genome.fa.s9399.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009399.1 Hibiscus syriacus cultivar Beakdansim tig00113326_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  409278

Tables:   1   

This is table  1  of  1  ( 111 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2329--2361	14	2.4	14	90	10	50	78	0	21	0	0.75
6535--6567	14	2.4	14	90	10	50	78	0	21	0	0.75
10739--10771	14	2.4	14	90	10	50	78	0	21	0	0.75
16942--17021	35	2.2	37	88	4	119	26	3	37	32	1.74
22236--22280	20	2.4	19	85	14	58	2	20	2	75	1.01
38725--38777	28	1.9	27	96	3	97	39	0	33	26	1.57
39985--40028	20	2.1	21	83	4	54	43	9	11	36	1.72
41256--41315	30	2.0	31	83	3	77	26	8	10	55	1.61
42228--42277	20	2.5	20	87	3	66	38	12	6	44	1.66
42692--42729	20	1.9	20	84	10	51	18	21	0	60	1.36
43570--43610	21	2.0	21	85	9	57	65	0	14	19	1.26
43633--43674	22	2.0	21	90	4	66	30	2	33	33	1.71
48890--48993	33	3.1	33	82	9	95	30	36	1	30	1.69
49349--49378	12	2.4	12	94	5	51	76	0	23	0	0.78
53357--53460	33	3.1	33	82	9	95	30	36	1	30	1.69
55496--55575	18	4.6	17	68	27	53	5	16	5	73	1.18
55510--55568	13	4.7	12	78	15	57	3	16	3	76	1.06
63575--63692	59	2.0	59	96	0	218	38	10	11	38	1.76
75208--75268	32	1.9	33	87	9	92	16	24	3	55	1.56
75705--75759	17	3.4	17	80	7	51	16	16	1	65	1.36
84252--84298	24	2.0	24	83	8	60	6	8	21	63	1.44
86361--86396	1	36.0	1	88	0	54	94	0	5	0	0.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95033--95081	16	2.9	16	84	6	53	16	22	0	61	1.34
97776--97825	19	2.6	19	93	0	82	44	6	16	34	1.72
109606--109650	20	2.4	19	85	14	58	2	20	2	75	1.01
111929--111983	23	2.4	24	84	6	69	63	16	12	7	1.50
111929--111982	24	2.4	22	81	9	63	62	16	12	7	1.51
115800--115834	15	2.4	14	90	9	52	2	8	0	88	0.61
115798--115835	10	3.7	10	89	3	58	2	10	0	86	0.66
120031--120134	33	3.1	33	82	9	95	30	36	1	30	1.69
120544--120590	14	3.1	15	75	12	51	72	6	19	2	1.17
124002--124105	33	3.1	33	82	9	95	30	36	1	30	1.69
127248--127291	10	4.3	10	83	16	63	0	18	0	81	0.68
127248--127290	5	8.6	5	83	16	54	0	18	0	81	0.69
127248--127291	15	2.8	16	83	16	65	0	18	0	81	0.68
144024--144073	19	2.5	20	87	3	66	44	8	16	32	1.76
144983--145042	30	2.0	31	83	3	77	55	10	8	26	1.61
148220--148272	19	2.6	20	85	8	63	41	5	13	39	1.68
150368--150426	29	2.1	27	87	6	82	52	1	33	11	1.48
150603--150647	19	2.5	18	85	7	56	4	20	2	73	1.11
150590--150644	19	2.8	20	72	13	51	3	21	1	72	1.09
150913--150952	19	2.0	20	90	4	64	65	0	15	20	1.28
163865--163956	35	2.6	35	84	1	121	32	4	34	28	1.77
166825--166893	33	2.1	33	83	5	86	31	1	36	30	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168952--169038	26	3.3	26	90	0	129	33	2	39	25	1.68
169742--169847	35	3.0	35	83	5	142	33	2	35	27	1.72
171285--171332	19	2.5	19	93	0	78	50	6	10	33	1.62
176470--176502	14	2.4	14	90	10	50	0	21	0	78	0.75
179851--179919	33	2.1	33	83	5	86	31	1	36	30	1.67
183406--183456	17	3.1	16	76	17	52	1	11	7	78	1.04
183799--183867	33	2.1	33	83	5	86	31	1	36	30	1.67
189247--189385	72	1.9	71	81	7	165	22	17	20	39	1.92
201045--201100	13	4.7	11	74	21	51	0	19	1	78	0.84
201045--201100	18	3.1	18	82	17	71	0	19	1	78	0.84
