Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009432.1 Hibiscus syriacus cultivar Beakdansim tig00113421_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 327225
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
File 2 of 2
Found at i:244662 original size:25 final size:25
Alignment explanation
Indices: 244580--244662 Score: 60
Period size: 27 Copynumber: 3.2 Consensus size: 25
244570 CGGCACTAAG
244580 TGTGCATTTCACGGAATTCATCCTA
1 TGTGCATTTCACGGAATTCATCCTA
* * * * * *
244605 TGTGGATGAATAACTG-TTTCAGCACTAA
1 TGTGCAT--TTCACGGAATTCATC-CT-A
244633 GTGTGCATTTCACGGAATTCATCCTA
1 -TGTGCATTTCACGGAATTCATCCTA
244659 TGTG
1 TGTG
244663 GATGAATAAT
Statistics
Matches: 40, Mismatches: 12, Indels: 12
0.62 0.19 0.19
Matches are distributed among these distances:
25 10 0.25
26 6 0.15
27 12 0.30
28 6 0.15
29 6 0.15
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.35
Consensus pattern (25 bp):
TGTGCATTTCACGGAATTCATCCTA
Found at i:244998 original size:54 final size:54
Alignment explanation
Indices: 244526--244977 Score: 656
Period size: 54 Copynumber: 8.4 Consensus size: 54
244516 ATAAGCACTA
* * * *
244526 TGTGTATTTCATGAAATTCATCCTATGTGGATGAATAACCGTTTCGGCACTAAG
1 TGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGACACTAAG
*
244580 TGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACTGTTTC-AGCACTAAG
1 TGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGA-CACTAAG
* **
244634 TGTGCATTTCACGGAATTCATCCTATGTGGATGAATAATCGTTTCGGTACTAAG
1 TGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGACACTAAG
* *
244688 TGTGCATTTTAC-GAATTCATCTTATGTGGATGAATAACCGTTTCGACACTAAG
1 TGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGACACTAAG
* * * * *
244741 TGTGTATTTCACGAAATTTATCCTATGTGGATGAATATCCGTTTCGAAACTAAG
1 TGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGACACTAAG
* * *
244795 TGTGCATTTCACTGAATTCATCCTATGTGGATGAATAACCGTTTTGACACTATG
1 TGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGACACTAAG
* * * * *
244849 TGTGCACTTCACGAAATTCATCCTATATGGATGAATAACCGTTTTGGCACTAAG
1 TGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGACACTAAG
* *
244903 TGTGCATTTCACAGAATTCATCCTATGTGGATGAATAACCGTTTTGACACTAAG
1 TGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGACACTAAG
244957 TGTGCATTTCACGGAATTCAT
1 TGTGCATTTCACGGAATTCAT
244978 AATATCTTTA
Statistics
Matches: 354, Mismatches: 41, Indels: 6
0.88 0.10 0.01
Matches are distributed among these distances:
53 47 0.13
54 307 0.87
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (54 bp):
TGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCGTTTCGACACTAAG
Found at i:245041 original size:108 final size:108
Alignment explanation
Indices: 244533--245034 Score: 353
Period size: 108 Copynumber: 4.7 Consensus size: 108
244523 CTATGTGTAT
* ** * * * * * ** *
244533 TTCATGAAATTCATCCTATGTGGATGAATAACCGTTTCGGCACTAAGTGTGCATTTCACGGAATT
1 TTCACGAAATTCATAATATATGGATAAATAACCGTATGGGCACTAAGGGTGCATTTCAAAGAAAT
** * * *
244598 CATCCTATGTGGATGAATAACTG-TTTCAGCACTAAGTGTGCAT
66 CATAATATGTGGATGAATAACCGTTTTGA-CACTAAGTGTGCAC
* ** * * * * * * * * * *
244641 TTCACGGAATTCATCCTATGTGGATGAATAATCGTTTCGGTACTAAGTGTGCATTT-TACGAATT
1 TTCACGAAATTCATAATATATGGATAAATAACCGTATGGGCACTAAGGGTGCATTTCAAAGAAAT
** * * *
244705 CATCTTATGTGGATGAATAACCGTTTCGACACTAAGTGTGTAT
66 CATAATATGTGGATGAATAACCGTTTTGACACTAAGTGTGCAC
* ** * * * * * ** * ** *
244748 TTCACGAAATTTATCCTATGTGGATGAATATCCGTTTCGAAACTAAGTGTGCATTTCACTGAATT
1 TTCACGAAATTCATAATATATGGATAAATAACCGTATGGGCACTAAGGGTGCATTTCAAAGAAAT
** *
244813 CATCCTATGTGGATGAATAACCGTTTTGACACTATGTGTGCAC
66 CATAATATGTGGATGAATAACCGTTTTGACACTAAGTGTGCAC
** * * * * * *
244856 TTCACGAAATTCATCCTATATGGATGAATAACCGTTTTGGCACTAAGTGTGCATTTCACAGAATT
1 TTCACGAAATTCATAATATATGGATAAATAACCGTATGGGCACTAAGGGTGCATTTCAAAGAAAT
** *
244921 CATCCTATGTGGATGAATAACCGTTTTGACACTAAGTGTGCAT
66 CATAATATGTGGATGAATAACCGTTTTGACACTAAGTGTGCAC
* * ** *
244964 TTCACGGAATTCATAATATCTTTATAAATAACCGTATGGGCACTACGGGTGCATTAT-AAAGAAA
1 TTCACGAAATTCATAATATATGGATAAATAACCGTATGGGCACTAAGGGTGCATT-TCAAAGAAA
*
245028 TGATAAT
65 TCATAAT
245035 GAGTGGAAAA
Statistics
Matches: 340, Mismatches: 51, Indels: 6
0.86 0.13 0.02
Matches are distributed among these distances:
107 89 0.26
108 250 0.74
109 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34
Consensus pattern (108 bp):
TTCACGAAATTCATAATATATGGATAAATAACCGTATGGGCACTAAGGGTGCATTTCAAAGAAAT
CATAATATGTGGATGAATAACCGTTTTGACACTAAGTGTGCAC
Found at i:258151 original size:54 final size:54
Alignment explanation
Indices: 258069--258379 Score: 415
Period size: 54 Copynumber: 5.8 Consensus size: 54
258059 TTACCAAATA
* ** * * *
258069 GGCACTAAGTGTGGATTTCACATAATTCATCCTCTATGGATGAATAACCATTTT
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCATTTC
*
258123 GGCACTAAGTGTGCATTTCACGGAATTCATCCCATGTGGATGAATAACCATTTC
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCATTTC
*** ** *
258177 GGCACTAAGTGTGCATTTCAAAAAATTCATCCTATGTGGATGAATAACTGTTTT
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCATTTC
* * *
258231 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATATGGATAAATAATCATTTC
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCATTTC
** * *
258285 GAAACTAAGTGTGTATTTCACGGAATTCATCTTATGTGGATGAATAACCATTTC
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCATTTC
* **
258339 AGCACTAAGTGTATATTTCACGGAATTCATCCTATGTGGAT
1 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGAT
258380 AAGAAATAAT
Statistics
Matches: 222, Mismatches: 35, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 222 1.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (54 bp):
GGCACTAAGTGTGCATTTCACGGAATTCATCCTATGTGGATGAATAACCATTTC
Found at i:258271 original size:162 final size:162
Alignment explanation
Indices: 258069--258379 Score: 460
Period size: 162 Copynumber: 1.9 Consensus size: 162
258059 TTACCAAATA
* * * * * **
258069 GGCACTAAGTGTGGATTTCACATAATTCATCCTCTATGGATGAATAACCATTTTGGCACTAAGTG
1 GGCACTAAGTGTGCATTTCACAGAATTCATCCTATATGGATAAATAACCATTTCGAAACTAAGTG
* *
258134 TGCATTTCACGGAATTCATCCCATGTGGATGAATAACCATTTCGGCACTAAGTGTGCATTTCAAA
66 TGCATTTCACGGAATTCATCCCATGTGGATGAATAACCATTTCAGCACTAAGTGTACATTTCAAA
258199 AAATTCATCCTATGTGGATGAATAACTGTTTT
131 AAATTCATCCTATGTGGATGAATAACTGTTTT
* *
258231 GGCACTAAGTGTGCATTTCACGGAATTCATCCTATATGGATAAATAATCATTTCGAAACTAAGTG
1 GGCACTAAGTGTGCATTTCACAGAATTCATCCTATATGGATAAATAACCATTTCGAAACTAAGTG
* ** * **
258296 TGTATTTCACGGAATTCATCTTATGTGGATGAATAACCATTTCAGCACTAAGTGTATATTTCACG
66 TGCATTTCACGGAATTCATCCCATGTGGATGAATAACCATTTCAGCACTAAGTGTACATTTCAAA
*
258361 GAATTCATCCTATGTGGAT
131 AAATTCATCCTATGTGGAT
258380 AAGAAATAAT
Statistics
Matches: 131, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
162 131 1.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (162 bp):
GGCACTAAGTGTGCATTTCACAGAATTCATCCTATATGGATAAATAACCATTTCGAAACTAAGTG
TGCATTTCACGGAATTCATCCCATGTGGATGAATAACCATTTCAGCACTAAGTGTACATTTCAAA
AAATTCATCCTATGTGGATGAATAACTGTTTT
