Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009406.1 Hibiscus syriacus cultivar Beakdansim tig00113338_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 689325
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 3
Found at i:193892 original size:19 final size:18
Alignment explanation
Indices: 193868--193910 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
193858 CATACTAATT
*
193868 TTTTTTGTAATTTTTCTGA
1 TTTTTTGT-ATTTTTCTAA
*
193887 TTTTTTGTATTTTTTTAA
1 TTTTTTGTATTTTTCTAA
193905 TTTTTT
1 TTTTTT
193911 AAATTCAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 14 0.64
19 8 0.36
ACGTcount: A:0.14, C:0.02, G:0.07, T:0.77
Consensus pattern (18 bp):
TTTTTTGTATTTTTCTAA
Found at i:193944 original size:104 final size:99
Alignment explanation
Indices: 193719--193925 Score: 268
Period size: 102 Copynumber: 2.1 Consensus size: 99
193709 ATTCAAAAAA
*
193719 AAGATAGATAAAAATGCAT-TG-AAATTAGATATATAAACATACTATTTTTTTGTAATTTTTCTG
1 AAGATAGATAAAAAT--ATATGAAAATTAGATAAATAAACATACTATTTTTTTGTAATTTTTCTG
* *
193782 ATTTTTTTTATTTTTTTAAATTCAAGTATATTAATTTGC
64 ATTTTTTGTATTTTTTTAAATT--A-TATATTAAATTGC
193821 AAGATAGATAAAAATATATGAAAATTAGATAAATAAACATACTAATTTTTTTTGTAATTTTTCTG
1 AAGATAGATAAAAATATATGAAAATTAGATAAATAAACATACT-A-TTTTTTTGTAATTTTTCTG
193886 ATTTTTTGTATTTTTTT-AATT-T-T-TTAAATT-C
64 ATTTTTTGTATTTTTTTAAATTATATATTAAATTGC
193917 AA-ATAGATA
1 AAGATAGATA
193926 TTTATTAGAA
Statistics
Matches: 98, Mismatches: 3, Indels: 15
0.84 0.03 0.13
Matches are distributed among these distances:
95 7 0.07
96 3 0.03
97 6 0.06
98 1 0.01
99 1 0.01
100 2 0.02
101 2 0.02
102 36 0.37
103 5 0.05
104 35 0.36
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.48
Consensus pattern (99 bp):
AAGATAGATAAAAATATATGAAAATTAGATAAATAAACATACTATTTTTTTGTAATTTTTCTGAT
TTTTTGTATTTTTTTAAATTATATATTAAATTGC
Found at i:214886 original size:31 final size:31
Alignment explanation
Indices: 214848--214908 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
214838 TTCGAACAAT
*
214848 GATGATGTTGAAATGATGTTTGAAGCTCAAA
1 GATGATGTTGAAATGATGGTTGAAGCTCAAA
214879 GATGATGTTGAAATGATGGTTGAAGCTCAA
1 GATGATGTTGAAATGATGGTTGAAGCTCAA
214909 GTAATTATTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (31 bp):
GATGATGTTGAAATGATGGTTGAAGCTCAAA
Found at i:219631 original size:105 final size:100
Alignment explanation
Indices: 219517--219709 Score: 255
Period size: 105 Copynumber: 1.9 Consensus size: 100
219507 TCTTAATCTA
* * *
219517 ATAATCATGCAAT-AATGAATCAGCTAATTATAATAATAATTTAAATTAAATTAAAACGTTAAAA
1 ATAATCATGCAATAAATAAAT-AACTAAATATAATAATAATTTAAATTAAATT-AAACG-TAAAA
*
219581 TGTACCGTAT-CAGCAAAGTGTCGAGATATTTAATTTAATAT
63 TGT----TATGCAGCAAAGTGTAGAGATATTTAATTTAATAT
* *
219622 ATAATCATGCATTAAATAAATAACTAAATATACTAATAATTTAAATTAAATTAAACGTAAAATGT
1 ATAATCATGCAATAAATAAATAACTAAATATAATAATAATTTAAATTAAATTAAACGTAAAATGT
219687 TATGCAGCAAAGTGTAGAGATAT
66 TATGCAGCAAAGTGTAGAGATAT
219710 AATTTCCATC
Statistics
Matches: 80, Mismatches: 6, Indels: 9
0.84 0.06 0.09
Matches are distributed among these distances:
99 3 0.04
100 18 0.22
103 8 0.10
104 5 0.06
105 40 0.50
106 6 0.08
ACGTcount: A:0.48, C:0.09, G:0.10, T:0.33
Consensus pattern (100 bp):
ATAATCATGCAATAAATAAATAACTAAATATAATAATAATTTAAATTAAATTAAACGTAAAATGT
TATGCAGCAAAGTGTAGAGATATTTAATTTAATAT
Found at i:220073 original size:51 final size:49
Alignment explanation
Indices: 219970--220095 Score: 171
Period size: 51 Copynumber: 2.5 Consensus size: 49
219960 AGATATACAG
* * * **
219970 GTATAGCGCGCTGTAGGGGCGCGCTATACCCACGTGGCGCCAGCTCACC
1 GTATAGCGCGGTGCAGGGGCGCGCTATACCAACGTGGCGCCAAATCACC
*
220019 GTATAGCGCGGTGCAGGGGGCGCGCTATATCCAACGTGGCGCCAAATCATC
1 GTATAGCGCGGTGCA-GGGGCGCGCTATA-CCAACGTGGCGCCAAATCACC
220070 GTATAGCGCGGTGCAAGGGGCGCGCT
1 GTATAGCGCGGTGC-AGGGGCGCGCT
220096 TTACTGCTAA
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
49 13 0.19
50 13 0.19
51 41 0.60
52 1 0.01
ACGTcount: A:0.18, C:0.29, G:0.36, T:0.17
Consensus pattern (49 bp):
GTATAGCGCGGTGCAGGGGCGCGCTATACCAACGTGGCGCCAAATCACC
Found at i:223908 original size:9 final size:9
Alignment explanation
Indices: 223876--223962 Score: 68
Period size: 9 Copynumber: 9.3 Consensus size: 9
223866 CTGCTGGAAA
223876 ACCGGTTTG
1 ACCGGTTTG
*
223885 ACCAGTTTTG
1 ACC-GGTTTG
223895 AACCGGTTTG
1 -ACCGGTTTG
*
223905 ACCGGTTCG
1 ACCGGTTTG
*
223914 AACGGTTTG
1 ACCGGTTTG
* *
223923 ACCGATCTG
1 ACCGGTTTG
223932 AACCGG-TTG
1 -ACCGGTTTG
*
223941 ACCGGTCTG
1 ACCGGTTTG
*
223950 AACCGGGTTG
1 -ACCGGTTTG
223960 ACC
1 ACC
223963 CGACCCGACT
Statistics
Matches: 60, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
8 5 0.08
9 31 0.52
10 21 0.35
11 3 0.05
ACGTcount: A:0.18, C:0.25, G:0.30, T:0.26
Consensus pattern (9 bp):
ACCGGTTTG
Found at i:223921 original size:18 final size:19
Alignment explanation
Indices: 223875--223962 Score: 85
Period size: 18 Copynumber: 4.7 Consensus size: 19
223865 GCTGCTGGAA
* *
223875 AACCGGTTTGACCAGTTTTG
1 AACCGGTTTGACC-GGTTCG
223895 AACCGGTTTGACCGGTTCG
1 AACCGGTTTGACCGGTTCG
*
223914 AA-CGGTTTGACC-GATCTG
1 AACCGGTTTGACCGGTTC-G
223932 AACCGG-TTGACCGG-TCTG
1 AACCGGTTTGACCGGTTC-G
*
223950 AACCGGGTTGACC
1 AACCGGTTTGACC
223963 CGACCCGACT
Statistics
Matches: 61, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
17 3 0.05
18 29 0.48
19 16 0.26
20 13 0.21
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (19 bp):
AACCGGTTTGACCGGTTCG
Found at i:223961 original size:37 final size:39
Alignment explanation
Indices: 223875--223962 Score: 112
Period size: 37 Copynumber: 2.3 Consensus size: 39
223865 GCTGCTGGAA
* *
223875 AACCGGTTTGACCAGTTTTGAACCGGTTTGACCGGTTCG
1 AACCGGTTTGACCAGATCTGAACCGGTTTGACCGGTTCG
223914 AA-CGGTTTGACC-GATCTGAACCGG-TTGACCGG-TCTG
1 AACCGGTTTGACCAGATCTGAACCGGTTTGACCGGTTC-G
*
223950 AACCGGGTTGACC
1 AACCGGTTTGACC
223963 CGACCCGACT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
35 2 0.05
36 11 0.25
37 19 0.43
38 10 0.23
39 2 0.05
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (39 bp):
AACCGGTTTGACCAGATCTGAACCGGTTTGACCGGTTCG
Found at i:223996 original size:33 final size:33
Alignment explanation
Indices: 223956--224065 Score: 116
Period size: 33 Copynumber: 3.2 Consensus size: 33
223946 TCTGAACCGG
223956 GTTGACCCGACCCGACTGTTGACCGACCCGACC
1 GTTGACCCGACCCGACTGTTGACCGACCCGACC
* *
223989 GTTGACCCGACCCGACCGTTGACCGTTGACCGTGACC
1 GTTGACCCGACCCGACTGTTGACC---GACC-CGACC
* *
224026 GTTGACCGTGA-CCG-TTGTTGACCCGACCCGACC
1 GTTGACC-CGACCCGACTGTTGA-CCGACCCGACC
224059 GTTGACC
1 GTTGACC
224066 GTTGACCGTG
Statistics
Matches: 65, Mismatches: 6, Indels: 12
0.78 0.07 0.14
Matches are distributed among these distances:
33 34 0.52
34 4 0.06
36 9 0.14
37 16 0.25
38 2 0.03
ACGTcount: A:0.16, C:0.38, G:0.26, T:0.19
Consensus pattern (33 bp):
GTTGACCCGACCCGACTGTTGACCGACCCGACC
Found at i:224012 original size:7 final size:7
Alignment explanation
Indices: 224002--224104 Score: 106
Period size: 7 Copynumber: 14.4 Consensus size: 7
223992 GACCCGACCC
224002 GACCGTT
1 GACCGTT
224009 GACCGTT
1 GACCGTT
224016 GACCG-T
1 GACCGTT
224022 GACCGTT
1 GACCGTT
224029 GACCG-T
1 GACCGTT
224035 GACCGTTGTT
1 GACC---GTT
**
224045 GACCCGACCC
1 GA-CCG--TT
224055 GACCGTT
1 GACCGTT
224062 GACCGTT
1 GACCGTT
224069 GACCG-T
1 GACCGTT
224075 GACCGTT
1 GACCGTT
224082 GACCG-T
1 GACCGTT
224088 GACCGTT
1 GACCGTT
224095 GACCGTT
1 GACCGTT
224102 GAC
1 GAC
224105 TTTCTTTGAC
Statistics
Matches: 82, Mismatches: 4, Indels: 20
0.77 0.04 0.19
Matches are distributed among these distances:
6 23 0.28
7 47 0.57
8 1 0.01
9 4 0.05
10 5 0.06
11 2 0.02
ACGTcount: A:0.16, C:0.32, G:0.29, T:0.23
Consensus pattern (7 bp):
GACCGTT
Found at i:224026 original size:13 final size:13
Alignment explanation
Indices: 224002--224100 Score: 114
Period size: 13 Copynumber: 7.5 Consensus size: 13
223992 GACCCGACCC
224002 GACCGTTGACCGTT
1 GACCG-TGACCGTT
224016 GACCGTGACCGTT
1 GACCGTGACCGTT
224029 GACCGTGACCGTTGTT
1 GACCGTGACC---GTT
* *
224045 GACC-CGACC--C
1 GACCGTGACCGTT
224055 GACCGTTGACCGTT
1 GACCG-TGACCGTT
224069 GACCGTGACCGTT
1 GACCGTGACCGTT
224082 GACCGTGACCGTT
1 GACCGTGACCGTT
224095 GACCGT
1 GACCGT
224101 TGACTTTCTT
Statistics
Matches: 74, Mismatches: 4, Indels: 15
0.80 0.04 0.16
Matches are distributed among these distances:
10 4 0.05
12 4 0.05
13 45 0.61
14 10 0.14
15 4 0.05
16 7 0.09
ACGTcount: A:0.15, C:0.32, G:0.29, T:0.23
Consensus pattern (13 bp):
GACCGTGACCGTT
Found at i:224033 original size:53 final size:51
Alignment explanation
Indices: 223973--224086 Score: 174
Period size: 53 Copynumber: 2.2 Consensus size: 51
223963 CGACCCGACT
223973 GTTGACCGACCCGACCGTTGACCCGACCCGACCGTTGACCGTTGACCGTGACC
1 GTTGACCGA-CCG-CCGTTGACCCGACCCGACCGTTGACCGTTGACCGTGACC
**
224026 GTTGACCGTGACCGTTGTTGACCCGACCCGACCGTTGACCGTTGACCGTGACC
1 GTTGACC--GACCGCCGTTGACCCGACCCGACCGTTGACCGTTGACCGTGACC
224079 GTTGACCG
1 GTTGACCG
224087 TGACCGTTGA
Statistics
Matches: 57, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
51 1 0.02
53 51 0.89
54 3 0.05
55 2 0.04
ACGTcount: A:0.16, C:0.36, G:0.28, T:0.20
Consensus pattern (51 bp):
GTTGACCGACCGCCGTTGACCCGACCCGACCGTTGACCGTTGACCGTGACC
Found at i:224087 original size:53 final size:53
Alignment explanation
Indices: 223989--224095 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
223979 CGACCCGACC
223989 GTTGACCCGACCCGACCGTTGACCGTTGACCGTGACCGTTGACCGTGACCGTT
1 GTTGACCCGACCCGACCGTTGACCGTTGACCGTGACCGTTGACCGTGACCGTT
224042 GTTGACCCGACCCGACCGTTGACCGTTGACCGTGACCGTTGACCGTGACCGTT
1 GTTGACCCGACCCGACCGTTGACCGTTGACCGTGACCGTTGACCGTGACCGTT
224095 G
1 G
224096 ACCGTTGACT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.15, C:0.34, G:0.29, T:0.22
Consensus pattern (53 bp):
GTTGACCCGACCCGACCGTTGACCGTTGACCGTGACCGTTGACCGTGACCGTT
Found at i:231263 original size:10 final size:10
Alignment explanation
Indices: 231234--231321 Score: 85
Period size: 10 Copynumber: 9.1 Consensus size: 10
231224 GCTGCTGGAA
231234 AACCGGTTTG
1 AACCGGTTTG
*
231244 -ACCAGTTTTG
1 AACC-GGTTTG
231254 AACCGGTTTG
1 AACCGGTTTG
*
231264 -ACCGGTTCG
1 AACCGGTTTG
231273 AACCGGTTTG
1 AACCGGTTTG
* *
231283 -ACCGATCTG
1 AACCGGTTTG
231292 AACCGGTTTG
1 AACCGGTTTG
*
231302 -ACCGGTCTG
1 AACCGGTTTG
*
231311 AACCGGGTTG
1 AACCGGTTTG
231321 A
1 A
231322 CCCGACCCGA
Statistics
Matches: 62, Mismatches: 11, Indels: 10
0.75 0.13 0.12
Matches are distributed among these distances:
9 26 0.42
10 33 0.53
11 3 0.05
ACGTcount: A:0.19, C:0.24, G:0.30, T:0.27
Consensus pattern (10 bp):
AACCGGTTTG
Found at i:231277 original size:19 final size:20
Alignment explanation
Indices: 231234--231323 Score: 123
Period size: 19 Copynumber: 4.7 Consensus size: 20
231224 GCTGCTGGAA
* *
231234 AACCGGTTTGACCAGTTTTG
1 AACCGGTTTGACCGGTTCTG
231254 AACCGGTTTGACCGGTTC-G
1 AACCGGTTTGACCGGTTCTG
*
231273 AACCGGTTTGACC-GATCTG
1 AACCGGTTTGACCGGTTCTG
231292 AACCGGTTTGACCGG-TCTG
1 AACCGGTTTGACCGGTTCTG
