Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009415.1 Hibiscus syriacus cultivar Beakdansim tig00113365_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 54987
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Found at i:1440 original size:28 final size:28
Alignment explanation
Indices: 1398--1454 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
1388 AATATCTGTT
*
1398 ACATTATGCCGTCGAGCTAGTACTTGAA
1 ACATTATGCCATCGAGCTAGTACTTGAA
* *
1426 ACATTATGTCATCGAGCTAGTGCTTGAA
1 ACATTATGCCATCGAGCTAGTACTTGAA
1454 A
1 A
1455 GCAACAGCGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (28 bp):
ACATTATGCCATCGAGCTAGTACTTGAA
Found at i:9942 original size:39 final size:39
Alignment explanation
Indices: 9877--9951 Score: 107
Period size: 39 Copynumber: 1.9 Consensus size: 39
9867 ACATAACAAT
* *
9877 GAACATGCAAACATCAAGGTAGAAATAGAAATGTCATAC
1 GAACATGCAAACATCAAGGCAAAAATAGAAATGTCATAC
*
9916 GAACATGCAAACATC-AGGACAAAAATAGAAGTGTCA
1 GAACATGCAAACATCAAGG-CAAAAATAGAAATGTCA
9952 CATAATACAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
38 3 0.09
39 29 0.91
ACGTcount: A:0.49, C:0.16, G:0.19, T:0.16
Consensus pattern (39 bp):
GAACATGCAAACATCAAGGCAAAAATAGAAATGTCATAC
Found at i:11108 original size:3 final size:3
Alignment explanation
Indices: 11100--11200 Score: 188
Period size: 3 Copynumber: 34.3 Consensus size: 3
11090 AATATATATA
11100 AAT AAT AAT AAT AAT AAT AAT AA- AAT AAT AAT -AT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
11146 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
11194 AAT AAT A
1 AAT AAT A
11201 TTTTTCGAGA
Statistics
Matches: 96, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
2 4 0.04
3 92 0.96
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:11585 original size:40 final size:39
Alignment explanation
Indices: 11538--11676 Score: 120
Period size: 40 Copynumber: 3.4 Consensus size: 39
11528 GTGACACAGC
*
11538 TCCTACGTGATGAAGAGGTCTGGTCGGTGGATGGCATAGT
1 TCCTACGTGATGAAGAGGTCTGGTCGGTGGATGACAT-GT
* * * * *
11578 TCCTACGTGATGAGGACGACTGGTTATCTAGG-GG-TGACACGGC
1 TCCTACGTGATGAAGAGGTCTGG---TC--GGTGGATGACA-TGT
*
11621 TCCTACGTGATGAGGAGGTCTGGTCGGTGGATGACATGAT
1 TCCTACGTGATGAAGAGGTCTGGTCGGTGGATGACATG-T
*
11661 TCCTACATGATGAAGA
1 TCCTACGTGATGAAGA
11677 CGACATGTCA
Statistics
Matches: 78, Mismatches: 12, Indels: 18
0.72 0.11 0.17
Matches are distributed among these distances:
38 2 0.03
39 3 0.04
40 41 0.53
43 28 0.36
44 2 0.03
45 2 0.03
ACGTcount: A:0.22, C:0.17, G:0.35, T:0.26
Consensus pattern (39 bp):
TCCTACGTGATGAAGAGGTCTGGTCGGTGGATGACATGT
Found at i:11594 original size:83 final size:82
Alignment explanation
Indices: 11493--11673 Score: 272
Period size: 83 Copynumber: 2.2 Consensus size: 82
11483 TGATAACACG
*
11493 GTTCCTATGTGATGAGGACAACTAATTATCTAGGGGTGACACAGCTCCTACGTGATGAAGAGGTC
1 GTTCCTACGTGATGAGGACAACTAATTATCTAGGGGTGACACAGCTCCTACGTGATGAAGAGGTC
*
11558 TGGTCGGTGGATGGCAT
66 TGGTCGGTGGATGACAT
* ** * *
11575 AGTTCCTACGTGATGAGGACGACTGGTTATCTAGGGGTGACACGGCTCCTACGTGATGAGGAGGT
1 -GTTCCTACGTGATGAGGACAACTAATTATCTAGGGGTGACACAGCTCCTACGTGATGAAGAGGT
11640 CTGGTCGGTGGATGACAT
65 CTGGTCGGTGGATGACAT
*
11658 GATTCCTACATGATGA
1 G-TTCCTACGTGATGA
11674 AGACGACATG
Statistics
Matches: 89, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
82 1 0.01
83 88 0.99
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.27
Consensus pattern (82 bp):
GTTCCTACGTGATGAGGACAACTAATTATCTAGGGGTGACACAGCTCCTACGTGATGAAGAGGTC
TGGTCGGTGGATGACAT
Found at i:11630 original size:43 final size:44
Alignment explanation
Indices: 11488--11779 Score: 171
Period size: 43 Copynumber: 6.8 Consensus size: 44
11478 TAGGATGATA
* * **
11488 ACACGGTTCCTATGTGATGAGGACAACTAATTATCTAGG-GGTG
1 ACACGGTTCCTACGTGATGAGGACGACTGGTTATCTAGGTGGTG
* * * * *
11531 ACACAGCTCCTACGTGATGAAGAGGTCTGG---TC--GGTGGATG
1 ACACGGTTCCTACGTGATGAGGACGACTGGTTATCTAGGTGG-TG
* **
11571 GCATAGTTCCTACGTGATGAGGACGACTGGTTATCTAGG-GGTG
1 ACACGGTTCCTACGTGATGAGGACGACTGGTTATCTAGGTGGTG
* * *
11614 ACACGGCTCCTACGTGATGAGGAGGTCTGG---TC--GGTGGATG