Found at i:261688 original size:40 final size:40
Alignment explanation
Indices: 261557--261789 Score: 258
Period size: 40 Copynumber: 5.8 Consensus size: 40
261547 TAGAACTTGG
* *
261557 TTCTATATGCA-AACATCAGGTTACAA-CTAAAAGAAATCAGGT
1 TTCTATATG-ATAA-ATCAGGTTGCAACCT-AAA-AATTCAGGT
* * * *
261599 TTTTATATGATAAATTATGTTGCAA-GTAAAAA-TCAGGT
1 TTCTATATGATAAATCAGGTTGCAACCTAAAAATTCAGGT
*
261637 TTCTATGTGATAAATCAGGTTGCAACCTAAAAATTCAGGT
1 TTCTATATGATAAATCAGGTTGCAACCTAAAAATTCAGGT
* *
261677 TCCTATATGATAAATCAGGTTGCAACCTAAAAATTTAGGT
1 TTCTATATGATAAATCAGGTTGCAACCTAAAAATTCAGGT
* * * * *
261717 TGCTATAAGATAAATCAGGTTGAAATCTAAAAATTTAGGT
1 TTCTATATGATAAATCAGGTTGCAACCTAAAAATTCAGGT
* *
261757 TTCTATAAGATAAATCAGGTTGCAACCCAAAAA
1 TTCTATATGATAAATCAGGTTGCAACCTAAAAA
261790 CCTGCTTCCT
Statistics
Matches: 167, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
38 27 0.16
39 8 0.05
40 111 0.66
41 11 0.07
42 10 0.06
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.31
Consensus pattern (40 bp):
TTCTATATGATAAATCAGGTTGCAACCTAAAAATTCAGGT
Found at i:261736 original size:20 final size:20
Alignment explanation
Indices: 261628--261779 Score: 73
Period size: 20 Copynumber: 7.6 Consensus size: 20
261618 TTGCAAGTAA
* **
261628 AAATCAGGTTTCTATGTGAT
1 AAATCAGGTTGCTATAAGAT
*
261648 AAATCAGGTTGCAACCTAA-A-
1 AAATCAGGTTGCTA--TAAGAT
* * *
261668 AATTCAGGTTCCTATATGAT
1 AAATCAGGTTGCTATAAGAT
*
261688 AAATCAGGTTGCAACCTAA-A-
1 AAATCAGGTTGCTA--TAAGAT
* *
261708 AATTTAGGTTGCTATAAGAT
1 AAATCAGGTTGCTATAAGAT
* *
261728 AAATCAGGTTGAAATCTAA-A-
1 AAATCAGGTTG--CTATAAGAT
* * *
261748 AATTTAGGTTTCTATAAGAT
1 AAATCAGGTTGCTATAAGAT
261768 AAATCAGGTTGC
1 AAATCAGGTTGC
261780 AACCCAAAAA
Statistics
Matches: 93, Mismatches: 27, Indels: 24
0.65 0.19 0.17
Matches are distributed among these distances:
18 9 0.10
19 3 0.03
20 71 0.76
21 3 0.03
22 7 0.08
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.32
Consensus pattern (20 bp):
AAATCAGGTTGCTATAAGAT
Found at i:265108 original size:19 final size:19
Alignment explanation
Indices: 265067--265108 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
265057 ATGTCAGAAT
*
265067 GGTATCGATACCCTGAGGA
1 GGTATCGATACCCTGAAGA
265086 GGTATCGATACCCTTGAAG-
1 GGTATCGATACCC-TGAAGA
265105 GGTA
1 GGTA
265109 GTATCGGTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (19 bp):
GGTATCGATACCCTGAAGA
Found at i:265678 original size:21 final size:21
Alignment explanation
Indices: 265654--265704 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
265644 AGTCGAGGGT
* *
265654 TTTATGTGGTCCTCCGAGATA
1 TTTATGTGGTCATCCGAGACA
*
265675 TTTATGTGGTCATTCGAGACA
1 TTTATGTGGTCATCCGAGACA
*
265696 ATTATGTGG
1 TTTATGTGG
265705 CACTTCAGTG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.22, C:0.14, G:0.25, T:0.39
Consensus pattern (21 bp):
TTTATGTGGTCATCCGAGACA
Found at i:265731 original size:23 final size:23
Alignment explanation
Indices: 265698--265750 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
265688 TCGAGACAAT
265698 TATGTGGCACTTCAGTGCAAACC
1 TATGTGGCACTTCAGTGCAAACC
* * * *
265721 TATGTGTCACTTCGGTGTAATCC
1 TATGTGGCACTTCAGTGCAAACC
265744 TATGTGG
1 TATGTGG
265751 TCTTTTGGGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.34
Consensus pattern (23 bp):
TATGTGGCACTTCAGTGCAAACC
Found at i:277594 original size:15 final size:15
Alignment explanation
Indices: 277574--277608 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
277564 CCGTAGGACC
277574 ACTACGTCCCGAAGG
1 ACTACGTCCCGAAGG
277589 ACTACGTCCCGAAGG
1 ACTACGTCCCGAAGG
277604 ACTAC
1 ACTAC
277609 AGAACCCTCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.29, C:0.34, G:0.23, T:0.14
Consensus pattern (15 bp):
ACTACGTCCCGAAGG
Found at i:281564 original size:23 final size:23
Alignment explanation
Indices: 281513--281594 Score: 91
Period size: 23 Copynumber: 3.7 Consensus size: 23
281503 TCGAGACAAA
*
281513 TATGTGGCACTTCAGG-ACAAA--
1 TATGTGGCACTTC-GGTGCAAACC
281534 TATGTGGCACTTCGGTGCAAACC
1 TATGTGGCACTTCGGTGCAAACC
*
281557 TATGTGGCACTTCGGTGCAATCC
1 TATGTGGCACTTCGGTGCAAACC
*
281580 AATGTGGTCA-TTCGG
1 TATGTGG-CACTTCGG
281595 GACAATTTTG
Statistics
Matches: 54, Mismatches: 3, Indels: 6
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.04
21 17 0.31
23 33 0.61
24 2 0.04
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (23 bp):
TATGTGGCACTTCGGTGCAAACC
Found at i:281614 original size:21 final size:21
Alignment explanation
Indices: 281470--281616 Score: 102
Period size: 21 Copynumber: 6.8 Consensus size: 21
281460 GTTGAGGGTT
* * *
281470 TTATGTGGTACTCCGGGATAA
1 TTATGTGGCACTTCGGGACAA
** *
281491 TTATGTGGTGCTTCGAGACAA
1 TTATGTGGCACTTCGGGACAA
* *
281512 ATATGTGGCACTTCAGGACAA
1 TTATGTGGCACTTCGGGACAA
*
281533 ATATGTGGCACTTCGGTG-CAAA
1 TTATGTGGCACTTCGG-GAC-AA
*
281555 CCTATGTGGCACTTCGGTG-CAA
1 -TTATGTGGCACTTCGG-GACAA
*
281577 TCCAATGTGGTCA-TTCGGGACAA
1 T--TATGTGG-CACTTCGGGACAA
*
281600 TTTTGTGGCACTTCGGG
1 TTATGTGGCACTTCGGG
281617 GCAAATTACG
Statistics
Matches: 103, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
20 2 0.02
21 60 0.58
22 6 0.06
23 33 0.32
24 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (21 bp):
TTATGTGGCACTTCGGGACAA
Found at i:283354 original size:54 final size:54
Alignment explanation
Indices: 283296--283501 Score: 306
Period size: 54 Copynumber: 3.8 Consensus size: 54
283286 CATACTATCA
* * * ** * *
283296 TTCATAAACCTATTATGAATTCCGTGGGTTACACACATAGTGCCTAAACGGTTG
1 TTCATCAACATATGATGAATTCCGTGAATTGCACACATAGTGCCGAAACGGTTG
*
283350 TTCATCAACATATGATGAATTCCGTGAATTGCACACATAGTGTCGAAACGGTTG
1 TTCATCAACATATGATGAATTCCGTGAATTGCACACATAGTGCCGAAACGGTTG
* *
283404 TTCATCAACATATGATGAATTCCGTAAATTGTACACATAGTGCCGAAACGGTTG
1 TTCATCAACATATGATGAATTCCGTGAATTGCACACATAGTGCCGAAACGGTTG
283458 TTCATCAACATATGATGAATTCCGTGAATTG-AGCACATAGTGCC
1 TTCATCAACATATGATGAATTCCGTGAATTGCA-CACATAGTGCC
283502 CATTTGGTAA
Statistics
Matches: 139, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
53 1 0.01
54 138 0.99
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (54 bp):
TTCATCAACATATGATGAATTCCGTGAATTGCACACATAGTGCCGAAACGGTTG
Found at i:290312 original size:19 final size:19
Alignment explanation
Indices: 290272--290313 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
290262 ACATTTTTTC
**
290272 ATTTTAATAAAAACAATTA
1 ATTTTAATAAAAACAACAA
*
290291 ATTTTAATTAAAACAACAA
1 ATTTTAATAAAAACAACAA
290310 ATTT
1 ATTT
290314 ATGGTATGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (19 bp):
ATTTTAATAAAAACAACAA
Found at i:294472 original size:24 final size:24
Alignment explanation
Indices: 294445--294498 Score: 83
Period size: 24 Copynumber: 2.2 Consensus size: 24
294435 GTTCTTCGCA
*
294445 GTCCTTCGGGAT-AATTTCTATGTG
1 GTCCTTCGGGATAAATTT-TATGCG
294469 GTCCTTCGGGATAAATTTTATGCG
1 GTCCTTCGGGATAAATTTTATGCG
294493 GTCCTT
1 GTCCTT
294499 TAGGAAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 23 0.82
25 5 0.18
