Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009418.1 Hibiscus syriacus cultivar Beakdansim tig00113376_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52919

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
198--233
14
2.6
14
95
4
65
41
0
0
58
0.98
2508--2700
96
2.0
97
96
1
361
29
16
8
45
1.78
2535--2730
96
2.1
95
85
2
259
32
15
9
42
1.79
2866--2916
20
2.5
20
87
0
66
37
13
13
35
1.85
3884--3920
2
18.5
2
100
0
74
51
0
0
48
1.00
6440--6583
32
4.5
32
75
6
105
36
13
14
35
1.85
10476--10525
19
2.7
18
82
14
57
34
2
0
64
1.05
10656--10688
16
2.1
16
88
5
50
42
6
3
48
1.43
12886--12943
29
2.0
29
86
6
82
48
0
0
51
1.00
12891--12943
8
7.1
8
80
18
53
49
0
0
50
1.00
12857--12967
21
4.9
22
69
18
59
45
0
1
52
1.11
13028--13062
14
2.5
14
100
0
70
31
5
0
62
1.18
13129--13225
28
3.2
29
77
11
72
48
3
1
47
1.24
13178--13235
14
4.1
14
76
8
55
56
1
0
41
1.09
22633--22774
31
4.6
31
94
0
230
21
19
20
39
1.93
23251--23293
21
2.0
21
82
8
52
32
4
13
48
1.63
27580--27623
20
2.2
20
100
0
88
40
13
18
27
1.88
27586--27629
20
2.2
20
91
0
70
45
18
11
25
1.82
28729--28774
23
2.0
23
91
0
74
45
19
6
28
1.75
35182--35222
18
2.3
18
100
0
82
51
21
0
26
1.48
35572--35914
128
2.7
129
78
3
316
31
12
12
43
1.80
35778--36528
200
3.8
199
85
2
979
32
12
14
40
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39283--39338
21
2.7
19
76
15
58
25
21
21
32
1.98
40090--40205
21
5.6
21
81
10
130
30
26
20
22
1.98
40062--40205
62
2.3
64
85
5
188
31
24
20
23
1.98
40214--40372
21
7.6
21
83
9
200
23
20
24
30
1.98
40174--40364
104
1.8
104
89
2
276
25
23
21
29
1.99
40214--40375
62
2.6
63
85
8
224
24
20
24
31
1.98
40619--40654
17
2.1
17
89
0
54
50
2
13
33
1.57
48071--48128
27
2.1
29
93
6
102
48
3
44
3
1.36
49072--49171
30
3.3
30
87
0
128
44
12
9
35
1.73
49277--49332
30
1.9
30
85
3
78
48
5
7
39
1.54

Tables:   1

The End!