1 ACACGGTTCCTACGTGATGAGGACGACTGGTTATCTAGGTGG-TG
* * * * * * *
11654 ACATGATTCCTACATGATGAAGACGACAT-GTCATCTTTAGGATGATA
1 ACACGGTTCCTACGTGATGAGGACGAC-TGGTTATC--TAGG-TGGTG
** * *
11701 ACACATTTCCTACTTGATGAGGACGGCTGGTTATCTAGG-GGTG
1 ACACGGTTCCTACGTGATGAGGACGACTGGTTATCTAGGTGGTG
* * *
11744 ACACGGCTCCTACGTGATGAGGAGGTCTGGTTATCT
1 ACACGGTTCCTACGTGATGAGGACGACTGGTTATCT
11780 TTAGGGATAA
Statistics
Matches: 185, Mismatches: 45, Indels: 38
0.69 0.17 0.14
Matches are distributed among these distances:
38 4 0.02
39 4 0.02
40 53 0.29
41 1 0.01
43 83 0.45
44 2 0.01
45 6 0.03
46 1 0.01
47 29 0.16
48 2 0.01
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (44 bp):
ACACGGTTCCTACGTGATGAGGACGACTGGTTATCTAGGTGGTG
Found at i:11904 original size:66 final size:65
Alignment explanation
Indices: 11800--11945 Score: 206
Period size: 66 Copynumber: 2.2 Consensus size: 65
11790 TATTTTAAGA
*
11800 GAAACAGA-CTCAAAGATGATGCTTCAAGAGAAGCTGTCTCAAGAGAGACAAAA-TTCGTTTAAA
1 GAAAC-GATCTCAAAGATGATGCTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT-GTTTAAA
11863 AG
64 AG
* * *
11865 GAAACGATCTCAAAGATGAGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAACTTGTTTAAAG
1 GAAACGATCTCAAAGATGA-TGCTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTGTTTAAAA
11930 G
65 G
*
11931 GAAACAATCTCAAAG
1 GAAACGATCTCAAAG
11946 GTTAGCAATT
Statistics
Matches: 73, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
64 2 0.03
65 16 0.22
66 53 0.73
67 2 0.03
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.21
Consensus pattern (65 bp):
GAAACGATCTCAAAGATGATGCTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTGTTTAAAAG
Found at i:12047 original size:36 final size:35
Alignment explanation
Indices: 12001--12128 Score: 143
Period size: 36 Copynumber: 3.6 Consensus size: 35
11991 TAAAGAAGAA
*
12001 AAAAATGTCTTAAGCGAGACAAAATTTGTTTTGT-G
1 AAAATTGTCTTAAGCGAGACAAAATTTGTTTT-TAG
*
12036 AGAAATTGTCTTAAGCAAGACAAAATTTGTTTTTAG
1 A-AAATTGTCTTAAGCGAGACAAAATTTGTTTTTAG
* * * *
12072 AAAACTGTCTCAAGCGAGACAAACTTTTATTTTTTAG
1 AAAATTGTCTTAAGCGAGACAAA-ATTT-GTTTTTAG
12109 AAAATTGTCTCT-AGCGAGAC
1 AAAATTGTCT-TAAGCGAGAC
12129 GACACTTTGT
Statistics
Matches: 79, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
35 21 0.27
36 34 0.43
37 24 0.30
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34
Consensus pattern (35 bp):
AAAATTGTCTTAAGCGAGACAAAATTTGTTTTTAG
Found at i:13465 original size:2 final size:2
Alignment explanation
Indices: 13460--13518 Score: 118
Period size: 2 Copynumber: 29.5 Consensus size: 2
13450 ATTGTGTGTG
13460 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13502 TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA T
13519 TTGGGTATAC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 57 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:17588 original size:4 final size:4
Alignment explanation
Indices: 17579--17816 Score: 476
Period size: 4 Copynumber: 59.5 Consensus size: 4
17569 CATAATTTAT
17579 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
17627 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
17675 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
17723 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
17771 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
17817 GAAATTATAA
Statistics
Matches: 234, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 234 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:19430 original size:3 final size:3
Alignment explanation
Indices: 19417--19460 Score: 70
Period size: 3 Copynumber: 14.3 Consensus size: 3
19407 AAAATATATG
*
19417 TAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA CAA TAA TAA T
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
19461 TTTTTTCGAG
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:21340 original size:31 final size:31
Alignment explanation
Indices: 21300--21365 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
21290 TTAAAAATAT
* * *
21300 GTGTTTAACATTTTATATGTTATATTTTTAG
1 GTGTCTAACATTTTATATGTTACACTTTTAG