ACGTcount: A:0.17, C:0.19, G:0.24, T:0.41
Consensus pattern (24 bp):
GTCCTTCGGGATAAATTTTATGCG
Found at i:294508 original size:24 final size:25
Alignment explanation
Indices: 294457--294508 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 25
294447 CCTTCGGGAT
* * *
294457 AATTTCTATGTGGTCCTTCGGGATA
1 AATTTCTATGCGGTCCTTCAGGAAA
*
294482 AATTT-TATGCGGTCCTTTAGGAAA
1 AATTTCTATGCGGTCCTTCAGGAAA
294506 AAT
1 AAT
294509 CTATATGGCA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 18 0.78
25 5 0.22
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.38
Consensus pattern (25 bp):
AATTTCTATGCGGTCCTTCAGGAAA
Found at i:298774 original size:54 final size:54
Alignment explanation
Indices: 298711--299519 Score: 1086
Period size: 54 Copynumber: 15.0 Consensus size: 54
298701 TTACCAAATA
* * **
298711 GGCACTAAGTGTACAATTCACGGAATTCATCATATGTTGATGAATAACCACTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
298765 GGCACTAAGTGTGCAATTCATGGAATTCATCATATATTGATGAATAACAGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
*
298819 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTT
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* *
298873 GGCACTAAGCGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTT
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * **
298927 GGCACTAAGCGTGCAATTCACGAAATTCATCATATGTTGATGCATAATTGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
** * * *
298981 AACACTAATTGTGTAATTCACGAAATTCATCATATGTTGATGAATGACCGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
299035 GTCACTAATTGTGCAATTCATGAAATGT-ATCATATGTTTATGAATAACCGTTTC
1 GGCACTAAGTGTGCAATTCACGAAAT-TCATCATATGTTGATGAATAACCGTTTC
* * * * *
299089 AGCACTAATTGTGCAATTCACTAAATTCATCATAGGTTGATGAATAACCGTTTT
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
** *
299143 GGCACTAAGTGTAAAATTCACGGAATTCATCATATGTTGATGAATAACCG-TTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * *
299196 GACACTAAGTGTGTAATTCACGAAATTCATCATATGTTGATGAATAACCATTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* *
299250 GGCACTGAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAATCGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * *
299304 GGCACTGAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAATCGTTTT
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * * * *
299358 GGTACTAAGTGTGCATTTCACGAAATTCATCATATATTGATGAAAAACTGTTTA
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * *
299412 GGCACTAATTGTGCAAAGTT--CGAAATTCATCTTAAGTTGATGAATAACCGTTTC
1 GGCACTAAGTGTGC-AA-TTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
299466 GACACTAAGTGTGTAATTCACGGAATTCATCATATGCTGATGAATAACCGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
299520 ACAGAATTCA
Statistics
Matches: 667, Mismatches: 81, Indels: 14
0.88 0.11 0.02
Matches are distributed among these distances:
52 2 0.00
53 50 0.07
54 611 0.92
55 2 0.00
56 2 0.00
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (54 bp):
GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
Found at i:299001 original size:162 final size:162
Alignment explanation
Indices: 298711--300036 Score: 1209
Period size: 162 Copynumber: 8.4 Consensus size: 162
298701 TTACCAAATA
* * **
298711 GGCACTAAGTGTACAATTCACGGAATTCATCATATGTTGATGAATAACCACTTCGGCACTAAGTG
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* * * *
298776 TGCAATTCATGGAATTCATCATATATTGATGAATAACAGTTTCGGCACTAAGTGTGCAATTCACG
66 TGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACG
*
298841 AAATTCATCATATGTTGATGAATAACCGTTTT
131 AAATTCATCATATGTTGATGAATAACCGTTTC
* * *
298873 GGCACTAAGCGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTTGGCACTAAGCG
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* ** ** * *
298938 TGCAATTCACGAAATTCATCATATGTTGATGCATAATTGTTTCAACACTAATTGTGTAATTCACG
66 TGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACG
*
299003 AAATTCATCATATGTTGATGAATGACCGTTTC
131 AAATTCATCATATGTTGATGAATAACCGTTTC
* * * * * *
299035 GTCACTAATTGTGCAATTCATGAAATGT-ATCATATGTTTATGAATAACCGTTTCAGCACTAATT
1 GGCACTAAGTGTGCAATTCACGAAAT-TCATCATATGTTGATGAATAACCGTTTCGGCACTAAGT
* * * **
299099 GTGCAATTCACTAAATTCATCATAGGTTGATGAATAACCGTTTTGGCACTAAGTGTAAAATTCAC
65 GTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCAC
*
299164 GGAATTCATCATATGTTGATGAATAACCG-TTC
130 GAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
299196 GACACTAAGTGTGTAATTCACGAAATTCATCATATGTTGATGAATAACCATTTCGGCACTGAGTG
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* *
299261 TGCAATTCACGAAATTCATCATATGTTGATGAATAATCGTTTCGGCACTGAGTGTGCAATTCACG
66 TGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACG
* *
299326 AAATTCATCATATGTTGATGAATAATCGTTTT
131 AAATTCATCATATGTTGATGAATAACCGTTTC
* * * * * * *
299358 GGTACTAAGTGTGCATTTCACGAAATTCATCATATATTGATGAAAAACTGTTTAGGCACTAATTG
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* * * *
299423 TGCAAAGTT--CGAAATTCATCTTAAGTTGATGAATAACCGTTTCGACACTAAGTGTGTAATTCA
66 TGC-AA-TTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCA
* *
299486 CGGAATTCATCATATGCTGATGAATAACCGTTTC
129 CGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * * * * * * * * *
299520 -ACA-GAATTCAT-CATATGTTGATG-AA-T-A-AAAAT-TTCA-GCACTAA--G--T---CAAT
1 GGCACTAAGT-GTGCA-A--TTCACGAAATTCATCATATGTTGATG-AATAACCGTTTCGGCACT
* * * * ** *
299569 AA-T-T-C-A---AGGAATTTATCAT-ATGTTGATGAAT-AACT---GTTTTTGGCACTAAGTGT
61 AAGTGTGCAATTCACGAA-AT-TCATCAT-ATGTTG-ATGAA-TAACCGTTTCGGCACTAAGTGT
*
299622 GCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTC
121 GCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * * * *
299664 GACACTAA--ATGAAATTCACGAAATTCATCATATGTTGATGAATAATCTTTTCTGCACTAAGTG
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* * * * * *
299727 TGCAATTTACTG-AATTCATCATATGGTGATGAATAATCGTTTTGGCACTAATTGTGCAATTTAC
66 TGCAATTCAC-GAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCAC
*
299791 GGAATTCATCATATGTTGATGAATAACCGTTTC
130 GAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
299824 GGTACT--GTGT--AATTCACGGAATTCATTATATGTTGATGAATAACCGTTTAGGCACTAAGTG
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* * * * *
299885 TGTAAAGT-ACGGAATGCATCATATGATGATGAATAACCG--T--GCA--AA--GT---A--CA-
66 TG-CAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCAC
* *
299935 -AAATTCATCATATGTTGACGAATAACTGTTTC
130 GAAATTCATCATATGTTGATGAATAACCGTTTC
* * *
299967 GGCACTAAGTGTGCAAAGT-AC-AGAATTTATCATATGTTGATGAATAATCGTTTCGGCACTAAG
1 GGCACTAAGTGTGC-AATTCACGA-AATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAG
300030 TGTGCAA
64 TGTGCAA
300037 CCCAAAGAAT
Statistics
Matches: 958, Mismatches: 151, Indels: 126
0.78 0.12 0.10
Matches are distributed among these distances:
141 4 0.00
142 2 0.00
143 38 0.04
144 59 0.06
145 13 0.01
146 21 0.02
147 47 0.05
148 4 0.00
149 1 0.00
150 4 0.00
151 5 0.01
152 2 0.00
153 5 0.01
154 5 0.01
155 1 0.00
156 3 0.00
157 6 0.01
158 89 0.09
159 9 0.01
160 70 0.07
161 145 0.15
162 416 0.43