*
231311 AACCGGGTTGACC
1 AACCGGTTTGACC
231324 CGACCCGACT
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
18 3 0.05
19 44 0.69
20 17 0.27
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.27
Consensus pattern (20 bp):
AACCGGTTTGACCGGTTCTG
Found at i:231339 original size:17 final size:17
Alignment explanation
Indices: 231317--231374 Score: 107
Period size: 17 Copynumber: 3.4 Consensus size: 17
231307 TCTGAACCGG
*
231317 GTTGACCCGACCCGACT
1 GTTGACCCGACCCGACC
231334 GTTGACCCGACCCGACC
1 GTTGACCCGACCCGACC
231351 GTTGACCCGACCCGACC
1 GTTGACCCGACCCGACC
231368 GTTGACC
1 GTTGACC
231375 GTTGACCGTG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
17 40 1.00
ACGTcount: A:0.17, C:0.43, G:0.24, T:0.16
Consensus pattern (17 bp):
GTTGACCCGACCCGACC
Found at i:231374 original size:7 final size:7
Alignment explanation
Indices: 231364--231414 Score: 95
Period size: 7 Copynumber: 7.4 Consensus size: 7
231354 GACCCGACCC
231364 GACCGTT
1 GACCGTT
231371 GACCGTT
1 GACCGTT
231378 GACCG-T
1 GACCGTT
231384 GACCGTT
1 GACCGTT
231391 GACCGTT
1 GACCGTT
231398 GACCGTT
1 GACCGTT
231405 GACCGTT
1 GACCGTT
231412 GAC
1 GAC
231415 TTTCTTTGAC
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.14
7 37 0.86
ACGTcount: A:0.16, C:0.29, G:0.29, T:0.25
Consensus pattern (7 bp):
GACCGTT
Found at i:236678 original size:13 final size:13
Alignment explanation
Indices: 236660--236684 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
236650 TGAAATAGTG
236660 TTTTTTTTCTCTC
1 TTTTTTTTCTCTC
236673 TTTTTTTTCTCT
1 TTTTTTTTCTCT
236685 TTGGAAAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTTTTTCTCTC
Found at i:237692 original size:21 final size:22
Alignment explanation
Indices: 237652--237704 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
237642 TTTTCCAGAA
* *
237652 TGCTACAGAGGTATCGATACCC-
1 TGCTACAG-TGTACCGATACCCT
237674 TGCTACAGTGTACCGATACCCT
1 TGCTACAGTGTACCGATACCCT
237696 TGCTACAGT
1 TGCTACAGT
237705 AATTTCGTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 11 0.39
22 17 0.61
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (22 bp):
TGCTACAGTGTACCGATACCCT
Found at i:269321 original size:22 final size:23
Alignment explanation
Indices: 269284--269336 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 23
269274 AGTGGAGTGG
* *
269284 ATAATAAATT-TTTTAAATAATA
1 ATAATAAATTGATTAAAATAATA
*
269306 TTAATAAATTGATTAAAATAATA
1 ATAATAAATTGATTAAAATAATA
269329 ATAA-AAAT
1 ATAATAAAT
269337 GTCACATAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
22 13 0.50
23 13 0.50
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (23 bp):
ATAATAAATTGATTAAAATAATA
Found at i:278531 original size:31 final size:31
Alignment explanation
Indices: 278496--278572 Score: 129
Period size: 31 Copynumber: 2.5 Consensus size: 31
278486 TTGTTTGAAA
278496 GTGAAAATATACAAAAAAAAAAGTTGACATT
1 GTGAAAATATACAAAAAAAAAAGTTGACATT
*
278527 GTGAAAATATAC-AAAAAAAAGGTTGACATT
1 GTGAAAATATACAAAAAAAAAAGTTGACATT
278557 GTGAAAAATATACAAA
1 GTG-AAAATATACAAA
278573 TGTGGTCACC
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
30 20 0.47
31 21 0.49
32 2 0.05
ACGTcount: A:0.57, C:0.06, G:0.14, T:0.22
Consensus pattern (31 bp):
GTGAAAATATACAAAAAAAAAAGTTGACATT
Found at i:281655 original size:2 final size:2
Alignment explanation
Indices: 281648--281681 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
281638 TTATTATTAT
281648 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
281682 AGGAAATAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:283306 original size:28 final size:26
Alignment explanation
Indices: 283228--283299 Score: 126
Period size: 26 Copynumber: 2.7 Consensus size: 26
283218 CAGTCTCTTC
*
283228 TAATAAAAATAAGGTTTTTTCTTGATT
1 TAATGAAAA-AAGGTTTTTTCTTGATT
283255 TAATGAAAAAAGGTTTTTTCTTGATT
1 TAATGAAAAAAGGTTTTTTCTTGATT
283281 TAATGAAAAAAGGTTTTTT
1 TAATGAAAAAAGGTTTTTT
283300 TTCTTGAAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
26 36 0.82
27 8 0.18
ACGTcount: A:0.38, C:0.03, G:0.14, T:0.46
Consensus pattern (26 bp):
TAATGAAAAAAGGTTTTTTCTTGATT
Found at i:291188 original size:51 final size:51
Alignment explanation
Indices: 291090--291189 Score: 130
Period size: 51 Copynumber: 2.0 Consensus size: 51
291080 ACCCTTTGCA
* * **
291090 GTAAGGCGCGCCCCCTGCAGCGCGTTTTACGCTGATATGGTGCCACGTGGG
1 GTAAGGCGCGCCCCCTGCAGCGCGCTTTACGCTGACATGGAACCACGTGGG
* *
291141 GTAAGGTGTGCCCCCTGCAGCGCGCTTTACGCTGACAT-GAACACACGTG
1 GTAAGGCGCGCCCCCTGCAGCGCGCTTTACGCTGACATGGAAC-CACGTG
291190 TCTAAAGCGC
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 2 0.05
51 40 0.95
ACGTcount: A:0.17, C:0.30, G:0.32, T:0.21
Consensus pattern (51 bp):
GTAAGGCGCGCCCCCTGCAGCGCGCTTTACGCTGACATGGAACCACGTGGG
Found at i:293004 original size:64 final size:64
Alignment explanation
Indices: 292889--293027 Score: 156
Period size: 64 Copynumber: 2.2 Consensus size: 64
292879 CATAAGGTGT
* ** * *
292889 ATCGATGCACTCTTTTAAAATAAAAACATCGAATGTCATTAGTGTATCGATGCACAAG-TAGTGC
1 ATCGATGCACCCCCTTAAAATAAAAACATCGAATGGCATTAGTGTACCGATGCA-AAGATAGTGC
* * * * *
292953 ATCGATGCACCCCCTTAAAATACAAACATCGCATGGGATTTA-TGTACCGATGCATAGATTGTGC
1 ATCGATGCACCCCCTTAAAATAAAAACATCGAATGGCA-TTAGTGTACCGATGCAAAGATAGTGC
293017 ATCGATGCACC
1 ATCGATGCACC
293028 GTCAAGGGAT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
63 2 0.03
64 58 0.92
65 3 0.05
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (64 bp):
ATCGATGCACCCCCTTAAAATAAAAACATCGAATGGCATTAGTGTACCGATGCAAAGATAGTGC
Found at i:293624 original size:18 final size:18
Alignment explanation
Indices: 293601--293673 Score: 74
Period size: 18 Copynumber: 3.9 Consensus size: 18
293591 AGGGATTATC
*
293601 AGTGGTCCTTTGGGACAT
1 AGTGGTCCTTCGGGACAT
* * *
293619 AGTGGTTCTTCAGAACAAT
1 AGTGGTCCTTCGGGAC-AT
*
293638 CAGTGGTTCTTCGGGACAT
1 -AGTGGTCCTTCGGGACAT
*
293657 AGTGGTCCTTTGGGACA
1 AGTGGTCCTTCGGGACA
293674 AATATTCAGT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
18 27 0.60
19 4 0.09
20 14 0.31
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.32
Consensus pattern (18 bp):
AGTGGTCCTTCGGGACAT
Found at i:293931 original size:2 final size:2
Alignment explanation
Indices: 293924--293954 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
293914 AATGCATTGT
*
293924 TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
293955 TATGCGTCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:296255 original size:25 final size:26
Alignment explanation
Indices: 296211--296266 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
296201 TATATCTGCA
*
296211 AAAAAATTTAAATAAATAAA-ATATT
1 AAAAAATTTAAATAAATAAATAAATT
* **
296236 AAAACATTTAAATACTTAAATAAATT
1 AAAAAATTTAAATAAATAAATAAATT
296262 AAAAA
1 AAAAA
296267 CAAAATATTA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (26 bp):
AAAAAATTTAAATAAATAAATAAATT
Found at i:304833 original size:20 final size:20
Alignment explanation
Indices: 304808--304846 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
304798 ATGAAACTTT
304808 GACATAAAAACTCAAAGATC
1 GACATAAAAACTCAAAGATC
*
304828 GACATAAAAATTCAAAGAT
1 GACATAAAAACTCAAAGAT
304847 TGACTTGATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.56, C:0.15, G:0.10, T:0.18
Consensus pattern (20 bp):
GACATAAAAACTCAAAGATC
Found at i:305037 original size:42 final size:42
Alignment explanation
Indices: 304978--305088 Score: 125
Period size: 42 Copynumber: 2.6 Consensus size: 42
304968 TATTTTTCTC
* *
304978 ATTTTTCTGTGTTTGATAGCTGAAAATTCCTTTT-CGAAAAAT
1 ATTTTTCAGTGTTTGATAGCTG-AAATTACTTTTACGAAAAAT
* * * * *
305020 ATTTTTCGGTGTTTGATAGATGTAATTAGTTTTATGAAAAAT
1 ATTTTTCAGTGTTTGATAGCTGAAATTACTTTTACGAAAAAT
* *
305062 ATTTTTCAGTGTTTGATTGCTGTAATT
1 ATTTTTCAGTGTTTGATAGCTGAAATT
305089 GATTTTTCAA
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
41 8 0.14
42 51 0.86
ACGTcount: A:0.27, C:0.07, G:0.17, T:0.49
Consensus pattern (42 bp):
ATTTTTCAGTGTTTGATAGCTGAAATTACTTTTACGAAAAAT
Found at i:321663 original size:23 final size:23
Alignment explanation
Indices: 321590--321663 Score: 87
Period size: 23 Copynumber: 3.2 Consensus size: 23
321580 TTTAATAAAT
*
321590 AAACAAACATAAACGAACACGAAC
1 AAACGAACATAAACGAACAC-AAC
* * *
321614 GAACGAACATAAACAAACACAAT
1 AAACGAACATAAACGAACACAAC
321637 AAACGAACATAAACGAACA-ACAC
1 AAACGAACATAAACGAACACA-AC
321660 AAAC
1 AAAC
321664 ACACAAAAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
22 1 0.02
23 24 0.57
24 17 0.40
ACGTcount: A:0.62, C:0.24, G:0.08, T:0.05
Consensus pattern (23 bp):
AAACGAACATAAACGAACACAAC
Found at i:326368 original size:29 final size:31
Alignment explanation
Indices: 326333--326427 Score: 101
Period size: 29 Copynumber: 3.2 Consensus size: 31
326323 TTTAAGAATT
**
326333 TTAAAAATAAAAATTATTTTAAT-TTAAA-A
1 TTAAAAATAAAAATTATTAAAATATTAAATA
* *
326362 TTTAAAATTAAAATTATTAAAATATTAAATA
1 TTAAAAATAAAAATTATTAAAATATTAAATA
* *
326393 TTAAAAATAAAAA--A-TAAAAAATAAAATA
1 TTAAAAATAAAAATTATTAAAATATTAAATA
326421 TTAAAAA
1 TTAAAAA
326428 ATTGAATATA
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 19 0.34
29 20 0.36
30 5 0.09
31 12 0.21
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (31 bp):
TTAAAAATAAAAATTATTAAAATATTAAATA
Found at i:326368 original size:30 final size:30
Alignment explanation
Indices: 326323--326405 Score: 89
Period size: 29 Copynumber: 2.7 Consensus size: 30
326313 CAAATGTTTT
**
326323 TTTAAGAATTTTAAAAATAAAAATTATTTTAA
1 TTTAA-AA-TTTAAAAATAAAAATTATTAAAA
*
326355 TTTAAAATTT-AAAATTAAAATTATTAAAA
1 TTTAAAATTTAAAAATAAAAATTATTAAAA
326384 TATT-AAATATTAAAAATAAAAA
1 T-TTAAAAT-TTAAAAATAAAAA
326406 ATAAAAAATA
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
29 21 0.48
30 7 0.16
31 11 0.25
32 5 0.11
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (30 bp):
TTTAAAATTTAAAAATAAAAATTATTAAAA
Found at i:326382 original size:9 final size:8
Alignment explanation
Indices: 326356--326457 Score: 60
Period size: 7 Copynumber: 13.4 Consensus size: 8
326346 TTATTTTAAT
326356 TTAAAAT-
1 TTAAAATA
326363 TT-AAA-A
1 TTAAAATA
326369 TTAAAATTA
1 TTAAAA-TA
326378 TTAAAATA
1 TTAAAATA
326386 TT-AAATA
1 TTAAAATA
326393 TTAAAA-A
1 TTAAAATA
326400 -TAAAA-A
1 TTAAAATA
*
326406 ATAAAA-A
1 TTAAAATA
*
326413 ATAAAATA
1 TTAAAATA
*
326421 TTAAAAAA
1 TTAAAATA
*
326429 TT-GAATA
1 TTAAAATA
*
326436 TATATATATA
1 T-TA-AAATA
326446 TTAAAAATA
1 TT-AAAATA
326455 TTA
1 TTA
326458 TAAAAAAATT
Statistics
Matches: 77, Mismatches: 7, Indels: 21
0.73 0.07 0.20
Matches are distributed among these distances:
6 11 0.14
7 29 0.38
8 18 0.23
9 14 0.18
10 5 0.06
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (8 bp):
TTAAAATA
Found at i:326427 original size:15 final size:15
Alignment explanation
Indices: 326357--326429 Score: 73
Period size: 14 Copynumber: 5.1 Consensus size: 15
326347 TATTTTAATT
*
326357 TAAAAT-TT-AAAAT
1 TAAAATATTAAAAAA
*
326370 TAAAATTATTAAAATA