201441--201479	20	1.9	21	84	5	53	33	0	38	28	1.57
205199--205244	20	2.2	20	88	3	74	19	32	6	41	1.77
219536--219604	33	2.1	33	83	5	86	30	36	1	31	1.67
222415--222467	21	2.5	22	76	14	58	75	1	15	7	1.11
223686--223737	19	2.6	21	90	6	81	46	5	13	34	1.67
224716--224775	30	2.0	31	83	3	77	55	10	8	26	1.61
230992--231047	18	3.1	19	76	19	57	78	5	16	0	0.92
231243--231301	16	3.6	16	78	15	59	16	15	1	66	1.34
234193--234242	14	3.9	13	73	21	52	78	2	20	0	0.86
234187--234242	19	3.1	18	82	17	71	78	1	19	0	0.84
234187--234242	11	4.7	11	74	21	51	78	1	19	0	0.84
237909--237941	14	2.4	14	90	10	50	78	0	21	0	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
242122--242154	14	2.4	14	90	10	50	78	0	21	0	0.75
256446--256483	20	1.9	20	89	10	60	65	0	18	15	1.27
270239--270286	19	2.3	22	80	20	59	2	18	2	77	0.97
273566--273603	13	2.8	13	84	15	51	0	21	0	78	0.74
278148--278180	10	3.7	9	84	15	50	0	15	0	84	0.61
278164--278205	22	2.0	21	85	4	57	2	19	2	76	1.01
281051--281088	20	1.9	20	84	10	51	18	21	0	60	1.36
281356--281400	20	2.4	18	85	14	56	75	2	20	2	1.01
285618--285655	20	1.9	20	84	10	51	18	21	0	60	1.36
286659--286704	20	2.3	20	92	3	76	34	10	6	47	1.64
290880--290948	33	2.1	33	83	5	86	31	1	36	30	1.67
295341--295409	33	2.1	33	83	5	86	31	1	36	30	1.67
297498--297568	2	35.5	2	100	0	142	50	0	0	49	1.00
300165--300250	43	2.0	44	97	2	165	16	27	20	34	1.94
322328--322381	18	3.1	18	79	12	67	77	3	11	7	1.09
325384--325426	14	3.1	14	86	3	52	27	39	0	32	1.57
330090--330129	19	2.0	20	95	4	73	62	0	15	22	1.32
337629--337680	24	2.2	24	89	0	77	65	13	13	7	1.46
339504--339533	13	2.4	13	94	5	53	43	0	30	26	1.55
342740--342801	28	2.2	28	83	13	76	70	4	14	9	1.29
345299--345358	30	2.0	31	83	3	77	26	8	10	55	1.61
346266--346317	21	2.6	21	90	6	81	34	13	5	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349529--349588	30	2.0	31	83	3	77	26	8	10	55	1.61
350494--350545	21	2.6	21	90	6	81	34	13	5	46	1.67
357510--357549	19	2.1	19	85	0	53	27	35	10	27	1.89
357562--357601	19	2.0	20	86	13	57	20	12	0	67	1.22
361258--361309	19	2.6	21	90	6	81	46	5	13	34	1.67
362218--362277	30	2.0	31	83	3	77	55	10	8	26	1.61
364717--364772	13	4.7	11	74	21	51	0	19	1	78	0.84
364717--364772	18	3.1	18	82	17	71	0	19	1	78	0.84
365497--365546	21	2.5	19	87	6	64	48	8	12	32	1.69
365497--365548	19	2.6	21	87	6	72	46	7	13	32	1.72
366457--366516	30	2.0	31	83	3	77	55	10	8	26	1.61
368251--368292	19	2.2	20	86	4	59	0	11	9	78	0.96
370853--370966	31	3.7	31	91	1	176	28	19	27	25	1.99
371718--371768	26	2.0	26	100	0	102	35	27	5	31	1.81
371981--372030	26	1.9	26	87	0	73	70	16	8	6	1.32
376970--377080	35	3.2	35	87	2	152	27	36	3	32	1.74
379668--379711	21	2.0	22	95	4	81	70	9	4	15	1.30
386856--386895	19	2.0	20	85	4	55	62	0	15	22	1.32
391071--391127	13	4.7	12	74	10	53	3	17	1	77	1.00
391393--391432	19	2.0	20	85	4	55	62	0	15	22	1.32
395195--395287	34	2.7	34	86	1	132	35	3	34	26	1.73
396779--396812	17	2.0	17	100	0	68	29	23	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399873--399907	14	2.5	14	95	0	61	0	20	2	77	0.90

Tables:   1

The End!