* *
21331 GTGTCTAACATTTTTTCTGTTACACTTTTAG
1 GTGTCTAACATTTTATATGTTACACTTTTAG
21362 GTGT
1 GTGT
21366 ATGTGTAATA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.21, C:0.09, G:0.15, T:0.55
Consensus pattern (31 bp):
GTGTCTAACATTTTATATGTTACACTTTTAG
Found at i:22874 original size:100 final size:102
Alignment explanation
Indices: 22763--22974 Score: 365
Period size: 100 Copynumber: 2.1 Consensus size: 102
22753 GATTTAATGA
* ***
22763 CAAATTAAAATATATGACTGTTTAGAAAATGATAGACTTAATAAATTTAATTTTT-TTTAA-AAT
1 CAAATTGAAATATATGACTGTTTAGAAAATGATAGACTTAATAAATTTAATTTTTAAAAAATAAT
*
22826 TTAAAATAAATATATTTTAATTTATTAAAACTAGGAT
66 TTAAAATAAATATATTTTAATTAATTAAAACTAGGAT
22863 CAAATTGAAATATATGACTGTTTAGAAAATGATAGACTTAATAAATTTAATTTTTAAAAAATAAT
1 CAAATTGAAATATATGACTGTTTAGAAAATGATAGACTTAATAAATTTAATTTTTAAAAAATAAT
22928 TTAAAATAAATATATTTTAATTAATTAAAACTAGGAT
66 TTAAAATAAATATATTTTAATTAATTAAAACTAGGAT
22965 CAAATTGAAA
1 CAAATTGAAA
22975 GAATGTATAA
Statistics
Matches: 105, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
100 54 0.51
101 2 0.02
102 49 0.47
ACGTcount: A:0.49, C:0.04, G:0.08, T:0.39
Consensus pattern (102 bp):
CAAATTGAAATATATGACTGTTTAGAAAATGATAGACTTAATAAATTTAATTTTTAAAAAATAAT
TTAAAATAAATATATTTTAATTAATTAAAACTAGGAT
Found at i:24934 original size:7 final size:7
Alignment explanation
Indices: 24922--24946 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
24912 GAAGAGTTAG
24922 GCGGTCA
1 GCGGTCA
24929 GCGGTCA
1 GCGGTCA
24936 GCGGTCA
1 GCGGTCA
24943 GCGG
1 GCGG
24947 CCAGTGAGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.28, G:0.48, T:0.12
Consensus pattern (7 bp):
GCGGTCA
Found at i:28546 original size:21 final size:21
Alignment explanation
Indices: 28521--28568 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
28511 CCTAATATTG
28521 CAATGTCAAAATTAGGTGCAA
1 CAATGTCAAAATTAGGTGCAA
*
28542 CAATGTCAAAATTAGGTGTAA
1 CAATGTCAAAATTAGGTGCAA
*
28563 TAATGT
1 CAATGT
28569 TTGAAAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.42, C:0.10, G:0.19, T:0.29
Consensus pattern (21 bp):
CAATGTCAAAATTAGGTGCAA
Found at i:32926 original size:21 final size:21
Alignment explanation
Indices: 32901--32948 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
32891 CCTAATATTG
32901 CAATGTCAAAATTAGGTGCAA
1 CAATGTCAAAATTAGGTGCAA
*
32922 CAATGTCAAAATTAGGTTCAA
1 CAATGTCAAAATTAGGTGCAA
*
32943 TAATGT
1 CAATGT
32949 TTGAAAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
CAATGTCAAAATTAGGTGCAA
Found at i:41195 original size:18 final size:17
Alignment explanation
Indices: 41155--41196 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
41145 TTATCGGTAT
*
41155 TTATATGAATTTTCTTA
1 TTATATGTATTTTCTTA
*
41172 TT-TATGTATTTTTTTA
1 TTATATGTATTTTCTTA
41188 TGTATATGT
1 T-TATATGT
41197 TTTATTTGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 13 0.62
17 3 0.14
18 5 0.24
ACGTcount: A:0.24, C:0.02, G:0.10, T:0.64
Consensus pattern (17 bp):
TTATATGTATTTTCTTA
Found at i:41854 original size:47 final size:46
Alignment explanation
Indices: 41796--41902 Score: 121
Period size: 47 Copynumber: 2.3 Consensus size: 46
41786 ACTTTAATAC
* *
41796 ATACATATCATATATACATGA-GACATGCATTAACAAATTATACATAT
1 ATACATATCATATATACATGATG-CATACATTAACAAATTATAAAT-T
* * * *
41843 ATACATATCATACATATATGATGCATATATTAATAAATTATAAATT
1 ATACATATCATATATACATGATGCATACATTAACAAATTATAAATT
41889 ATA-ATAT-ATATATA
1 ATACATATCATATATA
41903 TATATATATA
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
44 6 0.12
45 4 0.08
46 4 0.08
47 37 0.71
48 1 0.02
ACGTcount: A:0.49, C:0.10, G:0.05, T:0.36
Consensus pattern (46 bp):
ATACATATCATATATACATGATGCATACATTAACAAATTATAAATT
Found at i:41899 original size:2 final size:2
Alignment explanation
Indices: 41888--41933 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
41878 AATTATAAAT
41888 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
41929 TA TA T
1 TA TA T
41934 CCATGCATTA
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:41960 original size:4 final size:4
Alignment explanation
