genome.fa.s9417.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009417.1 Hibiscus syriacus cultivar Beakdansim tig00113371_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74897

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
760--817	29	2.0	29	96	0	107	62	15	5	17	1.50
2592--2623	2	16.5	2	93	6	57	50	0	0	50	1.00
3613--3733	64	1.9	63	86	5	172	37	19	18	25	1.94
4415--4476	23	2.7	23	94	0	97	19	25	27	27	1.99
11322--11382	23	2.7	23	84	0	86	21	27	24	26	1.99
12569--12640	31	2.3	31	80	0	81	41	13	23	20	1.88
12733--12782	24	2.1	24	100	0	100	34	22	12	32	1.90
12737--12789	24	2.2	24	93	0	88	35	18	15	30	1.92
17515--17548	15	2.3	15	95	5	61	58	0	0	41	0.98
21289--21339	26	1.9	27	88	4	77	54	0	5	39	1.24
21548--21583	19	1.9	19	88	5	56	38	0	8	52	1.32
21834--21892	6	8.6	7	90	9	63	47	0	0	52	1.00
21839--21891	2	27.0	2	96	3	99	49	0	0	50	1.00
25867--25895	3	9.7	3	100	0	58	68	0	0	31	0.89
27212--27247	19	1.9	18	88	5	54	41	0	0	58	0.98
27274--27320	22	2.1	23	88	4	69	36	2	2	59	1.21
27315--27367	23	2.4	22	82	14	65	30	3	0	66	1.10
27348--27381	17	2.0	17	88	0	50	41	0	0	58	0.98
28658--28697	19	2.2	19	86	4	55	57	2	2	37	1.26
32813--32948	3	46.0	3	86	5	197	64	0	33	1	1.02
33929--34029	46	2.2	46	89	0	157	30	18	14	35	1.92
34200--34265	34	1.9	35	84	3	89	22	24	13	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41040--41090	23	2.1	26	85	10	72	52	5	15	25	1.65
42397--42448	2	27.5	2	80	18	58	50	0	1	48	1.12
42387--42432	22	2.1	22	95	0	83	47	2	4	45	1.34
49874--49925	14	3.6	14	92	2	77	40	0	1	57	1.10
62861--62914	6	9.2	6	75	18	51	72	0	16	11	1.12
62851--62928	7	11.4	7	70	23	51	75	0	14	10	1.04
62864--62929	23	2.8	23	86	11	82	75	0	15	9	1.03
62872--62926	18	3.2	18	87	10	71	76	0	14	9	1.02
63783--64131	135	2.6	136	91	1	549	36	18	21	24	1.95
63920--64349	225	1.9	219	87	6	634	36	16	21	25	1.94
64378--64542	92	1.8	89	88	6	251	41	13	20	24	1.88
64051--64745	327	2.1	326	87	4	1007	37	16	20	25	1.93
64909--64957	13	3.7	13	83	2	62	36	0	2	61	1.08
64909--64956	16	3.1	15	82	11	53	35	0	2	62	1.07
67233--67419	93	2.0	94	92	3	315	29	16	9	44	1.78
67581--67631	20	2.5	20	87	0	66	37	13	13	35	1.85
68575--68611	2	18.5	2	100	0	74	51	0	0	48	1.00
71086--71228	32	4.5	32	73	8	96	37	13	13	35	1.85
71132--71213	31	2.6	31	77	7	85	41	13	10	34	1.79

Tables:   1

The End!