163 7 0.01
164 2 0.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.34
Consensus pattern (162 bp):
GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
TGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACG
AAATTCATCATATGTTGATGAATAACCGTTTC
Found at i:299555 original size:35 final size:35
Alignment explanation
Indices: 299482--299555 Score: 103
Period size: 35 Copynumber: 2.1 Consensus size: 35
299472 AAGTGTGTAA
* ***
299482 TTCACGGAATTCATCATATGCTGATGAATAACCGT
1 TTCACAGAATTCATCATATGCTGATGAATAAAAAT
*
299517 TTCACAGAATTCATCATATGTTGATGAATAAAAAT
1 TTCACAGAATTCATCATATGCTGATGAATAAAAAT
299552 TTCA
1 TTCA
299556 GCACTAAGTC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (35 bp):
TTCACAGAATTCATCATATGCTGATGAATAAAAAT
Found at i:299587 original size:89 final size:89
Alignment explanation
Indices: 299435--299607 Score: 222
Period size: 89 Copynumber: 1.9 Consensus size: 89
299425 CAAAGTTCGA
* *** *** *
299435 AATTCATCTTAAGTTGATGAATAACCGTTTCGACACTAAGTGTGTAATTCACGGAATTCATCATA
1 AATTCATCATAAGTTGATGAATAAAAATTTCGACACTAAGTCAATAATTCAAGGAATTCATCATA
299500 TGCTGATGAATAACCGTTTCACAG
66 TGCTGATGAATAACCGTTTCACAG
* *
299524 AATTCATCATATGTTGATGAATAAAAATTTC-AGCACTAAGTCAATAATTCAAGGAATTTATCAT
1 AATTCATCATAAGTTGATGAATAAAAATTTCGA-CACTAAGTCAATAATTCAAGGAATTCATCAT
* *
299588 ATGTTGATGAATAACTGTTT
65 ATGCTGATGAATAACCGTTT
299608 TTGGCACTAA
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
88 1 0.01
89 70 0.99
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (89 bp):
AATTCATCATAAGTTGATGAATAAAAATTTCGACACTAAGTCAATAATTCAAGGAATTCATCATA
TGCTGATGAATAACCGTTTCACAG
Found at i:299760 original size:54 final size:54
Alignment explanation
Indices: 299517--299924 Score: 443
Period size: 54 Copynumber: 7.6 Consensus size: 54
299507 GAATAACCGT
* *** * ****
299517 TTCACAGAATTCATCATATGTTGATGAATAAAAATTTCAGCACTAAGTCAATAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAA
* * * *
299571 TTCAAGGAATTTATCATATGTTGATGAATAACTGTTTTTGGCACTAAGTGTGCAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCG-TTTCGGCACTAAGTGTGCAA
* * *
299626 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGACACTAA--ATGAAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAA
* * * *
299678 TTCACGAAATTCATCATATGTTGATGAATAATCTTTTCTGCACTAAGTGTGCAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAA
* * * * * *
299732 TTTACTGAATTCATCATATGGTGATGAATAATCGTTTTGGCACTAATTGTGCAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAA
* *
299786 TTTACGGAATTCATCATATGTTGATGAATAACCGTTTCGGTACT--GTGT--AA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAA
* * *
299836 TTCACGGAATTCATTATATGTTGATGAATAACCGTTTAGGCACTAAGTGTGTAAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTG-CAA
* * *
299891 GT-ACGGAATGCATCATATGATGATGAATAACCGT
1 TTCACGGAATTCATCATATGTTGATGAATAACCGT
299925 GCAAAGTACA
Statistics
Matches: 298, Mismatches: 48, Indels: 16
0.82 0.13 0.04
Matches are distributed among these distances:
50 42 0.14
52 52 0.17
54 156 0.52
55 48 0.16
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (54 bp):
TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAA
Found at i:299872 original size:104 final size:105
Alignment explanation
Indices: 299517--300032 Score: 424
Period size: 104 Copynumber: 5.0 Consensus size: 105
299507 GAATAACCGT
* *** * * *
299517 TTCACAGAATTCATCATATGTTGATGAATAAAAATTTCA-GCACTAA-GTCAATAATTCAAGGAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTT-AGGCACTAATGT-GA-AATTTACGGAA
* * *
299580 TTTATCATATGTTGATGAATAACTGTTTTTGGCACTAAGTGTGCAA
63 TTCATCATATGTTGATGAATAACCG-TTTCGGCACT-AGTGT-CAA
* * * * *
299626 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGACACTAA-ATGAAATTCACGAAATTC
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTAGGCACTAATGTGAAATTTACGGAATTC
* * *
299690 ATCATATGTTGATGAATAATCTTTTCTGCACTAAGTGTGCAA
66 ATCATATGTTGATGAATAACCGTTTCGGCACT-AGTGT-CAA
* * * * * *
299732 TTTACTGAATTCATCATATGGTGATGAATAATCGTTTTGGCACTAATTGTGCAATTTACGGAATT
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTAGGCACTAA-TGTGAAATTTACGGAATT
*
299797 CATCATATGTTGATGAATAACCGTTTCGGTACT-GTGT-AA
65 CATCATATGTTGATGAATAACCGTTTCGGCACTAGTGTCAA
* *
299836 TTCACGGAATTCATTATATGTTGATGAATAACCGTTTAGGCACTAAGTGTGTAAA-GTACGGAAT
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTAGGCACTAA-TGTG-AAATTTACGGAAT
* * *
299900 GCATCATATGATGATGAATAACCG--T--GCA--A-AGT--A
64 TCATCATATGTTGATGAATAACCGTTTCGGCACTAGTGTCAA
* * * * * *
299933 --CA--AAATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAA-GTACAGAAT
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTAGGCACTAA-TGTG-AAATTTACGGAAT
* *
299993 TTATCATATGTTGATGAATAATCGTTTCGGCACTAAGTGT
64 TCATCATATGTTGATGAATAACCGTTTCGGCACT-AGTGT
300033 GCAACCCAAA
Statistics
Matches: 339, Mismatches: 55, Indels: 34
0.79 0.13 0.08
Matches are distributed among these distances:
93 71 0.21
95 3 0.01
97 4 0.01
98 2 0.01
100 3 0.01
101 2 0.01
102 1 0.00
104 76 0.22
105 2 0.01
106 62 0.18
107 30 0.09
108 43 0.13
109 40 0.12
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (105 bp):
TTCACGGAATTCATCATATGTTGATGAATAACCGTTTAGGCACTAATGTGAAATTTACGGAATTC
ATCATATGTTGATGAATAACCGTTTCGGCACTAGTGTCAA
Found at i:299915 original size:158 final size:160
Alignment explanation
Indices: 299583--299921 Score: 468
Period size: 158 Copynumber: 2.1 Consensus size: 160
299573 CAAGGAATTT
*
299583 ATCATATGTTGATGAATAACTGTTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGTT
1 ATCATATGATGATGAATAACTGTTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGTT
* *
299648 GATGAATAACCGTTTCGACACTAAATGAAATTCACGAAATTCATCATATGTTGATGAATAATCTT
66 GATGAATAACCGTTTCGACACT-AATGAAATTCACGAAATTCATCATATGTTGATGAATAACCGT
** ** * *
299713 TTCTGCACTAAGTGTGCAATTTACTGAATTC
130 TTAGGCACTAAGTGTGCAAAGTACGGAATGC
* * *
299744 ATCATATGGTGATGAATAA-TCG-TTTTGGCACTAATTGTGCAATTTACGGAATTCATCATATGT
1 ATCATATGATGATGAATAACT-GTTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGT
** * * * *
299807 TGATGAATAACCGTTTCGGTACT-GTGTAATTCACGGAATTCATTATATGTTGATGAATAACCGT
65 TGATGAATAACCGTTTCGACACTAATGAAATTCACGAAATTCATCATATGTTGATGAATAACCGT
*
299871 TTAGGCACTAAGTGTGTAAAGTACGGAATGC
130 TTAGGCACTAAGTGTGCAAAGTACGGAATGC
299902 ATCATATGATGATGAATAAC
1 ATCATATGATGATGAATAAC
299922 CGTGCAAAGT
Statistics
Matches: 157, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
158 77 0.49
160 61 0.39
161 19 0.12
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35
Consensus pattern (160 bp):
ATCATATGATGATGAATAACTGTTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGTT
GATGAATAACCGTTTCGACACTAATGAAATTCACGAAATTCATCATATGTTGATGAATAACCGTT
TAGGCACTAAGTGTGCAAAGTACGGAATGC
Found at i:299942 original size:412 final size:411
Alignment explanation
Indices: 299106--300036 Score: 1165
Period size: 412 Copynumber: 2.3 Consensus size: 411
299096 ATTGTGCAAT
* * * * * * *
299106 TCACTAAATTCATCATAGGTTGATGAATAACCGTTTTGGCACTAAGTGTAAAATTCACGGAATTC
