genome.fa.s9431.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009431.1 Hibiscus syriacus cultivar Beakdansim tig00113414_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  272534

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7442--7554	59	1.9	59	85	7	158	23	16	21	38	1.93
11046--11093	22	2.1	24	88	7	73	31	2	14	52	1.54
22767--22814	22	2.1	24	84	7	64	31	4	14	50	1.62
24749--24778	14	2.1	15	93	6	53	43	13	3	40	1.60
29564--29624	30	2.0	30	90	0	95	29	24	19	26	1.99
32725--32759	18	1.9	18	88	0	52	54	0	17	28	1.43
36933--36967	18	1.9	18	88	0	52	54	0	17	28	1.43
52588--52626	16	2.5	16	87	4	53	56	0	23	20	1.42
52996--53031	18	2.0	18	100	0	72	22	22	11	44	1.84
55598--55711	59	1.9	59	85	3	158	25	16	20	37	1.93
57956--57999	22	2.0	21	86	4	61	38	15	29	15	1.89
58565--58606	15	3.0	14	83	13	59	14	19	0	66	1.25
64029--64058	15	1.9	16	93	6	53	10	10	6	73	1.25
71852--71915	11	5.6	11	81	17	60	84	15	0	0	0.63
71855--71915	9	6.8	9	86	5	88	85	14	0	0	0.60
71864--71922	20	3.1	18	86	13	75	81	16	1	0	0.78
71856--71915	29	2.1	29	82	14	72	85	15	0	0	0.61
77977--78024	24	2.0	24	83	0	60	31	18	12	37	1.88
85330--85375	23	2.0	23	83	8	58	36	6	8	47	1.60
86971--87030	19	3.2	19	88	6	79	75	3	16	5	1.12
89860--89905	23	2.0	23	83	8	58	36	6	8	47	1.60
92657--93078	80	5.1	79	79	7	308	31	23	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92657--93117	84	5.6	83	79	6	411	32	22	19	25	1.97
92657--93111	249	1.8	244	82	6	576	31	23	19	25	1.98
97553--97626	5	15.8	5	71	18	61	1	20	2	75	1.00
97550--97621	11	6.5	11	73	13	58	1	20	2	75	1.01
97550--97585	16	2.2	17	85	14	58	0	22	0	77	0.76
97560--97626	8	7.9	8	74	22	57	1	20	2	74	1.03
97561--97626	16	3.8	17	79	16	66	1	21	3	74	1.04
97546--97619	27	2.7	27	83	12	80	1	22	2	72	1.04
97577--97628	17	2.9	18	81	18	65	1	19	5	73	1.14
99353--99657	167	1.8	167	87	2	452	32	22	16	28	1.95
99353--99657	84	3.7	83	77	3	317	32	22	16	28	1.95
100267--100523	36	6.9	35	74	18	211	45	3	6	44	1.45
100266--100516	111	2.2	112	88	4	373	45	3	6	44	1.46
100267--100555	37	7.8	37	78	10	268	45	3	6	44	1.45
100267--100545	111	2.5	111	85	5	366	45	3	6	44	1.44
100267--100555	75	3.9	72	80	9	269	45	3	6	44	1.45
100570--100629	5	12.2	5	82	3	68	21	6	0	71	1.08
100569--100643	19	3.9	19	82	5	89	25	5	0	69	1.09
100553--100643	39	2.5	37	83	7	105	27	5	0	67	1.13
101999--102042	19	2.3	19	88	4	61	18	9	0	72	1.10
102830--102883	19	2.8	19	88	2	72	42	7	11	38	1.68
103736--103778	20	2.2	20	95	4	79	46	4	11	37	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104321--104360	18	2.2	18	100	0	80	12	27	12	47	1.77
107593--107646	19	2.8	20	88	5	83	42	7	11	38	1.68
108126--108165	9	4.3	9	82	17	55	65	0	22	12	1.26
108124--108165	13	3.0	14	86	13	68	64	0	21	14	1.29
125873--125925	21	2.6	20	83	13	72	45	7	15	32	1.74
127537--127621	11	7.2	11	72	22	66	31	35	3	29	1.75
127534--127638	36	2.9	36	92	1	176	30	35	4	29	1.78
131096--131180	11	7.2	11	72	22	66	31	36	3	28	1.74
131093--131197	36	2.9	36	95	1	185	30	36	4	28	1.78
141349--141375	4	6.8	4	100	0	54	51	0	22	25	1.48
143674--143716	18	2.4	18	96	0	77	39	9	4	46	1.57
143683--143724	18	2.6	16	88	11	59	42	4	2	50	1.36
145941--146105	90	1.8	91	89	1	260	29	21	27	21	1.99
147766--147811	24	1.9	24	82	8	58	30	15	23	30	1.95
149914--150095	90	2.0	91	88	3	269	27	22	28	21	1.99
158001--158174	90	1.9	91	85	3	244	28	21	27	21	1.99
159830--159881	24	2.2	24	82	0	59	30	19	21	28	1.97
161145--161199	23	2.4	24	78	6	69	7	14	10	67	1.41
163404--163438	18	1.9	18	88	0	52	25	14	17	42	1.86
163861--163912	24	2.2	24	82	0	59	32	19	19	28	1.96
168787--168852	31	2.1	31	94	0	114	39	22	13	24	1.90
177631--177687	28	2.0	29	93	3	98	40	22	15	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184721--184762	21	2.0	21	85	0	57	30	16	7	45	1.74
201983--202007	10	2.5	10	100	0	50	24	0	12	64	1.27
216511--218112	682	2.3	682	95	1	2863	32	16	14	35	1.90
233167--233288	59	2.1	59	87	0	172	29	22	19	28	1.98
235759--235812	10	5.2	10	82	6	63	42	0	0	57	0.98
235783--235821	11	3.7	10	86	10	51	48	0	0	51	1.00
235835--235917	8	11.4	8	68	23	58	44	0	0	55	0.99
235835--235892	23	2.5	23	97	0	107	43	0	0	56	0.99
235801--235890	15	5.6	16	68	16	53	44	0	2	53	1.13
235835--235899	23	3.0	23	89	8	84	44	0	0	55	0.99
235887--235913	14	1.9	14	100	0	54	40	0	0	59	0.98
237037--237195	8	21.9	7	75	16	107	1	16	0	81	0.79
237033--237204	9	21.0	8	75	18	142	1	16	0	81	0.79
237045--237204	19	8.6	18	73	18	132	1	16	0	81	0.79
237045--237204	56	2.8	53	78	15	171	1	16	0	81	0.79
237045--237204	31	5.2	32	74	16	99	1	16	0	81	0.79
237033--237187	82	1.9	82	84	11	210	1	16	0	81	0.79
237035--237187	1	153.0	1	70	0	63	1	15	0	82	0.78
237932--237981	19	2.6	19	81	12	66	40	10	14	36	1.79
242099--242148	26	1.9	26	100	0	100	36	6	30	28	1.81
244720--244752	12	2.8	12	95	0	57	72	6	18	3	1.18
251026--251062	16	2.4	16	86	8	51	2	10	8	78	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265168--265210	20	2.2	20	91	4	70	46	2	11	39	1.53
269029--269071	16	2.5	19	75	24	51	51	6	18	23	1.70
271908--272032	58	2.2	58	91	2	198	30	23	17	28	1.97

Tables:   1

The End!