Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009425.1 Hibiscus syriacus cultivar Beakdansim tig00113400_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61791

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
360--394
2
18.0
2
94
5
63
48
0
0
51
1.00
363--392
15
2.0
15
100
0
60
46
0
0
53
1.00
361--394
17
2.0
17
100
0
68
47
0
0
52
1.00
438--480
22
2.0
22
85
0
59
51
9
13
25
1.71
2174--3469
449
2.9
447
91
2
2064
31
13
14
40
1.85
3456--3574
44
2.7
44
94
0
202
26
10
13
48
1.75
5069--5107
18
2.2
18
90
0
60
53
10
5
30
1.56
5067--5126
24
2.5
24
86
0
84
50
13
6
30
1.67
7673--7715
18
2.4
18
84
7
52
32
2
37
27
1.70
8361--10246
200
9.4
200
88
1
2509
31
14
12
40
1.83
8086--10246
400
5.4
398
87
2
2774
32
15
12
40
1.83
8086--10246
600
3.6
595
87
3
2884
32
15
12
40
1.83
12796--12847
19
2.7
19
74
14
52
34
7
3
53
1.48
12870--12921
27
1.9
27
96
0
95
38
13
23
25
1.91
19343--19388
3
15.3
3
100
0
92
67
0
0
32
0.91
20120--20188
18
3.7
18
76
14
68
49
0
0
50
1.00
20138--20186
25
2.0
25
87
0
71
46
0
0
53
1.00
33306--33366
30
2.0
30
87
6
88
42
11
6
39
1.67
35768--35851
21
3.9
21
78
9
80
15
25
36
22
1.93
41911--41971
30
2.0
30
84
6
79
44
9
6
39
1.64
42216--42297
39
2.1
39
84
6
105
63
1
13
21
1.36
43496--43542
12
4.2
11
80
20
53
78
2
2
17
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43551--43583
15
2.1
16
88
5
50
39
9
6
45
1.61
43545--43612
30
2.3
30
82
5
84
47
8
2
41
1.50
43545--43694
67
2.2
66
82
6
160
45
8
3
42
1.51
43575--43694
31
3.5
35
80
16
126
45
8
3
43
1.50
43543--43678
31
4.2
31
69
19
91
46
8
2
42
1.48
43714--43745
2
16.0
2
100
0
64
50
0
0
50
1.00
43641--43721
39
2.2
35
78
10
81
43
7
4
44
1.54
45497--45566
29
2.4
29
88
4
97
28
14
11
45
1.79
45638--45709
24
2.6
29
72
22
82
36
8
11
44
1.70
47438--47464
3
9.0
3
100
0
54
33
0
0
66
0.92
53209--53255
23
2.1
23
84
4
60
53
10
2
34
1.48
59972--60014
19
2.3
19
87
0
59
37
20
16
25
1.93

Tables:   1

The End!