1 TCACAAAATTCATCATATGTTGATGAATAACAGTTTCGGCACTAAGTGCAAAATTCAAGGAATTT
* * *
299171 ATCATATGTTGATGAATAACCG-TTCGACACTAAGTGTGTAATTCACGAAATTCATCATATGTTG
66 ATCATATGTTGATGAATAACTGTTTCGGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTG
* ** *
299235 ATGAATAACCATTTCGGCACTGAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAATCG
131 ATGAATAACCATTTCGACACTGAGAATGAAATTCACGAAATTCATCATATGTTGATGAATAATCG
* * *
299300 TTTCGGCACTGAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAATCGTTTTGGTACTA
196 TTTCGGCACTAAGTGTGCAATTCACGAAATTCATCATATGGTGATGAATAATCGTTTTGGCACTA
* *
299365 AGTGTGCATTTCACGAAATTCATCATATATTGATGAAAAACTGTTTAGGCACTAATTGTGCAAAG
261 AGTGTGCATTTCACGAAATTCATCATATATTGATGAAAAACCGTTTAGG--CTAACTGTGCAAAG
* * *
299430 TTCGAAATTCATCTTAAGTTGATGAATAACCGTTTCGACACTAAGTGTGTAATTCACGGAATTCA
324 TTCGAAATTCATCTTAAGTTGATGAATAACCGTTTAGACACTAAGTGTGTAAGTCACGGAATGCA
* *
299495 TCATATGCTGATGAATAACCGTT
389 TCATATGATGATGAATAACCGTG
* * * *
299518 TCACAGAATTCATCATATGTTGATGAATAAAAATTTCAGCACTAAGT-CAATAATTCAAGGAATT
1 TCACAAAATTCATCATATGTTGATGAATAACAGTTTCGGCACTAAGTGCAA-AATTCAAGGAATT
* *
299582 TATCATATGTTGATGAATAACTGTTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGT
65 TATCATATGTTGATGAATAACTG-TTTCGGCACTAAGTGTGCAATTCACGAAATTCATCATATGT
*
299647 TGATGAATAACCGTTTCGACACT-A-AATGAAATTCACGAAATTCATCATATGTTGATGAATAAT
129 TGATGAATAACCATTTCGACACTGAGAATGAAATTCACGAAATTCATCATATGTTGATGAATAAT
* * *
299710 CTTTTCTGCACTAAGTGTGCAATTTACTG-AATTCATCATATGGTGATGAATAATCGTTTTGGCA
194 CGTTTCGGCACTAAGTGTGCAATTCAC-GAAATTCATCATATGGTGATGAATAATCGTTTTGGCA
* * * * * *
299774 CTAATTGTGCAATTT-ACGGAATTCATCATATGTTGATGAATAACCGTTTCGG-T-ACTGTG-TA
258 CTAAGTGTGC-ATTTCACGAAATTCATCATATATTGATGAAAAACCGTTTAGGCTAACTGTGCAA
* * *
299835 A-TTCACGGAATTCAT-TATATGTTGATGAATAACCGTTTAGGCACTAAGTGTGTAAAGT-ACGG
322 AGTT--CGAAATTCATCT-TAAGTTGATGAATAACCGTTTAGACACTAAGTGTGT-AAGTCACGG
299897 AATGCATCATATGATGATGAATAACCGTG
383 AATGCATCATATGATGATGAATAACCGTG
* * * *
299926 -CAAAGTACAAAATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAAGTAC-A
1 TC-----ACAAAATTCATCATATGTTGATGAATAACAGTTTCGGCACTAA--GTGCAAAATTCAA
299989 -GAATTTATCATATGTTGATGAATAA-TCGTTTCGGCACTAAGTGTGCAA
59 GGAATTTATCATATGTTGATGAATAACT-GTTTCGGCACTAAGTGTGCAA
300037 CCCAAAGAAT
Statistics
Matches: 449, Mismatches: 52, Indels: 37
0.83 0.10 0.07
Matches are distributed among these distances:
406 2 0.00
407 4 0.01
408 77 0.17
409 4 0.01
411 22 0.05
412 268 0.60
413 7 0.02
414 62 0.14
415 3 0.01
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (411 bp):
TCACAAAATTCATCATATGTTGATGAATAACAGTTTCGGCACTAAGTGCAAAATTCAAGGAATTT
ATCATATGTTGATGAATAACTGTTTCGGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTG
ATGAATAACCATTTCGACACTGAGAATGAAATTCACGAAATTCATCATATGTTGATGAATAATCG
TTTCGGCACTAAGTGTGCAATTCACGAAATTCATCATATGGTGATGAATAATCGTTTTGGCACTA
AGTGTGCATTTCACGAAATTCATCATATATTGATGAAAAACCGTTTAGGCTAACTGTGCAAAGTT
CGAAATTCATCTTAAGTTGATGAATAACCGTTTAGACACTAAGTGTGTAAGTCACGGAATGCATC
ATATGATGATGAATAACCGTG
Found at i:300002 original size:93 final size:93
Alignment explanation
Indices: 299843--300013 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
299833 TAATTCACGG
* * * *
299843 AATTCATTATATGTTGATGAATAACCGTTTAGGCACTAAGTGTGTAAAGTACGGAATGCATCATA
1 AATTCATCATATGTTGACGAATAACCGTTTAGGCACTAAGTGTGCAAAGTACAGAATGCATCATA
299908 TGATGATGAATAACCGTGCAAAGTACAA
66 TGATGATGAATAACCGTGCAAAGTACAA
* * **
299936 AATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAAGTACAGAATTTATCATA
1 AATTCATCATATGTTGACGAATAACCGTTTAGGCACTAAGTGTGCAAAGTACAGAATGCATCATA
*
300001 TGTTGATGAATAA
66 TGATGATGAATAA
300014 TCGTTTCGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (93 bp):
AATTCATCATATGTTGACGAATAACCGTTTAGGCACTAAGTGTGCAAAGTACAGAATGCATCATA
TGATGATGAATAACCGTGCAAAGTACAA
Found at i:300005 original size:54 final size:54
Alignment explanation
Indices: 299923--300036 Score: 185
Period size: 54 Copynumber: 2.1 Consensus size: 54
299913 ATGAATAACC
299923 GTGCAAAGTACAAAATTCATCATATGTTGACGAATAA-CTGTTTCGGCACTAAGT
1 GTGCAAAGTACAAAATTCATCATATGTTGACGAATAATC-GTTTCGGCACTAAGT
* * *
299977 GTGCAAAGTACAGAATTTATCATATGTTGATGAATAATCGTTTCGGCACTAAGT
1 GTGCAAAGTACAAAATTCATCATATGTTGACGAATAATCGTTTCGGCACTAAGT
300031 GTGCAA
1 GTGCAA
300037 CCCAAAGAAT
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
54 55 0.98
55 1 0.02
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (54 bp):
GTGCAAAGTACAAAATTCATCATATGTTGACGAATAATCGTTTCGGCACTAAGT
Found at i:300046 original size:54 final size:54
Alignment explanation
Indices: 299936--300050 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
299926 CAAAGTACAA
** *
299936 AATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAAGTACAG
1 AATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAACCAAAG
* * *
299990 AATTTATCATATGTTGATGAATAA-TCGTTTCGGCACTAAGTGTGCAACCCAAAG
1 AATTCATCATATGTTGACGAATAACT-GTTTCGGCACTAAGTGTGCAAACCAAAG
300044 AATTCAT
1 AATTCAT
300051 AATGAGTTTA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
53 1 0.02
54 52 0.98
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (54 bp):
AATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAACCAAAG
Found at i:303546 original size:54 final size:54
Alignment explanation
Indices: 303483--303914 Score: 580
Period size: 54 Copynumber: 8.0 Consensus size: 54
303473 TTACCAAATA
* * **
303483 GGCACTAAGTGTACAATTCACGGAATTCATCATATGTTGATGAATAACCACTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
303537 GGCACTAAGTGTGCAATTCATGGAATTCATCATATATTGATGAATAACAGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* *
303591 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAATCGTTTT
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
*
303645 GGCACTAAGCGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
303699 GGCACTGATTGTGCAATTCACGAAATTCATCATATGTTGATGAATAATCGTTTT
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * * * *
303753 GGTACTAAGTGTGCATTTCACGAAATTCATCATATATTGATGAAAAACTGTTTA
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * *
303807 GGCACTAATTGTGCAAAGTT--CGAAATTCATCTTAAGTTGATGAATAACCGTTTC
1 GGCACTAAGTGTGC-AA-TTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
303861 GACACTAAGTGTGTAATTCACGGAATTCATCATATGCTGATGAATAACCGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
303915 ACAGAATTCA
Statistics
Matches: 329, Mismatches: 45, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
52 2 0.01
53 2 0.01
54 322 0.98
55 1 0.00
56 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (54 bp):
GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
Found at i:303762 original size:162 final size:161
Alignment explanation
Indices: 303481--304319 Score: 661
Period size: 162 Copynumber: 5.3 Consensus size: 161
303471 GATTACCAAA
* * **
303481 TAGGCACTAAGTGTACAATTCACGGAATTCATCATATGTTGATGAATAACCACTTCGGCACTAAG
1 TAGGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAG
* *
303546 TGTGCAATTCATGGAATTCATCATATATTGATGAATAACAGTTTCGGCACTAAGTGTGCAATTCA