1 TAAAA-TATTAAAAAA
*
326386 TTAAATATT-AAAAA
1 TAAAATATTAAAAAA
*
326400 TAAAA-AATAAAAAA
1 TAAAATATTAAAAAA
326414 TAAAATATTAAAAAA
1 TAAAATATTAAAAAA
326429 T
1 T
326430 TGAATATATA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
13 7 0.15
14 19 0.40
15 15 0.31
16 7 0.15
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
TAAAATATTAAAAAA
Found at i:326435 original size:15 final size:15
Alignment explanation
Indices: 326365--326436 Score: 67
Period size: 15 Copynumber: 4.8 Consensus size: 15
326355 TTTAAAATTT
326365 AAAATTAAAATTATTAA
1 AAAATT-AAA-TATTAA
*
326382 AATATTAAATATT-A
1 AAAATTAAATATTAA
* *
326396 AAAA-TAAAAAATAA
1 AAAATTAAATATTAA
*
326410 AAAATAAAATATTAA
1 AAAATTAAATATTAA
*
326425 AAAATTGAATAT
1 AAAATTAAATAT
326437 ATATATATAT
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
13 6 0.14
14 9 0.20
15 21 0.48
16 3 0.07
17 5 0.11
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.31
Consensus pattern (15 bp):
AAAATTAAATATTAA
Found at i:326863 original size:2 final size:2
Alignment explanation
Indices: 326856--326880 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
326846 TATACCTAAT
326856 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
326881 GTTATGGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:332170 original size:19 final size:19
Alignment explanation
Indices: 332148--332197 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
332138 AATCGGATAA
332148 TTTAATAAAATATTTGTAT
1 TTTAATAAAATATTTGTAT
*
332167 TTTAATAAAATATTTTTAT
1 TTTAATAAAATATTTGTAT
332186 TTTAATAAAATA
1 TTTAATAAAATA
332198 CCAAGTTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (19 bp):
TTTAATAAAATATTTGTAT
Found at i:334569 original size:81 final size:85
Alignment explanation
Indices: 334429--334595 Score: 281
Period size: 81 Copynumber: 2.0 Consensus size: 85
334419 TTAATTTTTT
334429 ATTCTCATCATCACTACAATTTTTTTAAATAAATTGTTCATTTTTGTTCGAAAAAATCGGTTGAA
1 ATTCTCATCATCACTACAA-TTTTTTAAATAAATTGTTCATTTTTGTTCGAAAAAATCGGTTGAA
334494 AC-TGCTTTTTCATATATAAAA
65 ACTTGCTTTTTCATATA-AAAA
334515 ATTCTCATCATCA-TACAA-TTTTT-AA-AAATTGTTCATTTTTGTTCGAAAAAATCGGTTGAAA
1 ATTCTCATCATCACTACAATTTTTTAAATAAATTGTTCATTTTTGTTCGAAAAAATCGGTTGAAA
334576 CTTGCTTTTTCATATAAAAA
66 CTTGCTTTTTCATATAAAAA
334596 TTAAATTTTA
Statistics
Matches: 80, Mismatches: 0, Indels: 7
0.92 0.00 0.08
Matches are distributed among these distances:
81 41 0.51
82 16 0.20
83 5 0.06
85 5 0.06
86 13 0.16
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.43
Consensus pattern (85 bp):
ATTCTCATCATCACTACAATTTTTTAAATAAATTGTTCATTTTTGTTCGAAAAAATCGGTTGAAA
CTTGCTTTTTCATATAAAAA
Found at i:337788 original size:18 final size:19
Alignment explanation
Indices: 337758--337798 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
337748 TTTTTTGCGC
337758 GAGAGATGAAGGTAT-AAG
1 GAGAGATGAAGGTATGAAG
*
337776 GAGAGAT-ATAGGTGTGAAG
1 GAGAGATGA-AGGTATGAAG
337795 GAGA
1 GAGA
337799 AGGAATCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 1 0.05
18 12 0.60
19 7 0.35
ACGTcount: A:0.41, C:0.00, G:0.41, T:0.17
Consensus pattern (19 bp):
GAGAGATGAAGGTATGAAG
Found at i:346620 original size:17 final size:17
Alignment explanation
Indices: 346598--346652 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
346588 TATCATAAAA
346598 TATATTTTTATTTTAAT
1 TATATTTTTATTTTAAT
* *
346615 TATATTATTATTTGTATTTT
1 TATATTTTTATTT-TA--AT
*
346635 TATATTTTTATTATAAT
1 TATATTTTTATTTTAAT
346652 T
1 T
346653 TAAATTGATA
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
17 14 0.47
18 2 0.07
19 2 0.07
20 12 0.40
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (17 bp):
TATATTTTTATTTTAAT
Found at i:346846 original size:18 final size:18
Alignment explanation
Indices: 346818--346874 Score: 57
Period size: 17 Copynumber: 3.2 Consensus size: 18
346808 TTATTATAAG
346818 ATTCA-AATATTAAAAAT
1 ATTCATAATATTAAAAAT
*
346835 ATTGATAATATTAATAAAAT
1 ATTCATAATATT-A-AAAAT
346855 ACTTCAT-ATA-TAAAAAT
1 A-TTCATAATATTAAAAAT
346872 ATT
1 ATT
346875 ATTAGTGAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
16 2 0.06
17 10 0.29
18 7 0.21
19 2 0.06
20 9 0.26
21 4 0.12
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (18 bp):
ATTCATAATATTAAAAAT
Found at i:348240 original size:17 final size:17
Alignment explanation
Indices: 348218--348264 Score: 85
Period size: 17 Copynumber: 2.7 Consensus size: 17
348208 TTCGAAGTTT
348218 AACTCAATTGAAGTTCA
1 AACTCAATTGAAGTTCA
348235 AACTCAATTGAAGTTCA
1 AACTCAATTGAAGTTCA
348252 AACTCAACTTGAA
1 AACTCAA-TTGAA
348265 CCCCAACCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
17 24 0.83
18 5 0.17
ACGTcount: A:0.43, C:0.19, G:0.11, T:0.28
Consensus pattern (17 bp):
AACTCAATTGAAGTTCA
Found at i:359309 original size:187 final size:187
Alignment explanation
Indices: 358994--359369 Score: 707
Period size: 187 Copynumber: 2.0 Consensus size: 187
358984 GTTTTAACCA
358994 TTGCCAACATTTGTAATAATCATGGAATGTTTTACAGCATCATGTGGCTGGCTGGCTGTCTAAAA
1 TTGCCAACATTTGTAATAATCATGGAATGTTTTACAGCATCATGTGGCTGGCTGGCTGTCTAAAA
*
359059 TAAATCCAAAGAAAGAATAGAGGTACTTATTTGTTTCGCCAAAGCAAAAGCACGAGGGAGGAGGA
66 TAAATCCAAAGAAAGAATAGAAGTACTTATTTGTTTCGCCAAAGCAAAAGCACGAGGGAGGAGGA
*
359124 CAATTTGGTTCTGCTTTATATTTGATGCCAAATGCAATGACGCATACCTTTTACATT
131 CAAGTTGGTTCTGCTTTATATTTGATGCCAAATGCAATGACGCATACCTTTTACATT
*
359181 TTGCCAACATTTGTAATAATCATGGAATGTTTTACAGCATCATGTGGCTGGCTGGCTGTTTAAAA
1 TTGCCAACATTTGTAATAATCATGGAATGTTTTACAGCATCATGTGGCTGGCTGGCTGTCTAAAA
*
359246 TAAATCCAAAGAAATAATAGAAGTACTTATTTGTTTCGCCAAAGCAAAAGCACGAGGGAGGAGGA
66 TAAATCCAAAGAAAGAATAGAAGTACTTATTTGTTTCGCCAAAGCAAAAGCACGAGGGAGGAGGA
*
359311 CAAGTTGGTTCTGCTTTATATTTGATGCCAAATGCAATGATGCATACCTTTTACATT
131 CAAGTTGGTTCTGCTTTATATTTGATGCCAAATGCAATGACGCATACCTTTTACATT
359368 TT
1 TT
359370 TACTTTAATG
Statistics
Matches: 184, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
187 184 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.31
Consensus pattern (187 bp):
TTGCCAACATTTGTAATAATCATGGAATGTTTTACAGCATCATGTGGCTGGCTGGCTGTCTAAAA
TAAATCCAAAGAAAGAATAGAAGTACTTATTTGTTTCGCCAAAGCAAAAGCACGAGGGAGGAGGA
CAAGTTGGTTCTGCTTTATATTTGATGCCAAATGCAATGACGCATACCTTTTACATT
Found at i:361490 original size:16 final size:15
Alignment explanation
Indices: 361464--361493 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
361454 CGTCGGAGGC
361464 GGCGAGAGGCGATGA
1 GGCGAGAGGCGATGA
361479 GGCGACGAGGCGATG
1 GGCGA-GAGGCGATG
361494 CTTTTAGCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.23, C:0.17, G:0.53, T:0.07
Consensus pattern (15 bp):
GGCGAGAGGCGATGA
Found at i:378755 original size:6 final size:6
Alignment explanation
Indices: 378746--378773 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
378736 TTTTTTATTT
378746 CTTTCA CTTTCA CTTTCA CTTTCA CTTT
1 CTTTCA CTTTCA CTTTCA CTTTCA CTTT
378774 TTATTTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.32, G:0.00, T:0.54
Consensus pattern (6 bp):
CTTTCA
Found at i:378782 original size:4 final size:4
Alignment explanation
Indices: 378773--378799 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
378763 ACTTTCACTT
378773 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
378800 TCTTACCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:380349 original size:50 final size:48
Alignment explanation
Indices: 380291--380415 Score: 124
Period size: 50 Copynumber: 2.5 Consensus size: 48
380281 TTAGCAAAAA
* * ** *
380291 AGCGCGCCCCATGTACCGCGCTATATGCTGATTTGGTGCCACGTGGGTAT
1 AGCGCGCCCC-TG-ACCGCGCTATACGCTGATCTGACGCCACATGGGTAT
* * *
380341 AGCGCGCCCTCTGCCCCGCGATATACGGTGATCTGACGCCACATGGGTAT
1 AGCGCGCCC-CTG-ACCGCGCTATACGCTGATCTGACGCCACATGGGTAT
*
380391 AGCGCTCCCCTGATCCGCGCTATAC
1 AGCGCGCCCCTGA-CCGCGCTATAC
380416 CTGGATATCT
Statistics
Matches: 61, Mismatches: 12, Indels: 5
0.78 0.15 0.06
Matches are distributed among these distances:
49 13 0.21
50 47 0.77
51 1 0.02
ACGTcount: A:0.17, C:0.34, G:0.27, T:0.22
Consensus pattern (48 bp):
AGCGCGCCCCTGACCGCGCTATACGCTGATCTGACGCCACATGGGTAT
Found at i:380551 original size:10 final size:10
Alignment explanation
Indices: 380536--380596 Score: 81
Period size: 10 Copynumber: 6.1 Consensus size: 10
380526 TTTATCACAC
380536 CAAATTCTCT
1 CAAATTCTCT
380546 CAAATTCTCT
1 CAAATTCTCT
380556 -AAATTTCTCT
1 CAAA-TTCTCT
380566 CAAATTCTCT
1 CAAATTCTCT
380576 -AAATTTCTCT
1 CAAA-TTCTCT
*
380586 CAAATACTCT
1 CAAATTCTCT
380596 C
1 C
380597 TTTTTAAGGT
Statistics
Matches: 46, Mismatches: 1, Indels: 8
0.84 0.02 0.15
Matches are distributed among these distances:
9 6 0.13
10 34 0.74
11 6 0.13
ACGTcount: A:0.31, C:0.28, G:0.00, T:0.41
Consensus pattern (10 bp):
CAAATTCTCT
Found at i:380565 original size:20 final size:20
Alignment explanation
Indices: 380540--380595 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
380530 TCACACCAAA
380540 TTCTCTCAAATTCTCTAAAT
1 TTCTCTCAAATTCTCTAAAT
380560 TTCTCTCAAATTCTCTAAAT
1 TTCTCTCAAATTCTCTAAAT
*
380580 TTCTCTCAAATACTCT
1 TTCTCTCAAATTCTCT
380596 CTTTTTAAGG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.29, C:0.27, G:0.00, T:0.45
Consensus pattern (20 bp):
TTCTCTCAAATTCTCTAAAT
Found at i:380914 original size:111 final size:111
Alignment explanation
Indices: 380720--380941 Score: 390
Period size: 111 Copynumber: 2.0 Consensus size: 111
380710 TGGAAATCAT
* *
380720 ATATCTCTACACTTTGCTGATACGGTAACATTTTAACATTTTAATGTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTAATACGGTAACATTTTAACATTTTAATGTAATTTAAATTATTAGTAA
* *
380785 TATTTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTCATTTAATGCATGATTATTAGATTAAGAATTAA
* *
380831 ATATCTCGACACTTTGCTAATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTAATACGGTAACATTTTAACATTTTAATGTAATTTAAATTATTAGTAA
380896 TAATTAGTTGATTCATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTCATTTAATGCATGATTATTAGATTAAGAATTAA
380942 TTTTTGTAAT
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
111 105 1.00
ACGTcount: A:0.36, C:0.09, G:0.11, T:0.44
Consensus pattern (111 bp):
ATATCTCGACACTTTGCTAATACGGTAACATTTTAACATTTTAATGTAATTTAAATTATTAGTAA
TAATTAGTTGATTCATTTAATGCATGATTATTAGATTAAGAATTAA
Found at i:382478 original size:18 final size:18
Alignment explanation
Indices: 382454--382503 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
382444 CACTGCAGCC
382454 ATATATGATGCCGCAACT
1 ATATATGATGCCGCAACT
*
382472 TTATATGATGCCGCAACT
1 ATATATGATGCCGCAACT
382490 ATATATGATGCCGC
1 ATATATGATGCCGC
382504 CATCGCCTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (18 bp):
ATATATGATGCCGCAACT
Found at i:393003 original size:20 final size:20
Alignment explanation
Indices: 392961--393003 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
392951 TAACTTTTTC
*
392961 TTTTATCTTTCATTATTAGT
1 TTTTATCTTTCATTATTACT
*
392981 TTTTCTCTTTCATT-TTAACT
1 TTTTATCTTTCATTATT-ACT
393001 TTT
1 TTT
393004 ACCTTTTCTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 2 0.10