Indices: 41951--46170 Score: 7979
Period size: 4 Copynumber: 1065.5 Consensus size: 4
41941 TTAATAAATT
* * ** ** * *
41951 ATAC ATAC ATATC ATAC ACAC ATAC ATAC ATGC ATGT ATTG ATAA AT-T
1 ATAC ATAC ATA-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
41999 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42045 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42093 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42141 ATAC ATAC ATAC ATAC AT-C ATAC ATAC ATAC -TAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42187 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42235 ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42282 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42330 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42378 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42426 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42474 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42522 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42570 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42618 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
42666 ATAC ATAC ATAC ACAT ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42713 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42761 ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42808 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42855 ATAC ATAC ATA- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42902 ATAC ATAC --AC ATAC ATAC A-AC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
42947 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ACAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
42995 ATAC ATAC ATAC AT-- ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43039 ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43085 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43133 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43181 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43229 ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
43276 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC CTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43324 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43372 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43420 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43468 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43516 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43562 ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43609 ATAC ATAC ATAC AT-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43656 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43704 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
43752 ATAC ATAC AT-C -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ACATC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-C
43799 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43846 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43894 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43942 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43990 ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
44036 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
44084 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
44132 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
44180 ATAC ATAC CTAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
44228 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
44276 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
44324 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
44372 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
44420 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC CTAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
44468 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
44516 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
44562 ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC AT-- ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