66 TGTGCAATTCACGGAATTCATCATATGTTGATGAATAAC-GTTTCGGCACTAAGTGTGCAATTCA
* *
303611 CGAAATTCATCATATGTTGATGAATAA-TCGTT
130 CGAAATTCATCATATATTGATGAAAAACT-GTT
* * * *
303643 TTGGCACTAAGCGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTGAT
1 TAGGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAG
* * * *
303708 TGTGCAATTCACGAAATTCATCATATGTTGATGAATAATCGTTTTGGTACTAAGTGTGCATTTCA
66 TGTGCAATTCACGGAATTCATCATATGTTGATGAATAA-CGTTTCGGCACTAAGTGTGCAATTCA
303773 CGAAATTCATCATATATTGATGAAAAACTGTT
130 CGAAATTCATCATATATTGATGAAAAACTGTT
* * * *
303805 TAGGCACTAATTGTGCAAAGTT--CGAAATTCATCTTAAGTTGATGAATAACCGTTTCGACACTA
1 TAGGCACTAAGTGTGC-AA-TTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTA
* * * *
303868 AGTGTGTAATTCACGGAATTCATCATATGCTGATGAATAACCGTTTC-ACA-GAA-T-T-C-A-T
64 AGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAA-CGTTTCGGCACTAAGTGTGCAATT
* ** * * *** ** **
303926 CA-TATGTTGATGA-ATAAAAATTTCAGCAC---T
128 CACGAAATTCATCATATATTGA-TGAAAAACTGTT
* * * * * * * ** *
303956 AAGTCAATAA-T-T-C-A---AGGAATTTATCAT-ATGTTGATGAAT-AACT---GTTTTTGGCA
1 TAGGCACTAAGTGTGCAATTCACGAA-AT-TCATCAT-ATGTTG-ATGAA-TAACCGTTTCGGCA
* * *
304009 CTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGACACTAA--ATGAA
61 CTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAA-CGTTTCGGCACTAAGTGTGCA
* *
304072 ATTCACGAAATTCATCATATGTTGATGAATAATCT-TT
125 ATTCACGAAATTCATCATATATTGATGAA-AAACTGTT
** * * *
304109 TCTGCACTAAGTGTGCAATTCACTG-AATTCATCATATGGTGATGAATAATCGTTTTGGCACTAA
1 TAGGCACTAAGTGTGCAATTCAC-GAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAA
* *
304173 TTGTGCAATTTACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACT--GTGT--AATTC
65 GTGTGCAATTCACGGAATTCATCATATGTTGATGAATAA-CGTTTCGGCACTAAGTGTGCAATTC
* * * * *
304234 ACGGAATTCATTATATGTTGATGAATAACCGTT
129 ACGAAATTCATCATATATTGATGAAAAACTGTT
* * * * *
304267 TAGGCACTAAGTGTGTAAAGT-ACGGAATGCATCATATGATGATGAATAACCGT
1 TAGGCACTAAGTGTG-CAATTCACGAAATTCATCATATGTTGATGAATAACCGT
304320 GCAAAGTACA
Statistics
Matches: 534, Mismatches: 103, Indels: 84
0.74 0.14 0.12
Matches are distributed among these distances:
144 57 0.11
145 5 0.01
146 13 0.02
147 3 0.01
148 2 0.00
149 4 0.01
150 9 0.02
151 12 0.02
153 10 0.02
154 11 0.02
155 4 0.01
156 1 0.00
157 8 0.01
158 81 0.15
159 7 0.01
160 66 0.12
161 2 0.00
162 233 0.44
163 4 0.01
164 2 0.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.34
Consensus pattern (161 bp):
TAGGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAG
TGTGCAATTCACGGAATTCATCATATGTTGATGAATAACGTTTCGGCACTAAGTGTGCAATTCAC
GAAATTCATCATATATTGATGAAAAACTGTT
Found at i:303950 original size:35 final size:35
Alignment explanation
Indices: 303877--303950 Score: 103
Period size: 35 Copynumber: 2.1 Consensus size: 35
303867 AAGTGTGTAA
* ***
303877 TTCACGGAATTCATCATATGCTGATGAATAACCGT
1 TTCACAGAATTCATCATATGCTGATGAATAAAAAT
*
303912 TTCACAGAATTCATCATATGTTGATGAATAAAAAT
1 TTCACAGAATTCATCATATGCTGATGAATAAAAAT
303947 TTCA
1 TTCA
303951 GCACTAAGTC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (35 bp):
TTCACAGAATTCATCATATGCTGATGAATAAAAAT
Found at i:303982 original size:89 final size:89
Alignment explanation
Indices: 303830--304002 Score: 222
Period size: 89 Copynumber: 1.9 Consensus size: 89
303820 CAAAGTTCGA
* *** *** *
303830 AATTCATCTTAAGTTGATGAATAACCGTTTCGACACTAAGTGTGTAATTCACGGAATTCATCATA
1 AATTCATCATAAGTTGATGAATAAAAATTTCGACACTAAGTCAATAATTCAAGGAATTCATCATA
303895 TGCTGATGAATAACCGTTTCACAG
66 TGCTGATGAATAACCGTTTCACAG
* *
303919 AATTCATCATATGTTGATGAATAAAAATTTC-AGCACTAAGTCAATAATTCAAGGAATTTATCAT
1 AATTCATCATAAGTTGATGAATAAAAATTTCGA-CACTAAGTCAATAATTCAAGGAATTCATCAT
* *
303983 ATGTTGATGAATAACTGTTT
65 ATGCTGATGAATAACCGTTT
304003 TTGGCACTAA
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
88 1 0.01
89 70 0.99
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (89 bp):
AATTCATCATAAGTTGATGAATAAAAATTTCGACACTAAGTCAATAATTCAAGGAATTCATCATA
TGCTGATGAATAACCGTTTCACAG
Found at i:304310 original size:158 final size:160
Alignment explanation
Indices: 303919--304316 Score: 475
Period size: 158 Copynumber: 2.5 Consensus size: 160
303909 CGTTTCACAG
*** ** * * **
303919 AATTCATCATATGTTGATGAATAAAAATTTCA-GCACTAAGT-CAATAATTCAAGGAATTTATCA
1 AATTCATCATATGTTGATGAATAACCGTTT-AGGCACTAAGTGTGA-AAGTCACGGAATGCATCA
*
303982 TATGTTGATGAATAACTGTTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATG
64 TATGATGATGAATAACTGTTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATG
304047 AATAACCGTTTCGACACTAAATGAAATTCACGA
129 AATAACCGTTTCGACACT-AATGAAATTCACGA
* * ** * * * *
304080 AATTCATCATATGTTGATGAATAATCTTTTCTGCACTAAGTGTGCAATTCACTGAATTCATCATA
1 AATTCATCATATGTTGATGAATAACCGTTTAGGCACTAAGTGTGAAAGTCACGGAATGCATCATA
* * *
304145 TGGTGATGAATAA-TCG-TTTTGGCACTAATTGTGCAATTTACGGAATTCATCATATGTTGATGA
66 TGATGATGAATAACT-GTTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGA
* * * *
304208 ATAACCGTTTCGGCACT-GTGTAATTCACGG
130 ATAACCGTTTCGACACTAATGAAATTCACGA
*
304238 AATTCATTATATGTTGATGAATAACCGTTTAGGCACTAAGTGTGTAAAGT-ACGGAATGCATCAT
1 AATTCATCATATGTTGATGAATAACCGTTTAGGCACTAAGTGTG-AAAGTCACGGAATGCATCAT
304302 ATGATGATGAATAAC
65 ATGATGATGAATAAC
304317 CGTGCAAAGT
Statistics
Matches: 205, Mismatches: 27, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
158 74 0.36
159 3 0.01
160 62 0.30
161 66 0.32
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (160 bp):
AATTCATCATATGTTGATGAATAACCGTTTAGGCACTAAGTGTGAAAGTCACGGAATGCATCATA
TGATGATGAATAACTGTTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAA
TAACCGTTTCGACACTAATGAAATTCACGA
Found at i:304316 original size:54 final size:54
Alignment explanation
Indices: 303912--304428 Score: 470
Period size: 54 Copynumber: 9.9 Consensus size: 54
303902 GAATAACCGT
* *** * **
303912 TTCACAGAATTCATCATATGTTGATGAATAAAAATTTCAGCACTAAGT-CAATAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGA-AA
* * * * *
303966 TTCAAGGAATTTATCATATGTTGATGAATAACTGTTTTTGGCACTAAGTGTGCAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCG-TTTCGGCACTAAGTGTGAAA
* *
304021 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGACACTAA--ATGAAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGAAA
* * * * *
304073 TTCACGAAATTCATCATATGTTGATGAATAATCTTTTCTGCACTAAGTGTGCAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGAAA
* * * * * *
304127 TTCACTGAATTCATCATATGGTGATGAATAATCGTTTTGGCACTAATTGTGCAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGAAA
*
304181 TTTACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACT--GTGT--AA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGAAA
* *
304231 TTCACGGAATTCATTATATGTTGATGAATAACCGTTTAGGCACTAAGTGTGTAAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTG-AAA
* * * ***
304286 GT-ACGGAATGCATCATATGATGATGAATAACCG--T--GCA--AAGTACAAAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGAAA
* *
304333 TT--C---A----TCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTG-AAA
* * * *