20 18 0.90
ACGTcount: A:0.16, C:0.14, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTTATCTTTCATTATTACT
Found at i:398773 original size:50 final size:50
Alignment explanation
Indices: 398670--398782 Score: 163
Period size: 50 Copynumber: 2.3 Consensus size: 50
398660 GCCCCTGATT
* * *
398670 CAGGGGACGCGCTATACCCACGTGGCGCCAAATCAGCATATAACACGGGG
1 CAGGGGGCGCGCTATACCCACGTGACGCCAAATCAGCATATAACACGAGG
* * *
398720 CAGGGGGCGCGCTATACCCATGTGACGCCAAATCAGCATATAACGCGATG
1 CAGGGGGCGCGCTATACCCACGTGACGCCAAATCAGCATATAACACGAGG
*
398770 CAGGGGGCACGCT
1 CAGGGGGCGCGCT
398783 TTCCTGCTAA
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 56 1.00
ACGTcount: A:0.27, C:0.29, G:0.31, T:0.13
Consensus pattern (50 bp):
CAGGGGGCGCGCTATACCCACGTGACGCCAAATCAGCATATAACACGAGG
Found at i:403812 original size:30 final size:29
Alignment explanation
Indices: 403762--403844 Score: 87
Period size: 30 Copynumber: 2.8 Consensus size: 29
403752 AAATTTTAAC
** *
403762 TTAACCCTGAAATTTTAGATAGAATACTAGT
1 TTAACCCT-AAAACTTAGATA-AATACTAAT
*
403793 TTAACCCTAAAACTTAGATAAATATTAAT
1 TTAACCCTAAAACTTAGATAAATACTAAT
403822 TTAACCCCT-AAACTATAGATAAA
1 TTAA-CCCTAAAACT-TAGATAAA
403845 ATATTTTATC
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
29 16 0.35
30 22 0.48
31 8 0.17
ACGTcount: A:0.45, C:0.16, G:0.07, T:0.33
Consensus pattern (29 bp):
TTAACCCTAAAACTTAGATAAATACTAAT
Found at i:419181 original size:339 final size:343
Alignment explanation
Indices: 418770--419422 Score: 1023
Period size: 355 Copynumber: 1.9 Consensus size: 343
418760 AATTTTTTTT
*
418770 AATTAAGTACTAAAATGAAATAAAAATAATAGTTTAAATACTAAACACATAATTTATCTTTAAAA
1 AATTAAGTACTAAAATGAAATAAAAATAATAGTTTAAACACTAAACACATAATTTATCTTTAAAA
418835 ATGATATAGTATAATAGTTCATAAACCTTAAATTTCA-TT-TC-A-AAACAAATAAATTGACATT
66 ATGATATAGTATAATAGTTCATAAACCTTAAATTTCATTTATCTATAAACAAATAAATTGACATT
418896 CATTTAAATTTTCATCTACTTTT-TTTTACAAATATTGATATATAATTTGATA-TTTAAAAAACA
131 CATTTAAATTTTCATCTA-TTTTATTTTACAAATATTGATATATAATTTGATATTTTAAAAAA-A
* * * *
418959 CTTATATATAAAAACTTTAAAATTATTAGAAATAGAATCATTGAGCGACCTCAATTGTTAACA-A
194 ATTATATATAAAAACTTTAAAATTATTAGAAATAGAATCATTGAGCGACATCAACTATTAA-AGA
*
419023 ATATCTATAGGGTGTGTGCATTGTTAATAGTCACCAAATTAAAAATAAAACTTAAACTAAACGTT
258 ATATCTATAGGGTGTGTGCATTATTAATAGTCACCAAATTAAAAATAAAACTTAAACTAAACGTT
419088 AGATATTATTTTTTTAAAAAA
323 AGATATTATTTTTTTAAAAAA
* *
419109 AATTAGGTACTAAAATGACATAAAAATAATAGTTTAAACACTAAACACATAATTTATCTTTAAAA
1 AATTAAGTACTAAAATGAAATAAAAATAATAGTTTAAACACTAAACACATAATTTATCTTTAAAA
419174 ATGATATAGTATAATAGTTCATAAACCTTAAATTTCATTTTTGATCTTTTATTTTGAAACAAATA
66 ATGATATAGTATAATAGTTCATAAACCTTAAATTTCA--TTT-ATC---TA---T-AAACAAATA
*
419239 AATTGACATTCGTTTAAATTTTCATCTATTTTATTTTACAAATATTGATATATAATTTGATATTT
121 AATTGACATTCATTTAAATTTTCATCTATTTTATTTTACAAATATTGATATATAATTTGATA--T
*
419304 TTTAAAAAAAATTATATATAAAAACTTTAAGATTATTAGAAATAGAATCATTGAGCGACATCAAC
184 TTTAAAAAAAATTATATATAAAAACTTTAAAATTATTAGAAATAGAATCATTGAGCGACATCAAC
*
419369 TATTAAAGAATGTCTATAGGGTGTGTGCATTATTAATAGTCACCAAATTAAAAA
249 TATTAAAGAATATCTATAGGGTGTGTGCATTATTAATAGTCACCAAATTAAAAA
419423 ATATACAAAT
Statistics
Matches: 284, Mismatches: 11, Indels: 22
0.90 0.03 0.07
Matches are distributed among these distances:
339 99 0.35
342 2 0.01
344 2 0.01
348 1 0.00
352 4 0.01
353 65 0.23
354 1 0.00
355 101 0.36
356 9 0.03
ACGTcount: A:0.45, C:0.10, G:0.08, T:0.38
Consensus pattern (343 bp):
AATTAAGTACTAAAATGAAATAAAAATAATAGTTTAAACACTAAACACATAATTTATCTTTAAAA
ATGATATAGTATAATAGTTCATAAACCTTAAATTTCATTTATCTATAAACAAATAAATTGACATT
CATTTAAATTTTCATCTATTTTATTTTACAAATATTGATATATAATTTGATATTTTAAAAAAAAT
TATATATAAAAACTTTAAAATTATTAGAAATAGAATCATTGAGCGACATCAACTATTAAAGAATA
TCTATAGGGTGTGTGCATTATTAATAGTCACCAAATTAAAAATAAAACTTAAACTAAACGTTAGA
TATTATTTTTTTAAAAAA
Found at i:420463 original size:22 final size:22
Alignment explanation
Indices: 420422--420488 Score: 116
Period size: 22 Copynumber: 3.0 Consensus size: 22
420412 CTCGTATAAA
420422 TGCACCGAAGTGCCCCGTAGAAT
1 TGCACCGAAGTG-CCCGTAGAAT
420445 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
*
420467 TGCACCGTAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
420489 GATGTCCATA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
22 31 0.72
23 12 0.28
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.19
Consensus pattern (22 bp):
TGCACCGAAGTGCCCGTAGAAT
Found at i:422206 original size:21 final size:21
Alignment explanation
Indices: 422182--422226 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
422172 TCTTGTTCGT
* *
422182 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
422203 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
422224 TTG
1 TTG
422227 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:424157 original size:35 final size:35
Alignment explanation
Indices: 424084--424158 Score: 123
Period size: 35 Copynumber: 2.1 Consensus size: 35
424074 CGTCACTAAC
**
424084 AGTAAGGCCCTGAGCACACAGCCGAGGAACCGGTA
1 AGTAAGGCCCTGAGCACACAGCCGAGGAACCGCCA
*
424119 AGTAAGGCCCTGAGCACACAGCCGAGGAACCTCCA
1 AGTAAGGCCCTGAGCACACAGCCGAGGAACCGCCA
424154 AGTAA
1 AGTAA
424159 TCTTCCTCCA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.33, C:0.29, G:0.28, T:0.09
Consensus pattern (35 bp):
AGTAAGGCCCTGAGCACACAGCCGAGGAACCGCCA
Found at i:424262 original size:24 final size:24
Alignment explanation
Indices: 424235--424309 Score: 116
Period size: 24 Copynumber: 3.2 Consensus size: 24
424225 CATAATTCAA
*
424235 GTCAAGTATCATATCAGAATCCAG
1 GTCAAGTATCAGATCAGAATCCAG
* *
424259 GTCATGTATCAGATCAGAATCCAT
1 GTCAAGTATCAGATCAGAATCCAG
424283 GTCAA-TATCAGATCAGAATCCAG
1 GTCAAGTATCAGATCAGAATCCAG
424306 GTCA
1 GTCA
424310 GGATCATAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
23 21 0.46
24 25 0.54
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.25
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCCAG
Found at i:424315 original size:23 final size:23
Alignment explanation
Indices: 424239--424315 Score: 109
Period size: 23 Copynumber: 3.3 Consensus size: 23
424229 ATTCAAGTCA
*
424239 AGTATCATATCAGAATCCAGGTC
1 AGTATCAGATCAGAATCCAGGTC
*
424262 ATGTATCAGATCAGAATCCATGTC
1 A-GTATCAGATCAGAATCCAGGTC
*
424286 AATATCAGATCAGAATCCAGGTC
1 AGTATCAGATCAGAATCCAGGTC
*
424309 AGGATCA
1 AGTATCA
424316 TAATAGAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
23 26 0.55
24 21 0.45
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (23 bp):
AGTATCAGATCAGAATCCAGGTC
Found at i:424342 original size:47 final size:47
Alignment explanation
Indices: 424218--424331 Score: 124
Period size: 47 Copynumber: 2.4 Consensus size: 47
424208 TATATAAAAA
* * * * *
424218 ATCAAAACATAATTCAAGTCAAGTATCATATCAGAATCCAGGTCATGT
1 ATCAAATCAGAATCCAAGTCAA-TATCAGATCAGAATCCAGGTCATGG
* *
424266 ATCAGATCAGAATCCATGTCAATATCAGATCAGAATCCAGGTCA-GG
1 ATCAAATCAGAATCCAAGTCAATATCAGATCAGAATCCAGGTCATGG
*
424312 ATCATAAT-AGAATTCAAGTC
1 ATCA-AATCAGAATCCAAGTC
424332 GGAAATCAGA
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
46 15 0.27
47 23 0.42
48 17 0.31
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.25
Consensus pattern (47 bp):
ATCAAATCAGAATCCAAGTCAATATCAGATCAGAATCCAGGTCATGG
Found at i:425490 original size:18 final size:18
Alignment explanation
Indices: 425469--425504 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
425459 CTTCCATCCG
*
425469 ATCTTATTATTTAATTCA
1 ATCTTATCATTTAATTCA
*
425487 ATCTTATCATTTACTTCA
1 ATCTTATCATTTAATTCA
425505 GTCCTTTCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.53
Consensus pattern (18 bp):
ATCTTATCATTTAATTCA
Found at i:426839 original size:8 final size:7
Alignment explanation
Indices: 426798--426836 Score: 69
Period size: 7 Copynumber: 5.4 Consensus size: 7
426788 TGGTCAACTC
426798 CGGTCAA
1 CGGTCAA
426805 CGGTCAA
1 CGGTCAA
426812 CGGTCAA
1 CGGTCAA
426819 CGGTCAA
1 CGGTCAA
426826 CGGGTCAA
1 C-GGTCAA
426834 CGG
1 CGG
426837 GTCGGGTCGG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 24 0.77
8 7 0.23
ACGTcount: A:0.26, C:0.28, G:0.33, T:0.13
Consensus pattern (7 bp):
CGGTCAA
Found at i:426844 original size:13 final size:13
Alignment explanation
Indices: 426839--426887 Score: 80
Period size: 13 Copynumber: 3.8 Consensus size: 13
426829 GTCAACGGGT
*
426839 CGGGTCGGGTCAA
1 CGGGTCGGGTAAA
*
426852 CTGGTCGGGTAAA
1 CGGGTCGGGTAAA
426865 CGGGTCGGGTAAA
1 CGGGTCGGGTAAA
426878 CGGGTCGGGT
1 CGGGTCGGGT
426888 CGGGTCGGGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.16, C:0.18, G:0.47, T:0.18
Consensus pattern (13 bp):
CGGGTCGGGTAAA
Found at i:426849 original size:18 final size:18
Alignment explanation
Indices: 426826--426861 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
426816 CAACGGTCAA
426826 CGGGTCAACGGGTCGGGT
1 CGGGTCAACGGGTCGGGT
*
426844 CGGGTCAACTGGTCGGGT
1 CGGGTCAACGGGTCGGGT
426862 AAACGGGTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.22, G:0.47, T:0.19
Consensus pattern (18 bp):
CGGGTCAACGGGTCGGGT
Found at i:428998 original size:35 final size:35
Alignment explanation
Indices: 428925--428999 Score: 123
Period size: 35 Copynumber: 2.1 Consensus size: 35
428915 CGTCACTAAC
**
428925 AGTAAGGCCCTGAGCACACAGCCGAGGAACCGGTA
1 AGTAAGGCCCTGAGCACACAGCCGAGGAACCGCCA
*
428960 AGTAAGGCCCTGAGCACACAGCCGAGGAACCTCCA
1 AGTAAGGCCCTGAGCACACAGCCGAGGAACCGCCA
428995 AGTAA
1 AGTAA
429000 TCTTCCTCCA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.33, C:0.29, G:0.28, T:0.09
Consensus pattern (35 bp):
AGTAAGGCCCTGAGCACACAGCCGAGGAACCGCCA
Found at i:429103 original size:24 final size:24
Alignment explanation
Indices: 429076--429150 Score: 116
Period size: 24 Copynumber: 3.2 Consensus size: 24
429066 CATAATTCAA
*
429076 GTCAAGTATCATATCAGAATCCAG
1 GTCAAGTATCAGATCAGAATCCAG
* *
429100 GTCATGTATCAGATCAGAATCCAT
1 GTCAAGTATCAGATCAGAATCCAG
429124 GTCAA-TATCAGATCAGAATCCAG
1 GTCAAGTATCAGATCAGAATCCAG
429147 GTCA
1 GTCA
429151 GGATCATAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
23 21 0.46
24 25 0.54
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.25
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCCAG
Found at i:429156 original size:23 final size:23
Alignment explanation
Indices: 429080--429156 Score: 109
Period size: 23 Copynumber: 3.3 Consensus size: 23
429070 ATTCAAGTCA
*
429080 AGTATCATATCAGAATCCAGGTC
1 AGTATCAGATCAGAATCCAGGTC
*
429103 ATGTATCAGATCAGAATCCATGTC
1 A-GTATCAGATCAGAATCCAGGTC
*
429127 AATATCAGATCAGAATCCAGGTC
1 AGTATCAGATCAGAATCCAGGTC
*
429150 AGGATCA
1 AGTATCA
429157 TAATAGAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
23 26 0.55
24 21 0.45
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (23 bp):
AGTATCAGATCAGAATCCAGGTC
Found at i:429183 original size:47 final size:47
Alignment explanation
Indices: 429059--429172 Score: 124
Period size: 47 Copynumber: 2.4 Consensus size: 47
429049 ATATATAAAA
* * * * *
429059 ATCAAAACATAATTCAAGTCAAGTATCATATCAGAATCCAGGTCATGT