44606 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
44654 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
44701 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
44749 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
44797 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
44845 ATAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
44891 ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
44938 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
44986 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
45034 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
45082 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
45130 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
45178 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
45226 ATAC ATAC ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
45272 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
45319 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
45367 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
45415 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
45463 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
45511 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
45559 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
45607 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
45655 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
45703 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
45751 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
45799 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
45847 ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
45893 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
45941 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
45989 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
46037 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
46085 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
46133 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
46171 GCATGCATTA
Statistics
Matches: 4146, Mismatches: 24, Indels: 92
0.97 0.01 0.02
Matches are distributed among these distances:
2 27 0.01
3 49 0.01
4 4063 0.98
5 7 0.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:50407 original size:28 final size:28
Alignment explanation
Indices: 50375--50430 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
50365 AAGGGGGATC
50375 TTAGAGGTGTTCCAAAAAGTTCAAGTTA
1 TTAGAGGTGTTCCAAAAAGTTCAAGTTA
50403 TTAGAGGTGTTCCAAAAAGTTCAAGTTA
1 TTAGAGGTGTTCCAAAAAGTTCAAGTTA
50431 ACATACCTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (28 bp):
TTAGAGGTGTTCCAAAAAGTTCAAGTTA
Found at i:50863 original size:17 final size:16
Alignment explanation
Indices: 50841--50874 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
50831 TAAAAACAGT
50841 AAATAAAAAGATAAATA
1 AAATAAAAAGA-AAATA
*
50858 AAATAAGAAGAAAATA
1 AAATAAAAAGAAAATA
50874 A
1 A
50875 TCCTCACGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (16 bp):
AAATAAAAAGAAAATA
Found at i:51393 original size:24 final size:24
Alignment explanation
Indices: 51349--51395 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
51339 ATAAAGAACC
*
51349 AAAATAAACTTAAATATACCATTA
1 AAAATAAACTTAAACATACCATTA
*
51373 AAAATAAAGTTTAAACA-ACCATT
1 AAAATAAA-CTTAAACATACCATT
51396 CAACCAACCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.57, C:0.13, G:0.02, T:0.28
Consensus pattern (24 bp):
AAAATAAACTTAAACATACCATTA
Found at i:54739 original size:18 final size:19
Alignment explanation
Indices: 54694--54740 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
54684 AAGAAAGAGA
*
54694 AAAGGTAAAAGTTAAAATG
1 AAAGATAAAAGTTAAAATG
* *
54713 -AAGAGAAAA-TTAATATG
1 AAAGATAAAAGTTAAAATG
54730 AAAGATAAAAG
1 AAAGATAAAAG
54741 AAAAATTAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 4
0.73 0.13 0.13
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.62, C:0.00, G:0.19, T:0.19
Consensus pattern (19 bp):
AAAGATAAAAGTTAAAATG
Done.