304379 GT-ACAGAATTTATCATATGTTGATGAATAATCGTTTCGGCACTAAGTGTG
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTG
304429 CAACCCAAAG
Statistics
Matches: 380, Mismatches: 59, Indels: 48
0.78 0.12 0.10
Matches are distributed among these distances:
39 18 0.05
41 1 0.00
43 4 0.01
45 4 0.01
46 5 0.01
47 5 0.01
48 4 0.01
50 47 0.12
52 53 0.14
54 191 0.50
55 48 0.13
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (54 bp):
TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGAAA
Found at i:304397 original size:93 final size:93
Alignment explanation
Indices: 304238--304408 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
304228 TAATTCACGG
* * * *
304238 AATTCATTATATGTTGATGAATAACCGTTTAGGCACTAAGTGTGTAAAGTACGGAATGCATCATA
1 AATTCATCATATGTTGACGAATAACCGTTTAGGCACTAAGTGTGCAAAGTACAGAATGCATCATA
304303 TGATGATGAATAACCGTGCAAAGTACAA
66 TGATGATGAATAACCGTGCAAAGTACAA
* * **
304331 AATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAAGTACAGAATTTATCATA
1 AATTCATCATATGTTGACGAATAACCGTTTAGGCACTAAGTGTGCAAAGTACAGAATGCATCATA
*
304396 TGTTGATGAATAA
66 TGATGATGAATAA
304409 TCGTTTCGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (93 bp):
AATTCATCATATGTTGACGAATAACCGTTTAGGCACTAAGTGTGCAAAGTACAGAATGCATCATA
TGATGATGAATAACCGTGCAAAGTACAA
Found at i:304441 original size:54 final size:54
Alignment explanation
Indices: 304331--304445 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
304321 CAAAGTACAA
** *
304331 AATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAAGTACAG
1 AATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAACCAAAG
* * *
304385 AATTTATCATATGTTGATGAATAA-TCGTTTCGGCACTAAGTGTGCAACCCAAAG
1 AATTCATCATATGTTGACGAATAACT-GTTTCGGCACTAAGTGTGCAAACCAAAG
304439 AATTCAT
1 AATTCAT
304446 AATGAGTTTA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
53 1 0.02
54 52 0.98
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (54 bp):
AATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAACCAAAG
Found at i:307942 original size:54 final size:54
Alignment explanation
Indices: 307879--308310 Score: 589
Period size: 54 Copynumber: 8.0 Consensus size: 54
307869 TTACCAAATA
* * **
307879 GGCACTAAGTGTACAATTCACGGAATTCATCATATGTTGATGAATAACCACTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
307933 GGCACTAAGTGTGCAATTCATGGAATTCATCATATATTGATGAATAACAGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
*
307987 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTT
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
*
308041 GGCACTAAGCGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
308095 GGCACTGATTGTGCAATTCACGAAATTCATCATATGTTGATGAATAATCGTTTT
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * * * *
308149 GGTACTAAGTGTGCATTTCACGAAATTCATCATATATTGATGAAAAACTGTTTA
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * *
308203 GGCACTAATTGTGCAAAGTT--CGAAATTCATCTTAAGTTGATGAATAACCGTTTC
1 GGCACTAAGTGTGC-AA-TTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
308257 GACACTAAGTGTGTAATTCACGGAATTCATCATATGCTGATGAATAACCGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
308311 ACAGAATTCA
Statistics
Matches: 331, Mismatches: 43, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
52 2 0.01
53 2 0.01
54 324 0.98
55 1 0.00
56 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (54 bp):
GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
Found at i:308158 original size:162 final size:161
Alignment explanation
Indices: 307877--308826 Score: 681
Period size: 162 Copynumber: 6.1 Consensus size: 161
307867 GATTACCAAA
* * **
307877 TAGGCACTAAGTGTACAATTCACGGAATTCATCATATGTTGATGAATAACCACTTCGGCACTAAG
1 TAGGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAG
* *
307942 TGTGCAATTCATGGAATTCATCATATATTGATGAATAACAGTTTCGGCACTAAGTGTGCAATTCA
66 TGTGCAATTCACGGAATTCATCATATGTTGATGAATAAC-GTTTCGGCACTAAGTGTGCAATTCA
* *
308007 CGAAATTCATCATATGTTGATGAATAACCGTT
130 CGAAATTCATCATATATTGATGAAAAACCGTT
* * * *
308039 TTGGCACTAAGCGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTGAT
1 TAGGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAG
* * * *
308104 TGTGCAATTCACGAAATTCATCATATGTTGATGAATAATCGTTTTGGTACTAAGTGTGCATTTCA
66 TGTGCAATTCACGGAATTCATCATATGTTGATGAATAA-CGTTTCGGCACTAAGTGTGCAATTCA
*
308169 CGAAATTCATCATATATTGATGAAAAACTGTT
130 CGAAATTCATCATATATTGATGAAAAACCGTT
* * * *
308201 TAGGCACTAATTGTGCAAAGTT--CGAAATTCATCTTAAGTTGATGAATAACCGTTTCGACACTA
1 TAGGCACTAAGTGTGC-AA-TTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTA
* * * *
308264 AGTGTGTAATTCACGGAATTCATCATATGCTGATGAATAACCGTTTC-ACA-GAA-T-T-C-A-T
64 AGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAA-CGTTTCGGCACTAAGTGTGCAATT
* ** * * *** *** *
308322 CA-TATGTTGATGA-ATAAAAAT-TTCAGCAC--T
128 CACGAAATTCATCATATATTGATGAAAAAC-CGTT
* * * * * * * ** *
308352 AAGTCAATAA-T-T-C-A---AGGAATTTATCAT-ATGTTGATGAAT-AACT---GTTTTTGGCA
1 TAGGCACTAAGTGTGCAATTCACGAA-AT-TCATCAT-ATGTTG-ATGAA-TAACCGTTTCGGCA
* *
308405 CTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGACACTAA--ATG-A
61 CTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAA-CGTTTCGGCACTAAGTGTGCA
* * * *
308467 ATTCACGAAATTCATCATATGTTGATGAATAATCTTT
125 ATTCACGAAATTCATCATATATTGATGAAAAACCGTT
** * * *
308504 TCTGCACTAAGTGTGCAATTCACTG-AATTCATCATATGGTGATGAATAATCGTTTTGGCACTAA
1 TAGGCACTAAGTGTGCAATTCAC-GAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAA
* *
308568 TTGTGCAATTTACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACT--GTGT--AATTC
65 GTGTGCAATTCACGGAATTCATCATATGTTGATGAATAA-CGTTTCGGCACTAAGTGTGCAATTC
* * * *
308629 ACGGAATTCATTATATGTTGATGAATAACCGTT
129 ACGAAATTCATCATATATTGATGAAAAACCGTT
* * * * *
308662 TAGGCACTAAGTGTGTAAAGT-ACGGAATGCATCATATGATGATGAATAACCG--T--GCA--AA
1 TAGGCACTAAGTGTG-CAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAA
* * *
308720 --GT---A--CA--AAATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAAGT
65 GTGTGCAATTCACGGAATTCATCATATGTTGATGAATAAC-GTTTCGGCACTAAGTGTGC-AATT
* * * *
308776 -AC-AGAATTTATCATATGTTGATGAATAATCGTT
128 CACGA-AATTCATCATATATTGATGAAAAACCGTT
*
308809 TCGGCACTAAGTGTGCAA
1 TAGGCACTAAGTGTGCAA
308827 CCCAAAGAAT
Statistics
Matches: 630, Mismatches: 113, Indels: 106
0.74 0.13 0.12
Matches are distributed among these distances:
142 1 0.00
143 34 0.05
144 57 0.09
145 10 0.02
146 15 0.02
147 47 0.07
148 7 0.01
149 7 0.01
150 8 0.01
151 9 0.01
152 10 0.02
153 6 0.01
154 10 0.02
155 4 0.01
156 5 0.01
157 12 0.02
158 77 0.12
159 68 0.11
160 3 0.00
161 1 0.00
162 234 0.37
163 3 0.00
164 2 0.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (161 bp):
TAGGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAG
TGTGCAATTCACGGAATTCATCATATGTTGATGAATAACGTTTCGGCACTAAGTGTGCAATTCAC
GAAATTCATCATATATTGATGAAAAACCGTT
Found at i:308346 original size:35 final size:35
Alignment explanation
Indices: 308273--308346 Score: 103
Period size: 35 Copynumber: 2.1 Consensus size: 35
308263 AAGTGTGTAA
* ***
308273 TTCACGGAATTCATCATATGCTGATGAATAACCGT
