Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009416.1 Hibiscus syriacus cultivar Beakdansim tig00113368_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51085

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1918--1976
23
2.6
22
78
5
55
42
10
16
30
1.82
3630--3688
31
1.9
31
89
0
91
33
10
10
45
1.72
3903--3958
28
1.9
29
89
7
87
44
0
10
44
1.38
4026--4100
29
2.5
30
78
8
80
49
5
5
40
1.48
4031--4089
29
2.1
28
87
3
82
49
6
5
38
1.52
4464--4630
60
3.0
54
75
16
178
47
11
11
28
1.76
4627--4741
31
3.6
30
66
23
74
49
13
11
26
1.75
4574--4759
65
2.8
65
90
4
277
46
13
12
26
1.79
6676--6739
24
2.7
24
85
0
83
20
3
20
56
1.56
13573--13681
35
3.0
36
84
10
141
31
5
17
45
1.71
18141--18214
37
2.0
37
92
5
123
29
5
21
43
1.75
20783--20837
12
4.6
12
83
0
74
12
16
47
23
1.81
20836--20916
31
2.6
31
84
1
110
49
0
0
50
1.00
20934--20976
12
3.5
13
90
6
63
13
16
51
18
1.77
21377--21419
18
2.4
17
84
7
59
74
0
2
23
0.93
21386--21419
12
3.1
11
88
12
52
73
0
2
23
0.97
21450--21884
38
11.8
38
82
10
514
44
5
3
45
1.44
21419--21914
75
6.7
73
79
12
400
45
5
3
45
1.43
21450--21872
36
11.5
36
83
8
439
44
5
3
46
1.44
23267--23305
16
2.6
15
88
8
53
51
2
2
43
1.29
24739--24795
9
6.6
9
77
16
50
8
8
1
80
0.97
35192--35294
52
1.9
54
86
3
147
51
13
21
13
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36060--36940
105
8.4
105
95
0
1496
33
25
18
22
1.97
37402--37440
16
2.6
15
88
8
53
51
2
2
43
1.29
38861--38901
16
2.5
16
84
4
55
7
9
2
80
0.99
41025--41067
18
2.3
19
88
4
61
74
6
4
13
1.19
41139--41171
9
3.7
9
84
15
50
72
9
6
12
1.26
41138--41180
18
2.3
19
96
4
79
74
9
4
11
1.20
41011--41261
112
2.3
111
88
4
371
50
7
5
36
1.54
45077--45146
20
3.5
20
69
7
61
34
17
18
30
1.94
46313--46369
27
2.1
28
86
3
80
42
0
8
49
1.34

Tables:   1

The End!