genome.fa.s940.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000940.1 Hibiscus syriacus cultivar Beakdansim tig00001878_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108592

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16298--16363	31	2.1	31	94	0	114	36	13	25	24	1.92
19782--19811	2	15.0	2	100	0	60	50	0	0	50	1.00
20064--20105	14	3.0	14	100	0	84	7	28	42	21	1.79
20044--20077	10	3.4	10	84	15	52	8	29	38	23	1.85
23696--23721	12	2.2	12	100	0	52	50	0	42	7	1.31
27083--27109	2	13.5	2	100	0	54	51	0	0	48	1.00
33074--33128	27	2.0	27	82	0	65	60	1	7	30	1.35
43025--43136	60	1.9	59	85	5	154	33	12	13	40	1.82
44632--44671	21	1.9	21	84	0	53	50	32	0	17	1.47
48070--48189	42	2.9	42	96	0	222	16	20	18	44	1.87
48378--48419	21	2.0	21	81	9	50	50	0	0	50	1.00
48389--48463	29	2.5	30	77	16	84	46	1	1	50	1.18
48448--48547	28	3.5	29	78	14	100	45	1	2	52	1.19
48714--48783	20	3.5	20	94	0	122	35	12	10	41	1.77
48714--48792	40	2.0	40	87	0	113	35	13	8	41	1.76
48766--48847	15	5.5	15	88	2	121	35	19	7	37	1.80
48766--48847	30	2.8	30	94	1	139	35	19	7	37	1.80
48766--48852	45	2.0	44	93	2	147	33	19	6	40	1.78
49579--49648	31	2.3	31	82	0	77	41	14	7	37	1.73
59277--59440	77	2.1	78	89	4	251	37	5	14	42	1.69
60651--60805	83	1.9	83	90	0	247	32	13	18	35	1.90
64904--64940	17	2.2	17	95	0	65	37	5	13	43	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69551--69582	13	2.5	13	100	0	64	0	46	12	40	1.42
70544--70575	3	10.3	3	93	6	55	68	0	0	31	0.90
70547--70591	19	2.2	22	88	11	69	64	2	0	33	1.06
70638--70827	71	2.7	73	83	9	218	44	7	5	42	1.56
70725--70749	11	2.3	11	100	0	50	44	8	8	40	1.63
70762--70786	12	2.1	12	100	0	50	40	8	8	44	1.63
70655--70827	34	4.9	34	77	16	176	43	6	5	43	1.55
71526--72509	166	6.0	166	96	0	1746	23	21	26	29	1.99
78016--78047	13	2.5	13	100	0	64	0	46	12	40	1.42
79005--79042	3	12.3	3	94	5	67	68	0	0	31	0.90
79107--79296	71	2.7	73	83	9	218	44	7	5	42	1.56
79194--79218	11	2.3	11	100	0	50	44	8	8	40	1.63
79231--79255	12	2.1	12	100	0	50	40	8	8	44	1.63
79124--79296	34	4.9	34	77	16	176	43	6	5	43	1.55
79595--79670	37	2.1	37	100	0	152	50	7	5	36	1.54
79601--79681	37	2.1	37	90	4	126	53	7	6	33	1.54
83505--83545	18	2.3	18	91	4	66	63	2	4	29	1.28
83587--83626	10	4.0	10	83	0	53	40	2	30	27	1.70
85264--85289	2	13.0	2	100	0	52	50	0	0	50	1.00
86118--86188	3	23.7	3	85	5	99	32	0	2	64	1.08
86273--86346	25	3.0	25	92	2	114	37	18	14	28	1.91
88254--88383	63	2.1	63	82	2	154	29	9	8	53	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94104--94131	14	2.0	14	100	0	56	50	28	0	21	1.49
94575--94756	30	5.6	29	68	22	112	31	11	14	42	1.81
94484--94851	67	5.6	67	90	3	518	30	12	13	43	1.81
95311--95349	15	2.6	15	91	0	60	33	23	5	38	1.77
95355--95514	64	2.5	64	78	5	173	28	13	15	42	1.85
95844--95897	28	1.9	28	85	7	74	22	16	16	44	1.86
95926--96252	46	7.5	45	72	15	258	24	29	19	25	1.98
95962--96291	40	7.8	39	69	17	178	24	31	19	24	1.98
95908--96291	129	3.0	129	98	0	732	25	30	19	24	1.98
96488--96555	3	22.7	3	85	5	93	32	0	2	64	1.08
96640--96738	25	4.0	25	94	1	164	37	19	15	28	1.92
103438--103504	34	2.0	34	82	11	84	49	17	10	22	1.77
108131--108166	18	2.0	18	100	0	72	22	5	22	50	1.70
108443--108481	19	2.1	19	100	0	78	51	10	10	28	1.68

Tables:   1

The End!