genome.fa.s9429.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009429.1 Hibiscus syriacus cultivar Beakdansim tig00113411_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66614

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15001--15445	227	2.0	225	92	2	750	45	8	7	39	1.61
18011--18076	33	2.0	33	87	0	96	28	1	45	24	1.62
19860--19903	19	2.4	19	92	3	72	31	2	9	56	1.43
19986--21396	198	7.1	198	96	1	2550	37	14	15	31	1.88
19986--21396	394	3.6	395	96	1	2564	37	14	15	31	1.88
22873--22953	3	27.0	3	78	0	81	34	6	34	24	1.81
24307--24971	183	3.7	183	97	0	1246	35	14	15	33	1.89
27510--27572	23	2.7	23	85	0	81	36	6	17	39	1.75
27510--27582	23	3.2	23	82	3	76	35	5	17	41	1.73
27941--28003	23	2.7	23	90	0	90	36	6	19	38	1.77
27941--28013	23	3.2	23	86	3	85	35	5	19	39	1.75
28369--28431	23	2.7	23	90	0	90	36	6	19	38	1.77
28369--28441	23	3.2	23	86	3	85	35	5	19	39	1.75
27416--28859	430	3.4	431	97	1	2757	40	8	13	38	1.74
28818--28861	23	1.9	23	100	0	88	36	4	15	43	1.68
29064--29100	18	2.1	18	89	0	56	32	5	10	51	1.60
29056--29102	24	2.0	24	86	0	67	34	4	14	46	1.64
34228--34271	16	2.9	15	80	6	52	25	4	0	70	1.06
35353--36070	83	8.7	83	82	0	738	29	19	16	34	1.94
35353--36072	249	2.9	245	83	4	845	30	19	16	34	1.94
36449--36639	65	2.9	66	81	4	251	27	13	25	34	1.93
40057--40124	17	3.9	17	76	3	64	39	8	13	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42353--42495	77	1.9	77	86	0	205	21	15	16	46	1.84
55567--55605	20	2.0	20	89	0	60	64	10	20	5	1.44
57349--57398	16	3.2	16	77	5	57	44	10	10	36	1.72
57797--57826	13	2.3	13	94	0	51	46	10	3	40	1.54
57837--57935	33	3.0	33	94	1	164	46	15	6	32	1.70
57930--57969	21	1.9	21	94	0	71	47	7	15	30	1.72
60360--60397	20	1.9	20	88	0	58	50	13	15	21	1.78
61815--61853	20	2.0	20	94	0	69	35	5	17	41	1.72
61867--61906	20	2.0	21	85	14	57	35	5	12	47	1.63
61814--61963	53	2.9	52	94	3	266	32	6	12	48	1.65
61920--61959	20	2.0	20	95	0	71	37	5	12	45	1.64
65560--65587	12	2.3	12	100	0	56	42	17	32	7	1.77
66537--66575	20	2.0	20	94	0	69	35	5	17	41	1.72

Tables:   1

The End!