1 ATCAAATCAGAATCCAAGTCAA-TATCAGATCAGAATCCAGGTCATGG
* *
429107 ATCAGATCAGAATCCATGTCAATATCAGATCAGAATCCAGGTCA-GG
1 ATCAAATCAGAATCCAAGTCAATATCAGATCAGAATCCAGGTCATGG
*
429153 ATCATAAT-AGAATTCAAGTC
1 ATCA-AATCAGAATCCAAGTC
429173 GGAAATCAGA
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
46 15 0.27
47 23 0.42
48 17 0.31
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.25
Consensus pattern (47 bp):
ATCAAATCAGAATCCAAGTCAATATCAGATCAGAATCCAGGTCATGG
Found at i:430331 original size:18 final size:18
Alignment explanation
Indices: 430310--430345 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
430300 CTTCCATCCG
*
430310 ATCTTATTATTTAATTCA
1 ATCTTATCATTTAATTCA
*
430328 ATCTTATCATTTACTTCA
1 ATCTTATCATTTAATTCA
430346 GTCCTTTCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.53
Consensus pattern (18 bp):
ATCTTATCATTTAATTCA
Found at i:431651 original size:7 final size:7
Alignment explanation
Indices: 431639--431678 Score: 62
Period size: 7 Copynumber: 5.4 Consensus size: 7
431629 TGGTCAACTC
431639 CGGTCAA
1 CGGTCAA
431646 CGGTCAA
1 CGGTCAA
431653 CGGGTCAA
1 C-GGTCAA
431661 CGGTCAA
1 CGGTCAA
431668 CGGGTCAA
1 C-GGTCAA
431676 CGG
1 CGG
431679 GTCGGGTCGG
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
7 17 0.55
8 14 0.45
ACGTcount: A:0.25, C:0.28, G:0.35, T:0.12
Consensus pattern (7 bp):
CGGTCAA
Found at i:431660 original size:15 final size:15
Alignment explanation
Indices: 431640--431678 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
431630 GGTCAACTCC
431640 GGTCAACGGTCAACG
1 GGTCAACGGTCAACG
431655 GGTCAACGGTCAACG
1 GGTCAACGGTCAACG
431670 GGTCAACGG
1 GGTCAACGG
431679 GTCGGGTCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.36, T:0.13
Consensus pattern (15 bp):
GGTCAACGGTCAACG
Found at i:431686 original size:13 final size:13
Alignment explanation
Indices: 431681--431729 Score: 80
Period size: 13 Copynumber: 3.8 Consensus size: 13
431671 GTCAACGGGT
*
431681 CGGGTCGGGTCAA
1 CGGGTCGGGTAAA
*
431694 CTGGTCGGGTAAA
1 CGGGTCGGGTAAA
431707 CGGGTCGGGTAAA
1 CGGGTCGGGTAAA
431720 CGGGTCGGGT
1 CGGGTCGGGT
431730 CGGGTCGGGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.16, C:0.18, G:0.47, T:0.18
Consensus pattern (13 bp):
CGGGTCGGGTAAA
Found at i:431691 original size:18 final size:18
Alignment explanation
Indices: 431668--431703 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
431658 CAACGGTCAA
431668 CGGGTCAACGGGTCGGGT
1 CGGGTCAACGGGTCGGGT
*
431686 CGGGTCAACTGGTCGGGT
1 CGGGTCAACGGGTCGGGT
431704 AAACGGGTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.22, G:0.47, T:0.19
Consensus pattern (18 bp):
CGGGTCAACGGGTCGGGT
Found at i:431699 original size:8 final size:8
Alignment explanation
Indices: 431640--431681 Score: 70
Period size: 8 Copynumber: 5.5 Consensus size: 8
431630 GGTCAACTCC
431640 GGTCAAC-
1 GGTCAACG
431647 GGTCAACG
1 GGTCAACG
431655 GGTCAAC-
1 GGTCAACG
431662 GGTCAACG
1 GGTCAACG
431670 GGTCAACG
1 GGTCAACG
431678 GGTC
1 GGTC
431682 GGGTCGGGTC
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
7 14 0.42
8 19 0.58
ACGTcount: A:0.24, C:0.26, G:0.36, T:0.14
Consensus pattern (8 bp):
GGTCAACG
Found at i:434476 original size:22 final size:22
Alignment explanation
Indices: 434435--434501 Score: 116
Period size: 22 Copynumber: 3.0 Consensus size: 22
434425 CTCGTATAAA
434435 TGCACCGAAGTGCCCCGTAGAAT
1 TGCACCGAAGTG-CCCGTAGAAT
434458 TGCACCGAAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
*
434480 TGCACCGTAGTGCCCGTAGAAT
1 TGCACCGAAGTGCCCGTAGAAT
434502 GATGTCCATA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
22 31 0.72
23 12 0.28
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.19
Consensus pattern (22 bp):
TGCACCGAAGTGCCCGTAGAAT
Found at i:436214 original size:21 final size:21
Alignment explanation
Indices: 436190--436234 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
436180 TCTTGTTCGT
* *
436190 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
436211 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
436232 TTG
1 TTG
436235 CCCAAAATCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:439007 original size:22 final size:20
Alignment explanation
Indices: 438979--439021 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
438969 TCATGATGAG
438979 ATATGGAAGATAAAGATGGTTT
1 ATATGG-AGAT-AAGATGGTTT
*
439001 ATATGGATATAAGATGGTTT
1 ATATGGAGATAAGATGGTTT
439021 A
1 A
439022 AGTAATGGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 11 0.55
21 3 0.15
22 6 0.30
ACGTcount: A:0.40, C:0.00, G:0.26, T:0.35
Consensus pattern (20 bp):
ATATGGAGATAAGATGGTTT
Found at i:440731 original size:18 final size:18
Alignment explanation
Indices: 440708--440772 Score: 60
Period size: 18 Copynumber: 3.6 Consensus size: 18
440698 ATCAGTGGTC
440708 CTTCGGGACATAGTAGTT
1 CTTCGGGACATAGTAGTT
* * *
440726 CTTCGGAACAATCAGTTGTC
1 CTTCGGGAC-AT-AGTAGTT
*
440746 CTTC-GGACATAGTGGTT
1 CTTCGGGACATAGTAGTT
*
440763 ATTCGGGACA
1 CTTCGGGACA
440773 AATATTCAGT
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
17 8 0.22
18 15 0.41
19 5 0.14
20 9 0.24
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (18 bp):
CTTCGGGACATAGTAGTT
Found at i:440751 original size:20 final size:19
Alignment explanation
Indices: 440698--440752 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 19
440688 TCGAGGGATT
* *
440698 ATCAGTGGTCCTTCGGGAC
1 ATCAGTAGTCCTTCGGAAC
*
440717 AT-AGTAGTTCTTCGGAAC
1 ATCAGTAGTCCTTCGGAAC
*
440735 AATCAGTTGTCCTTCGGA
1 -ATCAGTAGTCCTTCGGA
440753 CATAGTGGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
18 13 0.45
19 4 0.14
20 12 0.41
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (19 bp):
ATCAGTAGTCCTTCGGAAC
Found at i:440768 original size:37 final size:38
Alignment explanation
Indices: 440698--440773 Score: 109
Period size: 37 Copynumber: 2.0 Consensus size: 38
440688 TCGAGGGATT
*
440698 ATCAGTGGTCCTTCGGGACATAGTAGTTCTTCGGAACA
1 ATCAGTGGTCCTTCGGGACATAGTAGTTATTCGGAACA
* * *
440736 ATCAGTTGTCCTTC-GGACATAGTGGTTATTCGGGACA
1 ATCAGTGGTCCTTCGGGACATAGTAGTTATTCGGAACA
440773 A
1 A
440774 ATATTCAGTG
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
37 21 0.62
38 13 0.38
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (38 bp):
ATCAGTGGTCCTTCGGGACATAGTAGTTATTCGGAACA
Found at i:441128 original size:4 final size:4
Alignment explanation
Indices: 441121--441159 Score: 69
Period size: 4 Copynumber: 9.5 Consensus size: 4
441111 TGATAATGAC
441121 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AGTGT AT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A-TGT AT
441160 TTGTTACATG
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 30 0.88
5 4 0.12
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.49
Consensus pattern (4 bp):
ATGT
Found at i:454470 original size:19 final size:20
Alignment explanation
Indices: 454429--454471 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
454419 AATATTTAAT
*
454429 GAGAAATAGTAGATTTTTAG
1 GAGAAATAGCAGATTTTTAG
*
454449 GAGAAATAGCATATTTTT-G
1 GAGAAATAGCAGATTTTTAG
454468 GAGA
1 GAGA
454472 TATTTTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.40, C:0.02, G:0.26, T:0.33
Consensus pattern (20 bp):
GAGAAATAGCAGATTTTTAG
Found at i:455290 original size:21 final size:21
Alignment explanation
Indices: 455264--455309 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
455254 ACAAGCTAAA
455264 TAAAGTACAGGTAAGTACAAC
1 TAAAGTACAGGTAAGTACAAC
*
455285 TAAAGTACAGGTAAGTACAAT
1 TAAAGTACAGGTAAGTACAAC
455306 TAAA
1 TAAA
455310 ACAGTTGTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.50, C:0.11, G:0.17, T:0.22
Consensus pattern (21 bp):
TAAAGTACAGGTAAGTACAAC
Found at i:461991 original size:399 final size:399
Alignment explanation
Indices: 461253--462053 Score: 1530
Period size: 399 Copynumber: 2.0 Consensus size: 399
461243 ATATCGTGTT
*
461253 CAAAATGATTTACGTGTGCATGTTCTTAGGAGGTTTCTCGAGGAGCTTATTGTTGGTTCATGTTC
1 CAAAATGATTTACGTGTGCATGTTCTTAGGAGGTTTCTCGAGGAGCTTATCGTTGGTTCATGTTC
461318 CAAATCCACCAAGGCATCAAAGTATGTTTTGAATCTATTTTAGAGGGCATATACTATTTATAGAC
66 CAAATCCACCAAGGCATCAAAGTATGTTTTGAATCTATTTTAGAGGGCATATACTATTTATAGAC
461383 CTTTGTGTGATCGAGTTGTAATTCTATTTTGATACAAATACTACGATATTATTTTGGAACATATT
131 CTTTGTGTGATCGAGTTGTAATTCTATTTTGATACAAATACTACGATATTATTTTGGAACATATT
* *
461448 CTGGAGCTCTCTACTTTTATAAACTTGGTTACTTACGGTTTCATATACGATTTAAATTGATGGTA
196 ATGGAGCTCTCAACTTTTATAAACTTGGTTACTTACGGTTTCATATACGATTTAAATTGATGGTA
461513 TTTTAATGATGATTACAATGTTATTTTAAAACAAAATTTTTGGGTTACCCACTTCAGTGGTTTCG
261 TTTTAATGATGATTACAATGTTATTTTAAAACAAAATTTTTGGGTTACCCACTTCAGTGGTTTCG
461578 TGAAATACTTTAATCCTTCAATTTTGGGTTGAATCAGATTAGGGTGTTACAATTTAAGCATATGA
326 TGAAATACTTTAATCCTTCAATTTTGGGTTGAATCAGATTAGGGTGTTACAATTTAAGCATATGA
461643 AAATTAATA
391 AAATTAATA
461652 CAAAATGATTTACGTGTGCATGTTCTTAGGAGGTTTCTCGAGGAGCTTATCGTTGGTTCATGTTC
1 CAAAATGATTTACGTGTGCATGTTCTTAGGAGGTTTCTCGAGGAGCTTATCGTTGGTTCATGTTC
*
461717 CAAATCCACCAAGGCATCAAAGTATGTTTTGAATCTATTTTAGAGGGCATGTACTATTTATAGAC
66 CAAATCCACCAAGGCATCAAAGTATGTTTTGAATCTATTTTAGAGGGCATATACTATTTATAGAC
* *
461782 CTTTGTGTGTTCGAGTTGTAATTCTATTTTGATACAAATACTATGATATTATTTTGGAACATATT
131 CTTTGTGTGATCGAGTTGTAATTCTATTTTGATACAAATACTACGATATTATTTTGGAACATATT
461847 ATGGAGCTCTCAACTTTTATAAACTTGGTTACTTACGGTTTCATATACGATTTAAATTGATGGTA
196 ATGGAGCTCTCAACTTTTATAAACTTGGTTACTTACGGTTTCATATACGATTTAAATTGATGGTA
*
461912 TTTTAATGATGATTACAATGTTATTTTAAAACAAAATTTTTGGGTTACCCACTTCAGTGGTTTTG
261 TTTTAATGATGATTACAATGTTATTTTAAAACAAAATTTTTGGGTTACCCACTTCAGTGGTTTCG
*
461977 TGAAATACTTTAATCCTTTAATTTTGGGTTGAATCAGATTAGGGTGTTACAATTTAAGCATATGA
326 TGAAATACTTTAATCCTTCAATTTTGGGTTGAATCAGATTAGGGTGTTACAATTTAAGCATATGA
462042 AAATTAATA
391 AAATTAATA
462051 CAA
1 CAA
462054 GCAAGATGAT
Statistics
Matches: 394, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
399 394 1.00
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.40
Consensus pattern (399 bp):
CAAAATGATTTACGTGTGCATGTTCTTAGGAGGTTTCTCGAGGAGCTTATCGTTGGTTCATGTTC
CAAATCCACCAAGGCATCAAAGTATGTTTTGAATCTATTTTAGAGGGCATATACTATTTATAGAC
CTTTGTGTGATCGAGTTGTAATTCTATTTTGATACAAATACTACGATATTATTTTGGAACATATT
ATGGAGCTCTCAACTTTTATAAACTTGGTTACTTACGGTTTCATATACGATTTAAATTGATGGTA
TTTTAATGATGATTACAATGTTATTTTAAAACAAAATTTTTGGGTTACCCACTTCAGTGGTTTCG
TGAAATACTTTAATCCTTCAATTTTGGGTTGAATCAGATTAGGGTGTTACAATTTAAGCATATGA
AAATTAATA
Found at i:466563 original size:55 final size:53
Alignment explanation
Indices: 466497--466602 Score: 151
Period size: 55 Copynumber: 2.0 Consensus size: 53
466487 GCGTTCAGAT
* * *
466497 GATTCATGAAGAATGACATCTGATGAATGAAGATATTT-AAACCTGACTGAAGAAC
1 GATTCATGAAGAAGGACATC-AATGAATGAAGAAATTTGAAA-CTGA-TGAAGAAC
466552 GATTCATGAAGAAGGACATCAATGAATGAAGAAATTTGAAACTGATGAAGA
1 GATTCATGAAGAAGGACATCAATGAATGAAGAAATTTGAAACTGATGAAGA
466603 CTGATCCACA
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
53 6 0.13
