATGTTGATTATGCACC
1 TTTTATGTTGATAATGCACCCATATGCATTTCGACTATAAAATACTTTTATGTTGATAATGCACC
* *
473342 CATATGCATTTCAACTGTAGCATACTTTTATGTTGATAATGCACCCATATGCATTTCAACTGTAG
66 CATATGCATTTCAACTATAGCATACTTTTATGTTGATAATGCACCCATATGCATTTCAACTATAG
473407 TATAC
131 TATAC
* *
473412 TTTTATGTTGATAATGCACCCATATGCATTTTGACTATAGAATACTTTTATGTTGATAATGCACC
1 TTTTATGTTGATAATGCACCCATATGCATTTCGACTATAAAATACTTTTATGTTGATAATGCACC
* *
473477 CATATGCATTTCAACTATAGCATACTTTGATATTGATAATGCACCCATATGCATTTCAACTATAG
66 CATATGCATTTCAACTATAGCATACTTTTATGTTGATAATGCACCCATATGCATTTCAACTATAG
473542 TATAC
131 TATAC
* * * *
473547 TTTTATGTTGATAATTCACCCATATGCATTTCGACTATAAAATACTTTTATGATGATAATACATC
1 TTTTATGTTGATAATGCACCCATATGCATTTCGACTATAAAATACTTTTATGTTGATAATGCACC
* * *
473612 AATATGCATTTCAACTATAGTATATTTTTATGTTGATAATGCACCCATATGCATTTCAACTAT-G
66 CATATGCATTTCAACTATAGCATACTTTTATGTTGATAATGCACCCATATGCATTTCAACTATAG
*
473676 TCATCC
131 T-ATAC
* *
473682 TTTCATGTTGATAATGCACCTATATG
1 TTTTATGTTGATAATGCACCCATATG
473708 TATTGTTATT
Statistics
Matches: 270, Mismatches: 24, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
134 6 0.02
135 264 0.98
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.40
Consensus pattern (135 bp):
TTTTATGTTGATAATGCACCCATATGCATTTCGACTATAAAATACTTTTATGTTGATAATGCACC
CATATGCATTTCAACTATAGCATACTTTTATGTTGATAATGCACCCATATGCATTTCAACTATAG
TATAC
Found at i:475698 original size:20 final size:22
Alignment explanation
Indices: 475654--475708 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 22
475644 ACTATATTGG
*
475654 AGTATCGGTACCAGAGTATAGA
1 AGTATCGGTACCAGAGTAGAGA
*
475676 AGTATCGGTACTAG-G-AGAGA
1 AGTATCGGTACCAGAGTAGAGA
475696 AGTAT-GGATACCA
1 AGTATCGG-TACCA
475709 TGGATGCATA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 2 0.07
20 13 0.45
21 1 0.03
22 13 0.45
ACGTcount: A:0.36, C:0.13, G:0.29, T:0.22
Consensus pattern (22 bp):
AGTATCGGTACCAGAGTAGAGA
Found at i:477209 original size:54 final size:54
Alignment explanation
Indices: 476124--477187 Score: 1493
Period size: 54 Copynumber: 19.9 Consensus size: 54
476114 TTACCGATTG
* *
476124 GGCACTATGTGTGCAACTTAAAAAATTCATAATAAGTTTATGAATTTCCGTATT
1 GGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATT
* * * *
476178 GGTACTGTGTGTGCAACCTAAGAAATTCATAATAAGTTTATGAATCTCCATATT
1 GGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATT
* * **
476232 GGCACTGTGTCTGCAACTTAAGAAATTCATAATATGTTTATGAATTTTTGTATT
1 GGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATT
** * * **
476286 TCCATTGTGTGTGCAACTTAAGAAGTTCATAATAAGTTTATGAATTTTTGTATT
1 GGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATT
* *
476340 GGCACAGTGTGTGCAACCTAAGAAATTCATAATAAGTTTATGAATTTCCGTATT
1 GGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATT
* *
476394 GGCACTGTGTGTGCAACTTAAGAAATTCATAAAAAGTTTATGAATTTCTGTATT
1 GGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATT
*
476448 GGCAC--TGTGTGCAACTTAAGAAATTCATAATAAG-TTATGAATTTTCGTATT
1 GGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATT
* * * * *
476499 GGCATTGTGTGTGCAATTTAA-TAATTCATAATAAGTTTATG-ATTTTCGTATG
1 GGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATT
* *
476551 GGCACTGTGTGTGCAACTTAAGGAATTCAT-ATAAGTTTATGAATTTTC--ATT
1 GGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATT
* * * *
476602 GCCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGATTTTTCGTTTT
1 GGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATT
* * *
476656 GCCACTGTGTGTGCAACCTAATAAATTCATAATAAGTTTATGAATTTCCGTATT
1 GGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATT
* * *
476710 GGCATTGTGTGTGCAACCTAAGAAGTTCATAATAAGTTTATGAATTTCCGTATT
1 GGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATT
* * *
476764 GGCACTGTGTGTGCAACCTAAGAAATTCATAATAAGTTTATGGATTTTCGTATT
1 GGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATT
* *
476818 GGCACTGTGTTTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTCTGTATT
1 GGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATT
* *
476872 GGCACTGTATGTG-ACACTTAAGAAATTAATAATAAGTTTATGAATTTCCGTATT
1 GGCACTGTGTGTGCA-ACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATT
* * *
476926 GGCACTGTGTGTGCAACTTAAGAAATGCATAATAAGTTTATGAATTTTCATATT
1 GGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATT
**
476980 GGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTTTGTATT
1 GGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATT
* * * * *
477034 GGTACTGT-TGTGCAACCTAAGAAATTTATAAAAAGTTTATGAATTTCTGTATT
1 GGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATT
*
477087 GGCACTGTGTGTGCAACCTT-AGAAATTCATAATAAGTTTATGAATTTCTGTATT
1 GGCACTGTGTGTGCAA-CTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATT
* * * *
477141 GGCACTGTTTGTGCAACCTAAGAAATCCATAATAACTTTATGAATTT
1 GGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTT
477188 TTGTATTGTC
Statistics
Matches: 907, Mismatches: 90, Indels: 26
0.89 0.09 0.03
Matches are distributed among these distances:
51 49 0.05
52 98 0.11
53 82 0.09
54 675 0.74
55 3 0.00
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.39
Consensus pattern (54 bp):
GGCACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATT
Done.