Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009413.1 Hibiscus syriacus cultivar Beakdansim tig00113360_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57630

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4390--4433
19
2.4
17
85
11
52
20
29
18
31
1.96
4390--4434
18
2.4
19
85
10
58
20
28
17
33
1.95
7861--7910
2
25.0
2
100
0
100
50
0
0
50
1.00
8872--8986
18
6.1
20
82
7
125
21
20
29
28
1.98
8875--8985
38
3.0
38
85
5
138
20
19
30
28
1.97
9353--9440
4
21.8
4
88
2
131
29
0
20
50
1.49
10109--10239
35
3.7
36
84
7
162
36
19
19
25
1.94
10109--10250
36
4.0
35
85
6
171
37
19
18
24
1.94
11936--11995
23
2.6
23
94
0
102
36
21
16
25
1.94
11983--12013
14
2.1
15
94
5
55
32
22
29
16
1.95
12007--12048
14
2.9
15
82
13
61
28
21
28
21
1.99
13053--13119
29
2.3
29
100
0
134
32
16
8
41
1.79
20654--20698
2
23.0
2
95
4
83
51
0
0
48
1.00
21932--22082
79
1.9
79
94
0
266
35
3
15
46
1.62
24150--24185
10
3.6
10
88
0
54
77
8
0
13
0.98
24912--25007
2
48.0
2
100
0
192
50
0
0
50
1.00
26767--27048
143
2.0
138
90
5
431
29
21
18
30
1.97
31631--31680
10
5.0
10
82
0
55
26
30
0
44
1.55
31717--31750
9
3.9
9
84
7
52
35
0
2
61
1.11
31716--31754
17
2.4
17
95
4
71
33
0
5
61
1.18
31717--31766
17
3.1
16
88
2
55
36
2
2
60
1.20
35194--35234
20
2.0
20
86
9
57
17
21
36
24
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35612--35643
13
2.4
14
85
15
50
50
0
12
37
1.41
35616--35644
13
2.3
13
94
5
51
51
0
10
37
1.36
35647--35697
21
2.4
21
90
0
84
17
45
0
37
1.49
35699--35726
14
2.0
14
100
0
56
50
7
7
35
1.57
37860--37934
23
3.4
22
83
5
98
21
28
28
22
1.99
37860--37934
22
3.4
22
85
5
98
21
28
28
22
1.99
38529--38595
22
3.0
22
100
0
134
26
26
26
19
1.99
38815--38874
30
2.0
31
90
3
95
33
23
6
36
1.81
38890--38959
29
2.4
29
92
0
113
38
12
10
38
1.77
39263--39413
68
2.2
67
85
3
196
16
27
27
28
1.97
39393--39435
21
2.0
21
86
0
59
16
25
27
30
1.97
45471--45537
22
3.0
22
100
0
134
26
26
26
19
1.99
45757--45816
30
2.0
31
90
3
95
33
23
6
36
1.81
45832--45901
29
2.4
29
92
0
113
38
12
10
38
1.77
46203--46353
68
2.3
66
86
4
196
16
27
27
27
1.97
46333--46375
21
2.0
21
86
0
59
16
25
27
30
1.97
49760--49811
27
1.9
27
96
0
95
23
23
23
30
1.99
50041--50083
20
2.2
20
86
0
59
34
20
13
30
1.92
54659--54713
27
2.0
27
96
0
101
23
23
23
29
1.99

Tables:   1

The End!