genome.fa.s9422.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009422.1 Hibiscus syriacus cultivar Beakdansim tig00113396_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48853

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
934--984	20	2.5	21	90	3	77	41	5	3	49	1.45
949--1026	30	2.5	31	79	10	79	48	2	2	46	1.29
981--1027	21	2.2	22	81	11	62	55	0	0	44	0.99
981--1038	30	1.9	31	89	6	93	53	0	0	46	1.00
3275--3322	21	2.3	21	92	0	78	31	29	16	22	1.96
4306--4343	20	1.9	20	84	10	51	76	0	13	10	1.02
5795--5878	22	3.8	22	71	14	66	45	0	0	54	0.99
5823--5876	20	2.6	20	75	16	56	42	0	0	57	0.98
6033--6114	26	3.2	26	72	16	71	51	1	1	46	1.16
6124--6207	31	2.8	32	72	13	79	48	2	0	48	1.14
6152--6227	23	3.3	23	77	15	84	48	1	0	50	1.09
6154--6200	18	2.6	19	83	6	53	42	2	0	55	1.12
6192--6237	17	2.7	17	83	6	58	50	2	0	47	1.13
6560--6592	17	1.9	17	88	11	50	33	21	27	18	1.96
8597--8668	32	2.2	32	82	4	83	23	27	29	19	1.98
13876--14033	21	7.8	20	70	7	86	37	24	17	20	1.93
14001--14390	20	19.5	20	83	5	457	35	25	18	20	1.95
15067--15113	24	2.0	24	87	8	69	25	14	21	38	1.92
15288--15312	12	2.1	12	100	0	50	72	0	28	0	0.86
17593--17865	19	15.4	19	81	15	345	46	17	21	13	1.83
17593--17887	33	8.5	33	78	14	160	46	17	21	14	1.84
17621--17887	52	5.0	52	92	5	446	46	16	22	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17894--17976	20	4.6	19	81	15	113	14	24	18	43	1.87
18081--18117	14	2.6	14	91	0	65	45	21	0	32	1.52
20065--20121	14	3.7	14	77	20	60	45	22	21	10	1.82
20046--20138	33	2.8	33	95	0	168	47	21	20	10	1.80
20009--20143	19	7.6	19	76	16	128	45	23	19	11	1.82
20139--20253	19	6.3	19	81	10	141	8	16	28	46	1.77
20297--20675	92	4.1	93	98	0	735	46	18	12	22	1.83
20297--20675	185	2.0	185	98	1	733	46	18	12	22	1.83
22392--22489	19	5.7	18	73	22	86	42	22	24	10	1.84
22371--22484	33	3.5	33	93	1	203	44	21	24	9	1.82
22379--22467	14	5.7	14	73	24	72	41	23	25	8	1.83
22501--22555	14	3.6	14	73	21	56	9	25	23	41	1.83
22485--22555	33	2.2	33	94	0	124	8	22	25	43	1.81
22496--22577	33	2.5	33	89	2	119	9	25	21	42	1.84
22508--22596	20	4.8	20	72	19	75	12	24	19	43	1.85
22679--22746	32	2.2	32	89	2	102	47	20	20	11	1.81
22697--22746	16	3.0	18	69	22	54	44	22	22	12	1.85
22925--22978	22	2.5	21	78	3	63	20	16	38	24	1.92
23124--23316	20	9.6	20	82	5	219	19	19	25	35	1.95
23124--23316	60	3.2	60	83	0	251	19	19	25	35	1.95
25660--25689	2	15.0	2	100	0	60	50	0	0	50	1.00
25973--26015	17	2.5	17	92	0	68	25	18	32	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25988--26036	24	2.1	23	88	3	71	22	26	26	24	2.00
34614--34665	9	5.8	9	77	13	54	23	1	1	73	1.04
34603--34668	25	2.7	25	81	11	75	24	3	1	71	1.09
38445--38489	21	2.1	21	87	0	63	35	6	20	37	1.79
39120--39409	111	2.6	111	89	2	456	25	14	13	46	1.80
41998--42042	21	2.1	22	84	12	58	31	4	0	64	1.13
44231--44277	19	2.5	19	86	10	69	38	2	0	59	1.09
46859--46908	19	2.5	20	93	3	84	42	26	16	16	1.88
46919--47209	20	14.4	20	76	6	230	39	23	17	19	1.93
46939--47209	40	6.7	40	82	7	316	39	22	17	20	1.92
46939--47196	101	2.6	101	77	9	256	39	22	17	20	1.92
46896--47151	121	2.1	122	87	2	363	38	23	17	20	1.93
46939--47209	121	2.2	121	84	2	348	39	22	17	20	1.92
48004--48057	24	2.2	24	93	0	90	20	18	20	40	1.91

Tables:   1

The End!