54 19 0.40
55 22 0.47
ACGTcount: A:0.44, C:0.10, G:0.22, T:0.24
Consensus pattern (53 bp):
GATTCATGAAGAAGGACATCAATGAATGAAGAAATTTGAAACTGATGAAGAAC
Found at i:467406 original size:71 final size:72
Alignment explanation
Indices: 467285--467422 Score: 242
Period size: 71 Copynumber: 1.9 Consensus size: 72
467275 CCTATTACAC
467285 AAGACTTCGGGTGAGAATCTGAATGTTAGTGGTGCAACCAATGTAATGATAGCAAATGATCAAGA
1 AAGACTTCGGGTGAGAATCTGAATGTTAGTGGTGCAACCAATGTAATGATAGCAAATGATCAAGA
467350 ACAGATG
66 ACAGATG
* * *
467357 AAGA-TTCGGGTGAGAATCTGAATGTTAGTGGTGCAGCCAATGTGATGATAGCAACTGATCAAGA
1 AAGACTTCGGGTGAGAATCTGAATGTTAGTGGTGCAACCAATGTAATGATAGCAAATGATCAAGA
467421 AC
66 AC
467423 CTGTTAGGGG
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
71 59 0.94
72 4 0.06
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.24
Consensus pattern (72 bp):
AAGACTTCGGGTGAGAATCTGAATGTTAGTGGTGCAACCAATGTAATGATAGCAAATGATCAAGA
ACAGATG
Found at i:471040 original size:125 final size:124
Alignment explanation
Indices: 470815--471045 Score: 309
Period size: 124 Copynumber: 1.9 Consensus size: 124
470805 TACCCACATT
* ** * * *
470815 GGGGCATGACTAAACCCACATCATGTTGAGATGACAAGATTTGGACTAAGGAGTCATGAAAATGA
1 GGGGCACGACTAAACCCACATCATGTTGAGATGACAAGATTCAGACCAAGAAGGCATGAAAATGA
* *
470880 GCCTTACAAATTGAGATGATGGGGCATTTTGAAGGCCCGTACCAGTATGAGATAATGTC
66 GCCTTACAAATTAAGATGATGGAGCATTTTGAAGGCCCGTACCAGTATGAGATAATGTC
* * *
470939 GGGGCACGACTGAACCCACATCATGTTGAGATGATAAGGTTCAGACCAAGAAGGCATTGAAAATG
1 GGGGCACGACTAAACCCACATCATGTTGAGATGACAAGATTCAGACCAAGAAGGCA-TGAAAATG
* * * * *
471004 AGCCTTATAATTTAAGGTGTTGGAGCATTTTGAAGGCTCGTA
65 AGCCTTACAAATTAAGATGATGGAGCATTTTGAAGGCCCGTA
471046 ACTGAATAAG
Statistics
Matches: 90, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
124 47 0.52
125 43 0.48
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (124 bp):
GGGGCACGACTAAACCCACATCATGTTGAGATGACAAGATTCAGACCAAGAAGGCATGAAAATGA
GCCTTACAAATTAAGATGATGGAGCATTTTGAAGGCCCGTACCAGTATGAGATAATGTC
Found at i:471058 original size:125 final size:124
Alignment explanation
Indices: 470815--471062 Score: 307
Period size: 125 Copynumber: 2.0 Consensus size: 124
470805 TACCCACATT
* ** * * *
470815 GGGGCATGACTAAACCCACATCATGTTGAGATGACAAGATTTGGACTAAGGAGTCATGAAAATGA
1 GGGGCACGACTAAACCCACATCATGTTGAGATGACAAGATTCAGACCAAGAAGGCATGAAAATGA
* * * * *
470880 GCCTTACAAATTGAGATGATGGGGCATTTTGAAGGCCCGTACCAGTATGAGATAATGTC
66 GCCTTACAAATTAAGATGATGGAGCATTTTGAAGGCCCGTAACAGAATAAGATAATGTC
* * *
470939 GGGGCACGACTGAACCCACATCATGTTGAGATGATAAGGTTCAGACCAAGAAGGCATTGAAAATG
1 GGGGCACGACTAAACCCACATCATGTTGAGATGACAAGATTCAGACCAAGAAGGCA-TGAAAATG
* * * * * *
471004 AGCCTTATAATTTAAGGTGTTGGAGCATTTTGAAGGCTCGTAACTGAATAAGATAATGT
65 AGCCTTACAAATTAAGATGATGGAGCATTTTGAAGGCCCGTAACAGAATAAGATAATGT
471063 TGCGGCATTA
Statistics
Matches: 103, Mismatches: 20, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
124 47 0.46
125 56 0.54
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.25
Consensus pattern (124 bp):
GGGGCACGACTAAACCCACATCATGTTGAGATGACAAGATTCAGACCAAGAAGGCATGAAAATGA
GCCTTACAAATTAAGATGATGGAGCATTTTGAAGGCCCGTAACAGAATAAGATAATGTC
Found at i:472349 original size:37 final size:36
Alignment explanation
Indices: 472265--472367 Score: 120
Period size: 37 Copynumber: 2.8 Consensus size: 36
472255 AAAGCCAAGT
*
472265 CTTCACCAAAGAGTAGTGAAGCAAACCATCTTAAGC
1 CTTCACCGAAGAGTAGTGAAGCAAACCATCTTAAGC
* *
472301 CTTCACCGAAGAGTAGTGAAGCATATA-CTTTTTAAGC
1 CTTCACCGAAGAGTAGTGAAGCA-A-ACCATCTTAAGC
* *
472338 CTTCTCGGAAGAGT-GTTGAAGCAAACCATC
1 CTTCACCGAAGAGTAG-TGAAGCAAACCATC
472368 AGACTATCAG
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
35 1 0.02
36 26 0.46
37 28 0.50
38 1 0.02
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.24
Consensus pattern (36 bp):
CTTCACCGAAGAGTAGTGAAGCAAACCATCTTAAGC
Found at i:472794 original size:51 final size:52
Alignment explanation
Indices: 472733--473044 Score: 257
Period size: 51 Copynumber: 5.9 Consensus size: 52
472723 GAATCAAACT
*
472733 CATTTTATGAAGA-TCGAGTCATATACTCTCTGAAGGAATAGGGAGCGAACA
1 CATTTTATGAAGATTCGAGTCCTATACTCTCTGAAGGAATAGGGAGCGAACA
* * *
472784 TATTTTATGAAGA-TCGAGTCCTATACTCTCTGAAGAAATAGGGAGCGGACA
1 CATTTTATGAAGATTCGAGTCCTATACTCTCTGAAGGAATAGGGAGCGAACA
* *
472835 CGTTTGT-TAAAGATT-GAGTCCTATACTCTCT--AGGAATAGGGAGCGAAC-
1 CATTT-TATGAAGATTCGAGTCCTATACTCTCTGAAGGAATAGGGAGCGAACA
* * * * *
472883 C-TGTTTATTGTAGATTTTCCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACC
1 CAT-TTTA-TGAAGA--TT-CGAGTCCTATACTCTCTGAAGGAATAGGGAGCGAACA
* * * * *
472939 CGTTTTATTGAAGATTGTTCAAGTCTTATACTCTCTGAATGAATAGAGAGC-AGACA
1 CATTTTA-TGAAGA---TTCGAGTCCTATACTCTCTGAAGGAATAGGGAGCGA-ACA
**
472995 CATTTTATGAAGATTGTTCGAGTTTTATACT-TCCTGAAGGAATAGGGAGC
1 CATTTTATGAAGA---TTCGAGTCCTATACTCT-CTGAAGGAATAGGGAGC
473045 AGGCTCGTCA
Statistics
Matches: 218, Mismatches: 27, Indels: 28
0.80 0.10 0.10
Matches are distributed among these distances:
47 2 0.01
48 3 0.01
49 19 0.09
51 73 0.33
52 2 0.01
53 15 0.07
54 1 0.00
55 52 0.24
56 47 0.22
57 4 0.02
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.31
Consensus pattern (52 bp):
CATTTTATGAAGATTCGAGTCCTATACTCTCTGAAGGAATAGGGAGCGAACA
Found at i:472922 original size:104 final size:101
Alignment explanation
Indices: 472742--472943 Score: 255
Period size: 104 Copynumber: 2.0 Consensus size: 101
472732 TCATTTTATG
472742 AAGATCGAGTCATATACTCTCTGAAGGAATAGGGAGCGAACATATTTTATGAAGATCGAGTCCTA
1 AAGATCGAGTCATATACTCTCT-AAGGAATAGGGAGCGAACATATTTTATGAAGATCGAGTCCTA
*
472807 TACTCTCTGAAGAAATAGGGAGCGGACACGTTTGTTA
65 TACTCTCTGAAGAAATAGAGAGCGGACACGTTTGTTA
* * * * *
472844 AAGATTGAGTCCTATACTCTCT-AGGAATAGGGAGCGAACCT-GTTTATTGTAGATTTTCCGAGT
1 AAGATCGAGTCATATACTCTCTAAGGAATAGGGAGCGAACATATTTTA-TGAAGA---T-CGAGT
* * *
472907 TCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTT
61 CCTATACTCTCTGAAGAAATAGAGAGCGGACACGTTT
472944 TATTGAAGAT
Statistics
Matches: 86, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
99 4 0.05
100 23 0.27
102 20 0.23
103 1 0.01
104 38 0.44
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (101 bp):
AAGATCGAGTCATATACTCTCTAAGGAATAGGGAGCGAACATATTTTATGAAGATCGAGTCCTAT
ACTCTCTGAAGAAATAGAGAGCGGACACGTTTGTTA
Found at i:473032 original size:55 final size:56
Alignment explanation
Indices: 472754--473046 Score: 217
Period size: 55 Copynumber: 5.5 Consensus size: 56
472744 GATCGAGTCA
* * **
472754 TATACTCTCTGAAGGAATAGGGAGC-GAACATATTTTA-TGAAGA----TCGAGTCC
1 TATACTCTCTGAAGGAATAGAGAGCAG-ACACATTTTATTGAAGATTGTTCGAGTTT
* * * * * * **
472805 TATACTCTCTGAAGAAATAGGGAGCGGACAC-GTTTGTTAAAGA---TT-GAGTCC
1 TATACTCTCTGAAGGAATAGAGAGCAGACACATTTTATTGAAGATTGTTCGAGTTT
* * * *
472856 TATACTCTCT--AGGAATAGGGAGC-GA-ACCTGTTTATTGTAGATT-TTCCGAGTTC
1 TATACTCTCTGAAGGAATAGAGAGCAGACACAT-TTTATTGAAGATTGTT-CGAGTTT
* * * * *
472909 TATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTTATTGAAGATTGTTCAAGTCT
1 TATACTCTCTGAAGGAATAGAGAGCAGACACATTTTATTGAAGATTGTTCGAGTTT
*
472965 TATACTCTCTGAATGAATAGAGAGCAGACACATTTTA-TGAAGATTGTTCGAGTTT
1 TATACTCTCTGAAGGAATAGAGAGCAGACACATTTTATTGAAGATTGTTCGAGTTT
*
473020 TATACT-TCCTGAAGGAATAGGGAGCAG
1 TATACTCT-CTGAAGGAATAGAGAGCAG
473047 GCTCGTCATT
Statistics
Matches: 201, Mismatches: 26, Indels: 26
0.79 0.10 0.10
Matches are distributed among these distances:
47 2 0.01
48 2 0.01
49 20 0.10
50 3 0.01
51 50 0.25
52 2 0.01
53 15 0.07
54 1 0.00
55 51 0.25
56 51 0.25
57 4 0.02
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (56 bp):
TATACTCTCTGAAGGAATAGAGAGCAGACACATTTTATTGAAGATTGTTCGAGTTT
Found at i:473032 original size:111 final size:104
Alignment explanation
Indices: 472742--473044 Score: 314
Period size: 111 Copynumber: 2.9 Consensus size: 104
472732 TCATTTTATG
* * *
472742 AAGATCGAGTCATATACTCTCTGAAGGAATAGGGAGCGAACATATTTTATGAAGA---TCGAGTC
1 AAGATTGAGTCATATACTCTCTGAAGGAATAGGGAGCG-ACACATTTTATGAAGATTTTCGAGTT
* *
472804 CTATACTCTCTGAAGAAATAGGGAGCGGACACGTTTGTTA
65 CTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTATTA
* * *
472844 AAGATTGAGTCCTATACTCTCT--AGGAATAGGGAGCGA-ACCTGTTTATTGTAGATTTTCCGAG
1 AAGATTGAGTCATATACTCTCTGAAGGAATAGGGAGCGACACAT-TTTA-TGAAGATTTT-CGAG
* * *
472906 TTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTTATTG
63 TTCTATACTCTCTGAAGGAATAGGGAGCGGACACG-TTTATTA
* * *
472949 AAGATTGTTCAAGTCTTATACTCTCTGAATGAATAGAGAGCAGACACATTTTATGAAGATTGTTC
1 AAGATTG----AGTCATATACTCTCTGAAGGAATAGGGAGC-GACACATTTTATGAAGATT-TTC
*
473014 GAGTTTTATACT-TCCTGAAGGAATAGGGAGC
60 GAGTTCTATACTCT-CTGAAGGAATAGGGAGC
473045 AGGCTCGTCA
Statistics
Matches: 166, Mismatches: 18, Indels: 25
0.79 0.09 0.12
Matches are distributed among these distances:
98 2 0.01
99 5 0.03
100 19 0.11
102 20 0.12
103 1 0.01
104 35 0.21
105 12 0.07
109 14 0.08
110 1 0.01
111 46 0.28
112 8 0.05
113 3 0.02
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (104 bp):
AAGATTGAGTCATATACTCTCTGAAGGAATAGGGAGCGACACATTTTATGAAGATTTTCGAGTTC
TATACTCTCTGAAGGAATAGGGAGCGGACACGTTTATTA
Found at i:483678 original size:17 final size:18
Alignment explanation
Indices: 483656--483690 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
483646 TGCGGAAGAT
*
483656 TTTTTTAATAAAA-AATA
1 TTTTTTAAGAAAATAATA
483673 TTTTTTAAGAAAATAATA
1 TTTTTTAAGAAAATAATA
483691 ATAATAATGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (18 bp):
TTTTTTAAGAAAATAATA
Found at i:499123 original size:363 final size:364
Alignment explanation
Indices: 498599--499621 Score: 1800
Period size: 363 Copynumber: 2.8 Consensus size: 364
498589 TGCGTTCACC
** * *
498599 TTTTGTCATTTATAGACCGGTTTTATCATATTTTTACATGTTATATTATTATGGATCGATACATT
1 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATT
*
498664 TTTATAAAGTATCGACACTTTATTAGCGCTATAACTTCTTCTCTTATT-AATTCCAAAAGTGTCG
66 TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTT-TTAAATTCCAAAAGTGTCG
**
498728 ATACTTATAATAAATTATCGACACTTTCAACATATTTGGTAGCGCTTTACCTGTTTTGTCATTTC
130 ATACTTATAATAAATTATCGACACTTTCAACATATCCGGTAGCGCTTTACCTGTTTTGTCATTTC
498793 GAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTAT
195 GAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTAT
*
498858 CGACACTTTATTGGCGCTATAAC-TCTTCTCTTTTAAATTCCAAAAGTGTCGATACGTATAATAA
260 CGACACTTTATTGACGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATACGTATAATAA
498922 ATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTA
325 ATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTA
* *
498962 TTTTGTCATTTCGAGATCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATT
1 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATT
*
499027 TTTATAAAGTATCGACATTTTATTGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGA
66 TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGA
* *
499092 TACTTATAATAAATTATCGACACTTTCAACATATCCGGTAGTGTTTTACCTGTTTTGTCATTTCG
131 TACTTATAATAAATTATCGACACTTTCAACATATCCGGTAGCGCTTTACCTGTTTTGTCATTTCG
* *
