genome.fa.s9409.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009409.1 Hibiscus syriacus cultivar Beakdansim tig00113344_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23053

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2012--2057	2	23.0	2	100	0	92	50	0	0	50	1.00
3339--3695	179	2.0	178	85	3	477	22	24	19	32	1.97
4588--4641	21	2.6	21	90	0	90	22	25	29	22	1.99
10247--10328	23	3.7	23	80	9	80	23	30	23	23	1.99
14336--14387	20	2.6	20	96	0	95	38	26	13	21	1.90
14377--14475	21	4.8	20	72	6	72	36	23	19	21	1.95
14442--14635	20	9.6	20	81	5	221	35	25	19	19	1.95
14442--14635	60	3.2	60	83	0	253	35	25	19	19	1.95
15014--15083	32	2.2	33	92	2	115	11	24	17	47	1.80
15204--15257	14	3.6	14	72	18	54	38	22	27	11	1.88
15269--15366	19	5.7	19	70	22	81	10	24	22	42	1.84
15291--15380	14	5.7	14	74	23	81	8	25	23	42	1.83
15274--15388	33	3.5	33	95	0	212	9	24	20	45	1.81
15450--15535	45	1.9	45	100	0	172	22	4	16	56	1.58
17064--17436	92	4.1	93	95	4	690	21	12	19	46	1.83
17064--17436	180	2.0	184	95	4	686	21	12	19	46	1.83
17478--17575	19	5.4	20	75	17	90	44	28	17	9	1.79
17478--17604	18	7.3	19	72	20	107	44	29	17	8	1.78
17514--17604	33	2.8	32	88	8	132	45	28	18	7	1.77
17600--17732	19	7.6	19	76	17	128	10	19	23	46	1.81
17622--17678	14	3.7	14	77	20	60	10	21	22	45	1.82
17605--17732	33	3.8	33	87	6	168	10	18	23	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19502--19570	38	1.9	37	85	11	99	27	1	15	55	1.50
19552--19587	14	2.6	14	95	0	63	33	0	22	44	1.53
19694--19795	19	5.6	19	84	13	151	44	17	23	14	1.86
19802--20128	33	9.5	33	77	16	201	14	19	18	47	1.83
19824--20128	19	17.4	19	79	17	340	14	19	18	47	1.82
19802--20063	52	4.9	52	85	8	232	15	19	17	47	1.83
22593--22638	24	2.0	23	83	12	58	36	21	15	26	1.93

Tables:   1

The End!