genome.fa.s9414.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009414.1 Hibiscus syriacus cultivar Beakdansim tig00113364_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104402

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8037--8075	15	2.5	15	87	4	51	25	35	25	12	1.92
15067--15096	15	2.0	15	100	0	60	33	6	20	40	1.78
18597--18634	7	5.4	7	96	0	67	26	26	28	18	1.98
18631--18688	5	10.8	5	78	14	62	6	22	51	18	1.70
18624--18688	22	3.0	22	100	0	130	9	23	49	18	1.76
18687--18782	19	5.1	19	78	14	90	28	28	26	17	1.98
18717--18782	10	6.9	9	78	11	60	28	25	27	18	1.98
18710--18782	29	2.6	27	82	12	53	27	27	27	17	1.98
25922--25952	7	4.4	7	95	0	53	25	25	29	19	1.99
25942--25984	22	2.0	22	100	0	86	9	23	48	18	1.76
25987--26050	19	3.3	19	83	12	69	28	29	26	15	1.96
26013--26071	20	2.9	21	83	14	79	30	23	27	18	1.98
43142--43168	2	13.5	2	100	0	54	48	0	0	51	1.00
45905--45957	14	3.6	14	76	14	61	54	26	13	5	1.60
47939--48022	29	2.9	28	83	1	87	23	17	17	40	1.91
47976--48032	29	2.0	29	85	0	78	26	21	14	38	1.91
52868--53180	147	2.1	148	89	2	486	36	22	15	25	1.94
54479--54521	21	2.0	21	81	0	50	13	25	30	30	1.94
66549--66607	24	2.5	24	97	0	109	25	16	37	20	1.93
73003--73034	17	1.9	17	93	6	57	40	18	12	28	1.87
74084--74122	13	2.9	14	84	7	53	28	17	28	25	1.98
76177--76619	218	2.0	218	99	0	879	41	6	15	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92772--92816	20	2.2	20	84	0	54	51	2	2	44	1.26
93328--93366	20	2.0	20	100	0	78	20	15	15	48	1.81
94916--95043	48	2.7	48	87	1	186	28	25	25	21	1.99
95921--95960	14	3.1	13	82	10	55	57	2	0	40	1.12
100164--100233	12	5.8	12	73	6	61	17	14	18	50	1.79
100165--100237	24	3.0	24	77	0	92	19	12	17	50	1.77

Tables:   1

The End!