499157 AGACCGATTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAATATC
196 AGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATC
*
499222 GACACTTTATTGACGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATAATAAA
261 GACACTTTATTGACGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATACGTATAATAAA
* *
499287 TTATTGACACTTTCAACATAACCGGTAGCGCTTTACCTG
326 TTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTA
*
499326 TTTTGACATTTCGAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATT
1 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATT
499391 TTTATAAAGTATCGACACTTTATTGGCGCTATAAC-TCTTCTCTTTTAAATTCCAAAAGTGTCGA
66 TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGA
* *
499455 TACGTATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTGTTTTGTCATTTCG
131 TACTTATAATAAATTATCGACACTTTCAACATATCCGGTAGCGCTTTACCTGTTTTGTCATTTCG
*
499520 AGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATAGATCGATACATTTTTATAAAGTATC
196 AGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATC
**
499585 GACACTTTATTGACTATATAACTTCTTCTCTTTTAAA
261 GACACTTTATTGACGCTATAACTTCTTCTCTTTTAAA
499622 AAAGGTAAAA
Statistics
Matches: 627, Mismatches: 31, Indels: 4
0.95 0.05 0.01
Matches are distributed among these distances:
362 2 0.00
363 451 0.72
364 174 0.28
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.43
Consensus pattern (364 bp):
TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATT
TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGA
TACTTATAATAAATTATCGACACTTTCAACATATCCGGTAGCGCTTTACCTGTTTTGTCATTTCG
AGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATC
GACACTTTATTGACGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATACGTATAATAAA
TTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTA
Found at i:499158 original size:182 final size:182
Alignment explanation
Indices: 498599--499621 Score: 1773
Period size: 182 Copynumber: 5.6 Consensus size: 182
498589 TGCGTTCACC
** * * *
498599 TTTTGTCATTTATAGACCGGTTTTATCATATTTTTACATGTTATATTATTATGGATCGATACATT
1 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATT
*
498664 TTTATAAAGTATCGACACTTTATTAGCGCTATAACTTCTTCTCTTATT-AATTCCAAAAGTGTCG
66 TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTT-TTAAATTCCAAAAGTGTCG
***
498728 ATACTTATAATAAATTATCGACACTTTCAACATATTTGGTAGCGCTTTACCTG
130 ATACTTATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTG
498781 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATT
1 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATT
498846 TTTATAAAGTATCGACACTTTATTGGCGCTATAAC-TCTTCTCTTTTAAATTCCAAAAGTGTCGA
66 TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGA
* *
498910 TACGTATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTA
131 TACTTATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTG
*
498962 TTTTGTCATTTCGAGATCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATT
1 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATT
*
499027 TTTATAAAGTATCGACATTTTATTGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGA
66 TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGA
* * *
499092 TACTTATAATAAATTATCGACACTTTCAACATATCCGGTAGTGTTTTACCTG
131 TACTTATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTG
*
499144 TTTTGTCATTTCGAGACCGATTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATT
1 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATT
* *
499209 TTTATAAAATATCGACACTTTATTGACGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGA
66 TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGA
*
499274 TACTTATAATAAATTATTGACACTTTCAACATAACCGGTAGCGCTTTACCTG
131 TACTTATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTG
* *
499326 TTTTGACATTTCGAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATT
1 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATT
499391 TTTATAAAGTATCGACACTTTATTGGCGCTATAAC-TCTTCTCTTTTAAATTCCAAAAGTGTCGA
66 TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGA
*
499455 TACGTATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTG
131 TACTTATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTG
*
499507 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATAGATCGATACATT
1 TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATT
* **
499572 TTTATAAAGTATCGACACTTTATTGACTATATAACTTCTTCTCTTTTAAA
66 TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTTAAA
499622 AAAGGTAAAA
Statistics
Matches: 798, Mismatches: 40, Indels: 6
0.95 0.05 0.01
Matches are distributed among these distances:
180 2 0.00
181 344 0.43
182 452 0.57
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.43
Consensus pattern (182 bp):
TTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATT
TTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGA
TACTTATAATAAATTATCGACACTTTCAACATAACCGGTAGCGCTTTACCTG
Found at i:502004 original size:20 final size:19
Alignment explanation
Indices: 501958--502004 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
501948 TCCGGTATCA
*
501958 TTTTACCGTTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
501977 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
501998 TTTTACC
1 TTTTACC
502005 TGTTATATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.19, C:0.17, G:0.09, T:0.55
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:502302 original size:182 final size:181
Alignment explanation
Indices: 501925--502398 Score: 705
Period size: 182 Copynumber: 2.6 Consensus size: 181
501915 CGTACTTACG
* * * *
501925 AAAGTATCGACACTTTTAATATATCCGGTATCATTTTACCGTTTTTATCATTTTGATACCGGTTT
1 AAAGTATCGACACTTTAAATATATCCGGTACCGTTTTACCGGTTTTATCATTTTGATACCGGTTT
*
501990 TATCATATTTTTACCTGTTATATCGTTGTTTGATCGATACATTTTTTTAAAGTATCGACACTTTA
66 TATCATATTTTTACCTGTTATATCGTTG-TTGATCGATACATTTTTTGAAAGTATCGACACTTTA
* *
502055 TAGGCGCTAAAATTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATAT
130 TAGGCGCTAAAACTGCTTCTCTTTTAAATTAACAAAGTGTCGATCCTTATAT
* * * * *
502107 AAAGTTTCGACACTTTCAATATATCCGGTAGCGTTTTACCGGTTTCATCATTTTGATACCAGTTT
1 AAAGTATCGACACTTTAAATATATCCGGTACCGTTTTACCGGTTTTATCATTTTGATACCGGTTT
*
502172 TATCATATTTTTACCTGTTATATCGTTGTTGATCGATATATTTTTTGAAAGTATCGACACTTTAT
66 TATCATATTTTTACCTGTTATATCGTTGTTGATCGATACATTTTTTGAAAGTATCGACACTTTAT
* *
502237 AGGCGTTAAAACTGCTTCTCTTTTAAATTAACAAAGTGTCGATCTTTATATT
131 AGGCGCTAAAACTGCTTCTCTTTTAAATTAACAAAGTGTCGATCCTTATA-T
* * * ** *
502289 AAAGTACCGACACTTTAAATATATTCGGTACCGCTTTACCGGTTTTATCATTTCAATACTGGTTT
1 AAAGTATCGACACTTTAAATATATCCGGTACCGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* * * *
502354 TGTCATAGTTTTACCTGTTATATCGTTGTGGATCAATACATTTTT
66 TATCATATTTTTACCTGTTATATCGTTGTTGATCGATACATTTTT
502399 AATTTGGATC
Statistics
Matches: 262, Mismatches: 29, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
181 81 0.31
182 181 0.69
ACGTcount: A:0.27, C:0.16, G:0.13, T:0.44
Consensus pattern (181 bp):
AAAGTATCGACACTTTAAATATATCCGGTACCGTTTTACCGGTTTTATCATTTTGATACCGGTTT
TATCATATTTTTACCTGTTATATCGTTGTTGATCGATACATTTTTTGAAAGTATCGACACTTTAT
AGGCGCTAAAACTGCTTCTCTTTTAAATTAACAAAGTGTCGATCCTTATAT
Found at i:508046 original size:16 final size:17
Alignment explanation
Indices: 508021--508057 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
508011 ATGGGATGAA
508021 AAAAATTGT-ATTATTAT
1 AAAAATTGTAATTATT-T
508038 AAAAA-TGTAATTATTT
1 AAAAATTGTAATTATTT
508054 AAAA
1 AAAA
508058 TAATATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (17 bp):
AAAAATTGTAATTATTT
Found at i:508095 original size:16 final size:17
Alignment explanation
Indices: 508076--508107 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
508066 TACTACCATA
508076 ATATTAT-TTTTATATT
1 ATATTATATTTTATATT
508092 ATATTATATTTTATAT
1 ATATTATATTTTATAT
508108 AAATAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
ATATTATATTTTATATT
Found at i:508340 original size:20 final size:20
Alignment explanation
Indices: 508312--508360 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
508302 ATTTGGTAAA
* *
508312 ATATGCATCCAAGTAATTTT
1 ATATTCATCCAAGTAATCTT
508332 ATATTCATCCAAGTAATCTT
1 ATATTCATCCAAGTAATCTT
508352 ATATTCATC
1 ATATTCATC
508361 AAACCAAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.35, C:0.18, G:0.06, T:0.41
Consensus pattern (20 bp):
ATATTCATCCAAGTAATCTT
Found at i:508643 original size:13 final size:13
Alignment explanation
Indices: 508625--508649 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
508615 ATAAAATTTT
508625 TAAAAAATATATA
1 TAAAAAATATATA
508638 TAAAAAATATAT
1 TAAAAAATATAT
508650 GTTTTAGGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
TAAAAAATATATA
Found at i:509036 original size:15 final size:15
Alignment explanation
Indices: 508983--509028 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
508973 GAGAATTTAA
508983 AATATTTTAGAT-TTT
1 AATATTTTA-ATATTT
508998 AGAT-TTTTAATATTT
1 A-ATATTTTAATATTT
*
509013 AATATTTTACTATTT
1 AATATTTTAATATTT
509028 A
1 A
509029 TAATTTTATG
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 4 0.15
15 21 0.78
16 2 0.07
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (15 bp):
AATATTTTAATATTT
Found at i:510150 original size:12 final size:12
Alignment explanation
Indices: 510133--510158 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
510123 TTGAGGTTTA
510133 TTAATTATAATT
1 TTAATTATAATT
510145 TTAATTATAATT
1 TTAATTATAATT
510157 TT
1 TT
510159 TTTTGAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TTAATTATAATT
Found at i:511310 original size:64 final size:64
Alignment explanation
Indices: 511183--511302 Score: 186
Period size: 64 Copynumber: 1.9 Consensus size: 64
511173 TATATTATAC
*
511183 CATTTAACCGAAAATATTATCAAGCACAATAACATATTAGGTAGCGCTTATATAATAAAATAGG
1 CATTTAACCGAAAATATTATCAAGCACAATAACAAATTAGGTAGCGCTTATATAATAAAATAGG
* * * * *
511247 CATTTAACCGGAAATATTATTAAGTACAATAATAAATTATGTAGCGCTTATATAAT
1 CATTTAACCGAAAATATTATCAAGCACAATAACAAATTAGGTAGCGCTTATATAAT
511303 GTAATAGGTA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 50 1.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (64 bp):
CATTTAACCGAAAATATTATCAAGCACAATAACAAATTAGGTAGCGCTTATATAATAAAATAGG
Found at i:511801 original size:198 final size:196
Alignment explanation
Indices: 511341--511824 Score: 490
Period size: 198 Copynumber: 2.4 Consensus size: 196
511331 TTTCTCATTA
* *
511341 AACCGGTTACATTAT-AAATTGACCTATTACATTAT-GTATATCGG-T-TTTGATATTTTCGGGA
1 AACCGGTTACATT-TGAAATTTACCTATTACATTATAAT-TATCGGTTCTTTG--ATTTT-GGGA
* * *
511402 TCGATACAATTTT-AAATGTATCGACATTTTATGCGTGCAACTCGTTTGTGCTTTATTTTGGAAA
61 TCGATAC-TTTTTAAAATGTATCGACACTTTATGCGTACAACTCGTTTGTGCTTTATTTTGGAAA
* * * *
511466 AAAGTATCGACACATATTTAAAGAGTGTCGATACATAATGTAAACCTATTTGCTAATTAACCGGT
125 AAAGTATCGACACATAATTAAAAAATGTCGATACATAATGTAAACCTATTTGCTAATGAACCGGT
511531 ATATTTT
190 ATATTTT
* * * * * * *
511538 AACCAGTTACA-TTGTAAATTTATCTGTTACATAATAATTATC-GAT-TTCGATGTTTCGATGAT
1 AACCGGTTACATTTG-AAATTTACCTATTACATTATAATTATCGGTTCTTTGAT-TTT-G-GGAT
