Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000094.1 Hibiscus syriacus cultivar Beakdansim tig00000173_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111762

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1765--3361
804
2.0
786
91
4
2607
31
15
17
35
1.91
4235--4324
26
3.5
26
92
0
153
37
0
34
27
1.57
4235--4335
52
1.9
52
89
0
157
39
0
33
26
1.57
5001--5102
35
2.9
35
77
1
105
33
4
35
26
1.78
7016--7048
17
1.9
17
93
0
57
39
0
30
30
1.57
7289--7337
19
2.5
20
83
9
66
0
12
2
85
0.68
7289--7337
25
2.0
25
87
0
71
0
12
2
85
0.68
7290--7337
6
7.8
6
90
4
69
0
12
2
85
0.69
10717--10766
19
2.5
21
90
6
77
48
6
12
34
1.65
11653--11712
30
2.0
31
86
3
86
53
10
8
28
1.63
14171--14222
18
2.6
21
82
17
67
3
15
1
78
0.98
14913--14964
19
2.6
21
87
6
72
44
5
13
36
1.68
15042--15084
22
2.0
22
81
9
52
30
9
34
25
1.87
21076--21134
26
2.3
26
83
16
70
69
6
15
8
1.34
33133--33306
91
1.9
91
89
0
267
30
21
25
21
1.99
36412--36471
25
2.3
25
85
5
75
78
1
13
6
1.02
36429--36471
13
3.4
13
77
6
52
81
0
11
6
0.87
39300--39345
23
2.0
23
83
8
58
36
6
8
47
1.60
40021--40103
39
2.2
39
97
2
159
31
22
26
19
1.98
46941--46985
6
7.2
6
87
7
63
0
17
2
80
0.82
46943--46978
19
1.9
18
94
5
63
0
13
2
83
0.76
49606--49651
23
2.0
23
83
8
58
32
6
8
52
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51479--51515
19
2.0
19
94
5
67
86
10
2
0
0.67
56963--57023
11
6.0
9
78
16
50
80
1
16
1
0.88
56977--57015
21
1.9
21
89
5
62
76
2
17
2
1.01
62194--62232
19
2.1
19
90
0
60
25
33
15
25
1.95
62306--62354
19
2.6
19
84
9
57
24
28
20
26
1.99
66692--66774
16
5.2
15
88
5
76
75
0
21
2
0.91
66680--66756
24
3.3
23
87
8
95
76
0
23
0
0.78
66692--66746
8
6.9
8
100
0
110
76
0
23
0
0.79
76022--76060
19
2.1
19
90
0
60
25
33
15
25
1.95
76093--76144
19
2.7
19
90
0
86
28
32
19
19
1.96
77056--77084
15
2.0
15
93
6
51
75
3
20
0
0.94
81936--81990
24
2.3
24
75
6
58
36
20
9
34
1.84
83193--83236
6
7.2
6
82
12
54
0
18
2
79
0.83
83193--83236
13
3.6
12
82
11
54
0
18
2
79
0.83
83642--83680
13
3.0
13
92
0
60
35
2
35
25
1.70
84121--84206
13
7.2
12
72
22
58
29
3
37
30
1.74
84103--84207
36
2.9
36
92
1
167
27
4
36
31
1.78
87584--87637
25
2.2
24
83
9
72
1
16
3
77
1.00
87584--87640
11
5.3
11
75
10
55
1
17
3
77
1.00
87602--87652
25
2.0
25
85
7
68
0
13
3
82
0.81
88051--88136
13
7.2
12
72
22
58
29
3
37
30
1.74
88033--88137
36
2.9
36
92
4
169
28
4
36
30
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97881--97952
17
4.2
18
77
13
71
40
9
11
38
1.74
99132--99172
21
2.0
21
90
9
66
24
26
2
46
1.65
99127--99183
21
2.9
19
79
18
64
19
28
1
50
1.57
102939--102991
17
3.1
17
86
5
72
39
5
15
39
1.70
104178--104240
21
3.2
19
79
18
67
19
28
1
50
1.56
109892--109917
10
2.6
10
100
0
52
0
0
7
92
0.39

Tables:   1

The End!