Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01009423.1 Hibiscus syriacus cultivar Beakdansim tig00113397_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 112690
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32


File 2 of 2

Found at i:110583 original size:57 final size:56

Alignment explanation


    Indices: 110426--110614  Score: 245
    Period size: 58  Copynumber: 3.3  Consensus size: 56

     110416 ACCCGACCCG

                        *               *    *                       *
     110426 GTGACATTTTGGAAATTATTTTGAAAAAGGTGATATTCTGGAAATTATTTTGGAAAAT
          1 GTGACATTTTGGGAATTATTTTGAAAAAAGTGACATTCTGG-AATTATTTT-GAAAAA

                                          *       *                  
     110484 GTGACATTTTGGGAAATTATTTT-AAAAAAATGACATTATGGAATTATTTTGAAAAA
          1 GTGACATTTTGGG-AATTATTTTGAAAAAAGTGACATTCTGGAATTATTTTGAAAAA

              *           *  *                                       
     110540 GTAACATTTTGGGATTTTTTTTGAAAAAAGTGACATTCTTGGAATTATTTTGAAAAA
          1 GTGACATTTTGGGAATTATTTTGAAAAAAGTGACATTC-TGGAATTATTTTGAAAAA

                              
     110597 GATGACATTTTGGGAATT
          1 G-TGACATTTTGGGAATT

     110615 TTCAAATATG


Statistics
Matches: 114,  Mismatches: 13, Indels: 8
        0.84            0.10        0.06

Matches are distributed among these distances:
  55    7  0.06
  56   30  0.26
  57   28  0.25
  58   40  0.35
  59    9  0.08

ACGTcount: A:0.37, C:0.04, G:0.19, T:0.40


Consensus pattern (56 bp):   
GTGACATTTTGGGAATTATTTTGAAAAAAGTGACATTCTGGAATTATTTTGAAAAA

Done.