* *
511600 CGATACTTTTTACAAAGGTATCGACACTTTATGCGTACACCTCG-TT-TGCTATTCATTTTGGAA
62 CGATACTTTTTA-AAATGTATCGACACTTTATGCGTACAACTCGTTTGTGCT-TT-ATTTTGGAA
* * * ** *
511663 AAATGTATCGACACA-AATTAAAAAATGTCGATACTTTATGTTGACCTATTCT-CTCATGAACCC
124 AAAAGTATCGACACATAATTAAAAAATGTCGATACATAATGTAAACCTATT-TGCTAATGAA-CC
511726 GGTATATTTCT
187 GGTATATTT-T
511737 -ACCGGTTACATTTGAAATTTACCTATTACATTATAATTATCGGTCTCTTTGATTTTGGGATCGA
1 AACCGGTTACATTTGAAATTTACCTATTACATTATAATTATCGGT-TCTTTGATTTTGGGATCGA
*
511801 TACTTGTTATAAATGTATCGACAC
65 TACTTTTTA-AAATGTATCGACAC
511825 AAAATCTAAT
Statistics
Matches: 237, Mismatches: 33, Indels: 33
0.78 0.11 0.11
Matches are distributed among these distances:
195 3 0.01
196 15 0.06
197 81 0.34
198 123 0.52
199 6 0.03
200 4 0.02
201 5 0.02
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.39
Consensus pattern (196 bp):
AACCGGTTACATTTGAAATTTACCTATTACATTATAATTATCGGTTCTTTGATTTTGGGATCGAT
ACTTTTTAAAATGTATCGACACTTTATGCGTACAACTCGTTTGTGCTTTATTTTGGAAAAAAGTA
TCGACACATAATTAAAAAATGTCGATACATAATGTAAACCTATTTGCTAATGAACCGGTATATTT
T
Found at i:513170 original size:182 final size:182
Alignment explanation
Indices: 512642--513153 Score: 814
Period size: 182 Copynumber: 2.8 Consensus size: 182
512632 TCATGCATTG
512642 TTCTTCTCTTTTAAA-TATCAAAAGTGTCGATACTTATATTAATTTATCGACACTTTCAATATAT
1 TTCTTCTCTTTTAAATTA-CAAAAGTGTCGATACTTATATTAATTTATCGACACTTTCAATATAT
** * * * * *
512706 CCAGTAGCTTTTTACCGGTTTTATCAT-TTCAAGACCTGTTTTGTCATATTATTACCTATTATAT
65 CCAGTAGCAGTTTACCGGTTTTATCATAAT-GACACCGGTTTTGTCATATTATTACCTGTTATAT
* *
512770 TGCTATGGATCGATACATTTGTATAAAGTATAGACACTTTTTAAGCGCTATAAC
129 TGCTATGGATCGATACATTTGTATAAAGTATCGACACTTTATAAGCGCTATAAC
* *
512824 TTATTCTCTTTTAAATTACAAAAGTTTCGATACTTATATTAATTTATCGACACTTTCAATATATC
1 TTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTATCGACACTTTCAATATATC
*
512889 C-GATAGCAGTTTACCGGTTTTATCATAATGACACCGGTTTTGTCATATTATTATCTGTTATATT
66 CAG-TAGCAGTTTACCGGTTTTATCATAATGACACCGGTTTTGTCATATTATTACCTGTTATATT
* * *
512953 GCTATGGATCGATACATTTGTATAAAGCATCGACACTTTATAGGTGCTATAAC
130 GCTATGGATCGATACATTTGTATAAAGTATCGACACTTTATAAGCGCTATAAC
513006 TTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTATCGACACTTTCAATATATC
1 TTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTATCGACACTTTCAATATATC
* * *
513071 CAGTAGCGGTTTACCGGTTTTATCATAATGACACCGGTTTTATCATATTTTTACCTGTTATATTG
66 CAGTAGCAGTTTACCGGTTTTATCATAATGACACCGGTTTTGTCATATTATTACCTGTTATATTG
513136 CTATGGATCGATACATTT
131 CTATGGATCGATACATTT
513154 TTCATTTGTA
Statistics
Matches: 305, Mismatches: 21, Indels: 8
0.91 0.06 0.02
Matches are distributed among these distances:
181 1 0.00
182 300 0.98
183 4 0.01
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.42
Consensus pattern (182 bp):
TTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTATCGACACTTTCAATATATC
CAGTAGCAGTTTACCGGTTTTATCATAATGACACCGGTTTTGTCATATTATTACCTGTTATATTG
CTATGGATCGATACATTTGTATAAAGTATCGACACTTTATAAGCGCTATAAC
Found at i:513580 original size:56 final size:55
Alignment explanation
Indices: 513449--513643 Score: 196
Period size: 56 Copynumber: 3.5 Consensus size: 55
513439 AGGGCCCTCA
* * *
513449 AAAAATAGGGGCACCG-AATCGAATATATCTATTAGTTGTTGTCATTAATAAGTAT
1 AAAAATAGGGTC-CCGAAATCGAATATATCTATTAGTTGTTGCCATTAATAAGCAT
* *** *
513504 AAAATTAGGGGTTTTGAAATCGAATATATTTATTAGTTGTTGCCATTAATAAGCAT
1 AAAAATA-GGGTCCCGAAATCGAATATATCTATTAGTTGTTGCCATTAATAAGCAT
* * * * * * *
513560 AAAAATAGGGCCCCCAAAATCGAGTATATCT-TCAGTTGTTGCTATTAAGAATCAT
1 AAAAATAGGG-TCCCGAAATCGAATATATCTATTAGTTGTTGCCATTAATAAGCAT
*
513615 AAAAATATGGGTCCCGAAATCAAATATAT
1 AAAAATA-GGGTCCCGAAATCGAATATAT
513644 TTAGAAAATA
Statistics
Matches: 112, Mismatches: 24, Indels: 8
0.78 0.17 0.06
Matches are distributed among these distances:
55 51 0.46
56 61 0.54
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.32
Consensus pattern (55 bp):
AAAAATAGGGTCCCGAAATCGAATATATCTATTAGTTGTTGCCATTAATAAGCAT
Found at i:514166 original size:20 final size:21
Alignment explanation
Indices: 514121--514167 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
514111 AATTAAATAA
*
514121 ATATTATCTTACAATCATATT
1 ATATTATCTTACAATAATATT
514142 A-ATTAT-TTA-AATAATATAT
1 ATATTATCTTACAATAATAT-T
514161 ATATTAT
1 ATATTAT
514168 ATGAGAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
18 7 0.30
19 5 0.22
20 10 0.43
21 1 0.04
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (21 bp):
ATATTATCTTACAATAATATT
Found at i:517739 original size:28 final size:28
Alignment explanation
Indices: 517708--517788 Score: 144
Period size: 28 Copynumber: 2.9 Consensus size: 28
517698 CGCTTTTCCA
*
517708 AATACCGTATTTTTCATCAAATTCTCCT
1 AATACCATATTTTTCATCAAATTCTCCT
*
517736 AATACCATATTTTTCATTAAATTCTCCT
1 AATACCATATTTTTCATCAAATTCTCCT
517764 AATACCATATTTTTCATCAAATTCT
1 AATACCATATTTTTCATCAAATTCT
517789 GCCACCTCAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 50 1.00
ACGTcount: A:0.32, C:0.22, G:0.01, T:0.44
Consensus pattern (28 bp):
AATACCATATTTTTCATCAAATTCTCCT
Found at i:520190 original size:16 final size:17
Alignment explanation
Indices: 520171--520212 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
520161 AATTAAACTT
520171 TAATAAAATTTATA-T-A
1 TAATAAAATTT-TACTCA
*
520187 TAATAAAGTTTTACTCA
1 TAATAAAATTTTACTCA
520204 TAATAAAAT
1 TAATAAAAT
520213 CTGAACTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 2 0.09
16 11 0.50
17 9 0.41
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.40
Consensus pattern (17 bp):
TAATAAAATTTTACTCA
Found at i:525098 original size:224 final size:225
Alignment explanation
Indices: 524695--525144 Score: 893
Period size: 224 Copynumber: 2.0 Consensus size: 225
524685 ATCTTTAATA
524695 GATTATGTTCTCTTTTTCTTTCCAGCATTTAAAGTTGTTGATGGTCTTCTTGGCATATCCTTTAC
1 GATTATGTTCTCTTTTTCTTTCCAGCATTTAAAGTTGTTGATGGTCTTCTTGGCATATCCTTTAC
524760 ACTTCGTTTCTTTTTTCTTCGGAATCAGTTACGGTGTCTGACGGAGAAGGAACAGTTGGTGTTGC
66 ACTTCGTTTCTTTTTTCTTCGGAATCAGTTACGGTGTCTGACGGAGAAGGAACAGTTGGTGTTGC
524825 ACTTGGATAAGCAATACCCAGGCGACATAGGTGTTATATCAGCCTTTTTCTTCAATTACGTGAAA
131 ACTTGGATAAGCAATACCCAGGCGACATAGGTGTTATATCAGCCTTTTTCTTCAATTACGTGAAA
524890 CTTAATCCTGGTGAAGCATTGTATCTTGGG
196 CTTAATCCTGGTGAAGCATTGTATCTTGGG
524920 GATTATGTTCTC-TTTTCTTTCCAGCATTTAAAGTTGTTGATGGTCTTCTTGGCATATCCTTTAC
1 GATTATGTTCTCTTTTTCTTTCCAGCATTTAAAGTTGTTGATGGTCTTCTTGGCATATCCTTTAC
524984 ACTTCGTTTCTTTTTTCTTCGGAATCAGTTACGGTGTCTGACGGAGAAGGAACAGTTGGTGTTGC
66 ACTTCGTTTCTTTTTTCTTCGGAATCAGTTACGGTGTCTGACGGAGAAGGAACAGTTGGTGTTGC
525049 ACTTGGATAAGCAATACCCAGGCGACATAGGTGTTATATCAGCCTTTTTCTTCAATTACGTGAAA
131 ACTTGGATAAGCAATACCCAGGCGACATAGGTGTTATATCAGCCTTTTTCTTCAATTACGTGAAA
525114 CTTAATCCTGGTGAAGCATTGTATCTTGGG
196 CTTAATCCTGGTGAAGCATTGTATCTTGGG
525144 G
1 G
525145 CAAATGAACC
Statistics
Matches: 225, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
224 213 0.95
225 12 0.05
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.38
Consensus pattern (225 bp):
GATTATGTTCTCTTTTTCTTTCCAGCATTTAAAGTTGTTGATGGTCTTCTTGGCATATCCTTTAC
ACTTCGTTTCTTTTTTCTTCGGAATCAGTTACGGTGTCTGACGGAGAAGGAACAGTTGGTGTTGC
ACTTGGATAAGCAATACCCAGGCGACATAGGTGTTATATCAGCCTTTTTCTTCAATTACGTGAAA
CTTAATCCTGGTGAAGCATTGTATCTTGGG
Found at i:525906 original size:32 final size:30
Alignment explanation
Indices: 525825--525912 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 30
525815 TTTAATATCT
*
525825 GAACATATATACTTTCTTCTATCATGTTAA
1 GAACATATATGCTTTCTTCTATCATGTTAA
* *
525855 G-AC-T-TTTGGTTTTCTTCTATCATGTTAA
1 GAACATATAT-GCTTTCTTCTATCATGTTAA
525883 GTCAACATATATGCTTTCTTCTATCATGTT
1 G--AACATATATGCTTTCTTCTATCATGTT
525913 CTTATTTGAC
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
27 2 0.04
28 20 0.43
29 2 0.04
30 1 0.02
31 2 0.04
32 18 0.38
33 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.10, T:0.48
Consensus pattern (30 bp):
GAACATATATGCTTTCTTCTATCATGTTAA
Found at i:530628 original size:31 final size:29
Alignment explanation
Indices: 530561--530678 Score: 155
Period size: 29 Copynumber: 4.0 Consensus size: 29
530551 TAATTTATGA
*
530561 CCTCTTAGGCTCTATTTTGAACTCTCTCT
1 CCTCTTAGGCTCTATTTTCAACTCTCTCT
*
530590 CCTCTTAGGCTCTATTTCCAACTCTCTCT
1 CCTCTTAGGCTCTATTTTCAACTCTCTCT
* * *
530619 CCCCCCTTAGGCTCTATTTTGAACTCCCTCTT
1 --CCTCTTAGGCTCTATTTTCAACTCTCTC-T
*
530651 TCTCTTAGGCTCTATTTTCAACTCTCTC
1 CCTCTTAGGCTCTATTTTCAACTCTCTC
530679 AAACATACAC
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
29 27 0.36
30 24 0.32
31 24 0.32
32 1 0.01
ACGTcount: A:0.14, C:0.36, G:0.08, T:0.42
Consensus pattern (29 bp):
CCTCTTAGGCTCTATTTTCAACTCTCTCT
Found at i:530673 original size:61 final size:60
Alignment explanation
Indices: 530564--530678 Score: 194
Period size: 61 Copynumber: 1.9 Consensus size: 60
530554 TTTATGACCT
*
530564 CTTAGGCTCTATTTTGAACTCTCTCTCCTCTTAGGCTCTATTTCCAACTCTCTCTCCCCC
1 CTTAGGCTCTATTTTGAACTCCCTCTCCTCTTAGGCTCTATTTCCAACTCTCTCTCCCCC
* *
530624 CTTAGGCTCTATTTTGAACTCCCTCTTTCTCTTAGGCTCTATTTTCAACTCTCTC
1 CTTAGGCTCTATTTTGAACTCCCTC-TCCTCTTAGGCTCTATTTCCAACTCTCTC
530679 AAACATACAC
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
60 24 0.47
61 27 0.53
ACGTcount: A:0.14, C:0.35, G:0.09, T:0.43
Consensus pattern (60 bp):
CTTAGGCTCTATTTTGAACTCCCTCTCCTCTTAGGCTCTATTTCCAACTCTCTCTCCCCC
Found at i:538409 original size:20 final size:21
Alignment explanation
Indices: 538366--538414 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
538356 AACTAAAGTT
538366 TAAAATGTTATATAATGATCA
1 TAAAATGTTATATAATGATCA
* * *
538387 TAAAAT-TTATCTAATTATTA
1 TAAAATGTTATATAATGATCA
538407 T-AAATGTT
1 TAAAATGTT
538415 CATTGTACGT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 4 0.17
20 14 0.58
21 6 0.25
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.45
Consensus pattern (21 bp):
TAAAATGTTATATAATGATCA
Found at i:538513 original size:31 final size:31
Alignment explanation
Indices: 538443--538527 Score: 91
Period size: 31 Copynumber: 2.7 Consensus size: 31
538433 AGTAATAAAT
*
538443 TTTGATAAATTTAAA-GATTATTTTATAATAA
1 TTTGATAAA-TTAAATAATTATTTTATAATAA
** * *
538474 CCTAATAAATTAAATAACTATTTTATAATAA
1 TTTGATAAATTAAATAATTATTTTATAATAA
*
538505 TTTGATAAAATTTAATAATTATT
1 TTTGAT-AAATTAAATAATTATT
538528 GAAAAATTAT
Statistics
Matches: 42, Mismatches: 10, Indels: 3
0.76 0.18 0.05
Matches are distributed among these distances:
30 5 0.12
31 23 0.55
32 14 0.33
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.46
Consensus pattern (31 bp):
TTTGATAAATTAAATAATTATTTTATAATAA
Found at i:538535 original size:19 final size:20
Alignment explanation
Indices: 538506--538546 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
538496 TTATAATAAT
538506 TTGATAAAATT-TAATAATTA
1 TTGATAAAATTAT-ATAATTA
538526 TTGA-AAAATTATATAATTA
1 TTGATAAAATTATATAATTA
538545 TT
1 TT
538547 TTATAACTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (20 bp):
TTGATAAAATTATATAATTA
Done.