genome.fa.s9398.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009398.1 Hibiscus syriacus cultivar Beakdansim tig00113303_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82920

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6264--6331	19	3.5	19	80	13	77	14	26	29	29	1.95
6244--6333	10	9.3	9	74	13	63	15	27	26	30	1.96
6330--6405	5	14.8	5	78	13	75	19	51	22	6	1.70
6343--6400	17	3.8	17	66	29	58	18	50	22	8	1.74
6341--6412	22	3.0	22	88	11	99	18	50	22	9	1.76
6337--6419	27	3.0	26	89	8	121	18	48	22	10	1.79
6402--6432	7	4.4	7	100	0	62	16	29	29	25	1.96
12822--12862	19	2.3	17	88	12	64	39	4	0	56	1.21
12819--12887	27	2.7	26	78	13	72	37	5	1	55	1.33
12819--12887	28	2.4	29	80	4	86	37	5	1	55	1.33
16050--16297	130	1.9	130	92	0	415	35	14	13	37	1.85
16064--16328	130	2.0	129	81	4	300	38	12	13	35	1.83
16623--16685	28	2.3	27	78	8	63	46	1	3	49	1.27
16914--16957	21	2.1	21	100	0	88	40	0	13	45	1.44
16925--17010	35	2.5	35	82	0	91	38	1	19	40	1.60
18086--18132	20	2.4	19	82	10	67	53	10	17	19	1.72
17874--18346	181	2.6	182	90	0	723	42	13	17	27	1.87
18267--18313	20	2.4	19	82	10	67	53	10	17	19	1.72
18278--18318	20	2.2	19	83	12	50	51	14	17	17	1.77
19058--19827	183	4.2	183	96	1	1359	35	14	16	33	1.89
19058--19827	365	2.1	364	94	1	1355	35	14	16	33	1.89
19701--19947	120	2.1	120	94	0	431	32	13	15	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19518--20112	303	2.0	303	97	0	1118	34	14	16	34	1.89
23461--23623	87	1.9	87	94	0	290	33	14	10	41	1.80
23545--23589	23	2.0	23	86	0	63	37	15	8	37	1.79
23805--23842	18	2.1	19	85	5	51	39	0	0	60	0.97
26270--26312	15	2.9	15	85	0	50	16	13	60	9	1.58
29800--29834	12	2.9	12	86	0	52	20	28	5	45	1.73
30142--30190	24	2.1	22	82	14	55	53	6	6	34	1.51
35457--35953	55	9.0	55	88	2	619	31	23	17	27	1.97
35955--36026	37	2.0	36	94	2	126	20	22	20	36	1.96
37193--37278	45	1.9	45	88	4	129	13	29	18	38	1.90
37290--37372	7	11.7	7	90	2	121	12	13	2	72	1.22
37287--37434	21	7.2	20	76	17	101	9	13	1	75	1.10
37362--37424	17	3.7	17	76	19	69	6	12	0	80	0.88
37390--37431	13	3.4	13	81	18	54	4	16	0	78	0.91
37288--37424	14	8.4	16	73	24	67	9	13	1	75	1.10
43343--43406	23	2.8	23	87	0	92	28	26	26	18	1.98
43424--43639	103	2.1	103	95	0	387	36	23	13	26	1.92
44375--44595	64	3.5	64	80	6	234	27	18	19	34	1.95
49321--49384	23	2.8	23	90	0	101	26	26	28	18	1.98
49400--49617	103	2.1	103	93	1	366	37	22	13	26	1.92
50353--50573	64	3.5	64	81	7	227	28	18	19	33	1.95
55991--56095	45	2.3	46	93	3	176	40	20	7	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69402--69432	15	2.1	15	93	0	53	64	6	0	29	1.18
71033--71105	23	3.2	23	88	0	101	39	19	5	35	1.75
71520--71592	23	3.2	23	90	0	110	39	20	4	35	1.72
71610--71654	22	2.0	22	86	0	63	42	8	6	42	1.62
70587--72876	489	4.6	489	92	3	3633	40	11	7	41	1.68
72009--72081	23	3.2	23	92	0	119	38	21	5	34	1.77
72500--72616	23	5.1	23	91	0	189	39	22	4	34	1.74
72500--72616	46	2.5	46	97	0	216	39	22	4	34	1.74
75514--75756	117	2.1	119	89	3	375	38	14	13	33	1.85
75349--75939	299	2.0	302	94	1	1044	34	16	14	34	1.88
75633--76213	182	3.2	181	93	3	960	33	17	14	34	1.89
78832--79585	200	3.8	199	93	2	1256	30	18	14	36	1.91
79807--79866	18	3.3	18	86	4	75	51	11	1	35	1.48
79819--79866	18	2.6	18	93	3	78	54	10	2	33	1.46

Tables:   1

The End!