Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009426.1 Hibiscus syriacus cultivar Beakdansim tig00113402_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116535

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2895--3044
79
1.9
77
81
10
180
42
8
5
44
1.56
19997--20034
19
2.0
20
89
5
60
36
13
5
44
1.66
20777--20826
18
2.8
17
82
11
55
76
6
14
4
1.13
26574--26603
13
2.4
13
94
5
53
43
0
30
26
1.55
38048--38089
14
2.8
15
78
10
50
14
11
4
69
1.34
38048--38109
32
2.1
28
85
11
79
9
11
4
74
1.21
44199--44245
20
2.3
20
96
0
85
38
19
25
17
1.92
49254--49283
13
2.4
13
94
5
53
43
0
30
26
1.55
54427--54454
13
2.2
13
100
0
56
35
0
39
25
1.56
54799--54841
20
2.2
20
87
4
61
51
6
9
32
1.61
58240--58274
16
2.1
17
89
10
54
0
11
5
82
0.82
59032--59080
19
2.5
20
86
3
64
42
6
14
36
1.70
62502--62540
19
2.1
19
85
4
53
56
17
15
10
1.66
71164--71192
15
2.0
15
93
6
51
0
20
3
75
0.94
73676--73726
20
2.5
19
77
20
50
7
13
3
74
1.18
76376--76418
20
2.2
20
87
4
61
51
6
9
32
1.61
78427--78459
16
2.1
16
100
0
66
42
6
18
33
1.75
83863--83895
16
2.1
16
100
0
66
42
6
18
33
1.75
84431--84469
20
2.0
20
90
5
62
43
10
12
33
1.77
91176--91290
58
2.0
58
100
0
230
25
26
17
31
1.97
97369--97398
13
2.4
13
94
5
53
43
0
30
26
1.55
107291--107331
17
2.5
17
80
7
50
78
0
9
12
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108165--108197
14
2.3
15
89
5
50
0
9
12
78
0.95
110232--110271
20
1.9
22
85
10
57
40
12
30
17
1.86
112760--112803
23
2.0
21
82
13
52
36
18
11
34
1.86

Tables:   1

The End!