genome.fa.s942.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000942.1 Hibiscus syriacus cultivar Beakdansim tig00001882_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96415

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3201--3335	59	2.3	59	82	2	162	40	13	8	38	1.74
4400--4446	18	2.5	18	80	13	51	53	2	0	44	1.12
6090--6153	27	2.3	27	86	2	83	25	17	12	45	1.83
6097--6171	23	3.1	23	75	14	69	29	14	13	42	1.84
10827--10856	15	1.9	16	93	6	53	76	0	16	6	0.99
23489--23526	17	2.3	17	86	4	51	34	0	7	57	1.28
28078--28102	2	12.5	2	100	0	50	48	0	0	52	1.00
28853--28949	20	4.8	20	77	5	88	36	15	20	27	1.93
28863--28939	40	1.9	40	84	5	102	38	15	19	25	1.91
28791--28982	20	9.4	20	71	9	86	28	20	20	30	1.97
28995--29049	21	2.6	21	88	0	83	18	16	30	34	1.93
29664--29701	5	7.8	5	97	2	69	0	42	21	36	1.53
29699--29730	6	5.3	6	100	0	64	0	15	50	34	1.45
29727--29751	6	4.2	6	100	0	50	32	0	32	36	1.58
29699--29736	18	2.1	18	90	0	58	5	13	47	34	1.65
29847--29914	21	3.3	21	73	8	77	35	23	20	20	1.96
29835--29914	40	2.0	42	92	5	137	37	20	20	22	1.94
30364--30416	20	2.6	20	81	3	61	35	26	11	26	1.90
30433--30615	57	3.2	57	84	0	249	37	22	13	26	1.91
30933--31072	58	2.4	57	90	1	217	28	14	22	35	1.93
31044--31158	20	5.7	20	71	15	74	24	15	27	32	1.95
31077--31134	22	2.8	21	84	7	73	29	13	27	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41307--41354	20	2.5	20	89	3	71	43	20	0	35	1.52
44669--44701	11	3.1	11	86	4	50	33	0	0	66	0.92
44666--44703	15	2.5	15	83	8	51	34	0	0	65	0.93
52405--52561	21	7.8	20	72	7	84	38	24	17	19	1.92
52527--52721	20	9.7	20	77	9	173	36	25	18	18	1.94
52528--52722	40	4.9	39	81	5	194	36	25	18	18	1.94
52528--52721	60	3.2	60	85	0	262	36	25	19	19	1.95
53102--53172	33	2.2	33	89	0	106	12	22	16	47	1.80
53252--53324	21	3.7	21	80	14	100	46	17	24	10	1.80
53251--53324	38	1.9	38	97	0	139	45	17	25	10	1.81
53355--53424	19	3.9	19	76	17	87	10	22	22	44	1.83
53382--53437	14	3.7	14	72	22	51	8	25	25	41	1.84
53363--53445	33	2.5	33	94	1	150	9	24	21	44	1.82
55135--55507	93	4.1	93	97	1	700	21	12	19	46	1.83
55135--55507	185	2.0	183	96	2	694	21	12	19	46	1.83
55552--55628	19	4.3	19	76	17	83	45	29	15	9	1.77
55624--55758	19	7.6	19	72	16	110	11	18	22	46	1.82
55629--55721	33	2.8	33	90	0	150	11	19	20	48	1.80
57669--57704	14	2.6	14	95	0	63	33	0	22	44	1.53
57811--57904	19	5.2	19	82	13	99	46	17	21	14	1.83
57815--57926	53	2.1	53	98	1	217	44	17	24	13	1.85
57933--58085	33	4.5	33	74	16	159	13	22	17	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57955--58171	19	12.4	19	77	19	249	13	21	17	46	1.83
57933--58143	52	4.0	52	99	0	413	13	23	17	45	1.83
57974--58185	33	6.2	33	77	14	234	13	22	18	46	1.83
60473--60497	12	2.1	12	100	0	50	0	28	0	72	0.86
60685--60742	24	2.4	24	97	0	107	39	20	15	24	1.91
61420--61649	20	11.5	20	84	3	221	20	17	24	36	1.94
61616--61713	21	4.8	20	75	15	83	22	17	22	37	1.94
61616--61714	42	2.4	43	78	8	107	22	17	23	37	1.94
61985--62013	14	2.0	15	93	6	51	20	0	10	68	1.18
68292--68568	82	3.4	80	81	4	288	34	13	14	37	1.86
70209--70245	17	2.2	17	95	0	65	21	0	18	59	1.38
73833--74228	187	2.1	187	87	4	579	43	4	7	44	1.51
78664--78740	31	2.5	30	79	12	84	41	1	3	53	1.27
79463--79529	31	2.2	30	84	10	82	52	2	1	43	1.25
80916--81108	30	6.4	29	84	7	183	31	52	7	7	1.58
80934--81108	60	2.9	60	93	0	289	32	52	7	8	1.60
80916--81108	90	2.1	90	86	1	262	31	52	7	7	1.58
88261--88288	4	7.0	4	100	0	56	25	0	75	0	0.81
88373--88445	31	2.4	31	79	4	96	27	27	8	36	1.85
89813--89854	21	2.0	21	86	4	59	52	7	9	30	1.61
93341--93386	18	2.6	18	96	0	83	58	4	36	0	1.18
94190--94251	31	1.9	31	83	6	79	37	4	25	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95396--95457	30	2.1	28	91	5	97	24	25	9	40	1.85

Tables:   1

The End!