genome.fa.s9404.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009404.1 Hibiscus syriacus cultivar Beakdansim tig00113334_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40017

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12587--12627	19	2.2	19	90	0	64	34	4	39	21	1.75
12782--12861	38	2.1	38	97	0	151	33	33	13	18	1.90
13659--13814	64	2.4	65	77	10	160	32	21	20	25	1.97
14584--14803	105	2.1	104	93	1	370	27	13	22	37	1.91
14810--14887	23	3.3	23	78	5	86	24	19	23	33	1.97
15418--15802	181	2.1	181	92	2	630	45	8	3	43	1.49
19638--19668	7	4.4	7	100	0	62	25	29	29	16	1.96
19665--19710	5	8.8	5	86	9	65	4	21	54	19	1.61
19651--19723	27	2.6	27	91	4	119	12	23	46	17	1.82
19658--19705	22	2.2	22	100	0	96	8	22	50	18	1.74
19725--19822	9	10.2	9	75	12	79	29	27	26	16	1.97
19726--19823	19	5.1	19	78	13	92	29	27	25	17	1.97
19749--19823	29	2.5	31	87	8	111	30	26	25	17	1.97
19766--19822	30	1.9	29	89	3	87	33	24	26	15	1.95
26975--27005	7	4.4	7	100	0	62	25	29	29	16	1.96
26988--27060	27	2.6	27	93	4	119	10	23	47	17	1.79
27002--27047	5	8.8	5	86	9	65	4	21	54	19	1.61
26995--27042	22	2.2	22	100	0	96	8	22	50	18	1.74
27063--27160	19	5.1	19	80	13	101	28	27	26	17	1.98
27062--27159	9	10.2	9	79	10	88	28	27	27	16	1.97
27074--27160	29	3.0	28	80	11	61	29	26	26	17	1.97
30202--30243	21	2.0	21	95	0	75	23	21	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30264--30304	21	2.0	21	85	0	55	24	21	24	29	1.99
32240--32332	19	4.9	19	73	5	62	31	17	8	43	1.79
32240--32333	38	2.5	38	82	0	98	30	17	9	42	1.81
32258--32333	19	4.0	19	78	0	80	30	18	9	42	1.81
35749--35864	60	1.9	60	81	6	137	31	14	15	38	1.88
37642--37710	23	3.0	23	84	0	84	27	23	26	23	2.00
37733--37931	103	1.9	103	95	0	362	37	22	11	29	1.89

Tables:   1

The End!