genome.fa.s941.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000941.1 Hibiscus syriacus cultivar Beakdansim tig00001880_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75108

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1080--1179	42	2.4	42	84	3	121	50	17	11	22	1.77
4677--4725	18	2.7	18	80	3	62	40	6	4	48	1.47
6174--6211	2	19.0	2	100	0	76	50	0	0	50	1.00
8484--8510	2	13.5	2	100	0	54	51	0	0	48	1.00
14352--14383	2	16.0	2	100	0	64	50	0	0	50	1.00
16008--16041	17	2.0	17	88	0	50	32	2	8	55	1.45
17393--17465	35	2.1	35	100	0	146	34	8	34	23	1.84
20380--20459	31	2.6	31	97	0	151	35	10	18	36	1.85
26336--26426	20	4.9	20	68	20	72	34	5	15	45	1.69
26335--26482	53	2.8	52	95	3	271	33	5	13	47	1.65
26441--26480	20	2.0	20	95	0	71	37	5	12	45	1.64
31045--31135	20	4.9	20	68	20	72	34	5	15	45	1.69
31044--31191	53	2.8	52	95	3	271	33	5	13	47	1.65
31150--31189	20	2.0	20	95	0	71	37	5	12	45	1.64
34309--34375	3	23.0	3	74	17	52	40	0	0	59	0.97
34267--34375	13	8.0	15	74	18	80	40	0	0	58	1.04
34493--34529	13	2.8	13	91	0	56	18	45	8	27	1.77
36424--36574	51	3.0	51	89	1	223	14	31	30	23	1.94
38921--38946	2	13.0	2	100	0	52	50	0	0	50	1.00
39768--40030	42	6.3	41	85	9	306	35	28	18	17	1.94
39709--40004	62	4.8	61	73	13	223	37	26	19	16	1.93
39763--40081	104	3.1	102	89	6	423	36	26	18	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39708--40030	124	2.6	123	87	5	445	37	26	19	16	1.93
39789--40072	62	4.5	62	86	6	380	36	27	18	17	1.93
39706--40081	42	9.1	41	81	10	287	38	26	18	17	1.92
40177--40263	6	14.5	6	100	0	174	33	50	16	0	1.45
40752--40840	5	16.6	5	96	3	124	0	19	56	24	1.42
40940--41377	20	21.2	20	80	7	326	17	18	25	38	1.92
40940--41321	42	9.2	42	80	10	353	17	18	25	37	1.93
40940--41377	62	7.1	62	84	8	481	17	18	25	38	1.92
41013--41377	82	4.4	79	81	11	305	16	18	25	38	1.92
41586--41617	2	16.0	2	100	0	64	50	0	0	50	1.00
45625--45695	29	2.4	29	100	0	142	11	33	30	23	1.90
45739--45785	14	3.4	14	84	0	67	10	29	38	21	1.87
47349--47398	16	3.3	16	67	16	52	50	6	8	36	1.57
47336--47399	29	2.2	29	88	5	103	46	6	9	37	1.61
54337--54380	23	1.9	23	85	0	61	22	4	4	68	1.27
54335--54386	23	2.3	23	75	0	59	21	11	3	63	1.43
65238--65388	64	2.4	64	82	3	180	46	9	3	40	1.54
65240--65387	63	2.3	63	82	3	172	46	9	3	40	1.53
68969--69053	29	2.9	29	80	0	89	20	38	27	14	1.90
69198--69254	29	2.0	29	92	0	96	12	33	33	21	1.90
70529--70573	20	2.2	20	84	7	56	28	17	8	44	1.79
70611--70652	20	2.1	20	86	0	57	35	21	2	40	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70813--70935	60	2.0	60	85	3	167	34	9	15	40	1.80

Tables:   1

The End!