1 TTCACAGAATTCATCATATGCTGATGAATAAAAAT
*
308308 TTCACAGAATTCATCATATGTTGATGAATAAAAAT
1 TTCACAGAATTCATCATATGCTGATGAATAAAAAT
308343 TTCA
1 TTCA
308347 GCACTAAGTC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (35 bp):
TTCACAGAATTCATCATATGCTGATGAATAAAAAT
Found at i:308378 original size:89 final size:89
Alignment explanation
Indices: 308226--308398 Score: 222
Period size: 89 Copynumber: 1.9 Consensus size: 89
308216 CAAAGTTCGA
* *** *** *
308226 AATTCATCTTAAGTTGATGAATAACCGTTTCGACACTAAGTGTGTAATTCACGGAATTCATCATA
1 AATTCATCATAAGTTGATGAATAAAAATTTCGACACTAAGTCAATAATTCAAGGAATTCATCATA
308291 TGCTGATGAATAACCGTTTCACAG
66 TGCTGATGAATAACCGTTTCACAG
* *
308315 AATTCATCATATGTTGATGAATAAAAATTTC-AGCACTAAGTCAATAATTCAAGGAATTTATCAT
1 AATTCATCATAAGTTGATGAATAAAAATTTCGA-CACTAAGTCAATAATTCAAGGAATTCATCAT
* *
308379 ATGTTGATGAATAACTGTTT
65 ATGCTGATGAATAACCGTTT
308399 TTGGCACTAA
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
88 1 0.01
89 70 0.99
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (89 bp):
AATTCATCATAAGTTGATGAATAAAAATTTCGACACTAAGTCAATAATTCAAGGAATTCATCATA
TGCTGATGAATAACCGTTTCACAG
Found at i:308513 original size:160 final size:158
Alignment explanation
Indices: 308315--308656 Score: 472
Period size: 160 Copynumber: 2.2 Consensus size: 158
308305 CGTTTCACAG
* *
308315 AATTCATCATATGTTGATGAATAAAAATTTCAGCACTAAGTCAATAATTCAAGGAATTTATCATA
1 AATTCATCATATGTTGATGAATAAAAATTTCAGCACTAAGTCAACAATTCAAGGAATTCATCATA
*
308380 TGTTGATGAATAA-CTGTTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGA
66 TGGTGATGAATAATC-G-TTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGA
308444 ATAACCGTTTCGACACTAAATG-AATTCACGA
129 ATAACCGTTTCGACACT--ATGTAATTCACGA
*** * *** **
308475 AATTCATCATATGTTGATGAATAATCTTTTCTGCACTAAGTGTGCAATTCACTGAATTCATCATA
1 AATTCATCATATGTTGATGAATAAAAATTTCAGCACTAAGTCAACAATTCAAGGAATTCATCATA
* *
308540 TGGTGATGAATAATCGTTTTGGCACTAATTGTGCAATTTACGGAATTCATCATATGTTGATGAAT
66 TGGTGATGAATAATCGTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAAT
* * *
308605 AACCGTTTCGGCACTGTGTAATTCACGG
131 AACCGTTTCGACACTATGTAATTCACGA
*
308633 AATTCATTATATGTTGATGAATAA
1 AATTCATCATATGTTGATGAATAA
308657 CCGTTTAGGC
Statistics
Matches: 162, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
157 2 0.01
158 31 0.19
159 61 0.38
160 67 0.41
161 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (158 bp):
AATTCATCATATGTTGATGAATAAAAATTTCAGCACTAAGTCAACAATTCAAGGAATTCATCATA
TGGTGATGAATAATCGTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAAT
AACCGTTTCGACACTATGTAATTCACGA
Found at i:308705 original size:54 final size:53
Alignment explanation
Indices: 308308--308714 Score: 450
Period size: 54 Copynumber: 7.7 Consensus size: 53
308298 GAATAACCGT
* *** * *
308308 TTCACAGAATTCATCATATGTTGATGAATAAAAATTTCAGCACTAAGTCAAT-AA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGT--GTGAA
* * * *
308362 TTCAAGGAATTTATCATATGTTGATGAATAACTGTTTTTGGCACTAAGTGTGCAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCG-TTTCGGCACTAAGTGTG-AA
* *
308417 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGACACTAA--ATGAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGAA
* * * *
308468 TTCACGAAATTCATCATATGTTGATGAATAATCTTTTCTGCACTAAGTGTGCAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTG-AA
* * * * *
308522 TTCACTGAATTCATCATATGGTGATGAATAATCGTTTTGGCACTAATTGTGCAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTG-AA
*
308576 TTTACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACT--GTGT-AA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGAA
* *
308626 TTCACGGAATTCATTATATGTTGATGAATAACCGTTTAGGCACTAAGTGTGTAAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTG--AA
* * *
308681 GT-ACGGAATGCATCATATGATGATGAATAACCGT
1 TTCACGGAATTCATCATATGTTGATGAATAACCGT
308715 GCAAAGTACA
Statistics
Matches: 301, Mismatches: 41, Indels: 22
0.83 0.11 0.06
Matches are distributed among these distances:
50 43 0.14
51 43 0.14
52 9 0.03
53 3 0.01
54 155 0.51
55 48 0.16
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (53 bp):
TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGAA
Found at i:308705 original size:158 final size:159
Alignment explanation
Indices: 308315--308711 Score: 473
Period size: 158 Copynumber: 2.5 Consensus size: 159
308305 CGTTTCACAG
*** ** * * **
308315 AATTCATCATATGTTGATGAATAAAAATTTCA-GCACTAAGT-CAATAATTCAAGGAATTTATCA
1 AATTCATCATATGTTGATGAATAACCGTTT-AGGCACTAAGTGTGA-AAGTCACGGAATGCATCA
*
308378 TATGTTGATGAATAACTGTTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATG
64 TATGATGATGAATAACTGTTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATG
308443 AATAACCGTTTCGACACTAAATGAATTCACGA
129 AATAACCGTTTCGACACT-AATGAATTCACGA
* * ** * * * *
308475 AATTCATCATATGTTGATGAATAATCTTTTCTGCACTAAGTGTGCAATTCACTGAATTCATCATA
1 AATTCATCATATGTTGATGAATAACCGTTTAGGCACTAAGTGTGAAAGTCACGGAATGCATCATA
* * *
308540 TGGTGATGAATAA-TCG-TTTTGGCACTAATTGTGCAATTTACGGAATTCATCATATGTTGATGA
66 TGATGATGAATAACT-GTTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGA
* * *
308603 ATAACCGTTTCGGCACT-GTGTAATTCACGG
130 ATAACCGTTTCGACACTAATG-AATTCACGA
*
308633 AATTCATTATATGTTGATGAATAACCGTTTAGGCACTAAGTGTGTAAAGT-ACGGAATGCATCAT
1 AATTCATCATATGTTGATGAATAACCGTTTAGGCACTAAGTGTG-AAAGTCACGGAATGCATCAT
308697 ATGATGATGAATAAC
65 ATGATGATGAATAAC
308712 CGTGCAAAGT
Statistics
Matches: 205, Mismatches: 26, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
157 2 0.01
158 72 0.35
159 65 0.32
160 66 0.32
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.35
Consensus pattern (159 bp):
AATTCATCATATGTTGATGAATAACCGTTTAGGCACTAAGTGTGAAAGTCACGGAATGCATCATA
TGATGATGAATAACTGTTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAA
TAACCGTTTCGACACTAATGAATTCACGA
Found at i:308792 original size:93 final size:93
Alignment explanation
Indices: 308633--308803 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
308623 TAATTCACGG
* * * *
308633 AATTCATTATATGTTGATGAATAACCGTTTAGGCACTAAGTGTGTAAAGTACGGAATGCATCATA
1 AATTCATCATATGTTGACGAATAACCGTTTAGGCACTAAGTGTGCAAAGTACAGAATGCATCATA
308698 TGATGATGAATAACCGTGCAAAGTACAA
66 TGATGATGAATAACCGTGCAAAGTACAA
* * **
308726 AATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAAGTACAGAATTTATCATA
1 AATTCATCATATGTTGACGAATAACCGTTTAGGCACTAAGTGTGCAAAGTACAGAATGCATCATA
*
308791 TGTTGATGAATAA
66 TGATGATGAATAA
308804 TCGTTTCGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (93 bp):
AATTCATCATATGTTGACGAATAACCGTTTAGGCACTAAGTGTGCAAAGTACAGAATGCATCATA
TGATGATGAATAACCGTGCAAAGTACAA
Found at i:308795 original size:54 final size:54
Alignment explanation
Indices: 308713--308826 Score: 185
Period size: 54 Copynumber: 2.1 Consensus size: 54
308703 ATGAATAACC
308713 GTGCAAAGTACAAAATTCATCATATGTTGACGAATAA-CTGTTTCGGCACTAAGT
1 GTGCAAAGTACAAAATTCATCATATGTTGACGAATAATC-GTTTCGGCACTAAGT
* * *
308767 GTGCAAAGTACAGAATTTATCATATGTTGATGAATAATCGTTTCGGCACTAAGT
1 GTGCAAAGTACAAAATTCATCATATGTTGACGAATAATCGTTTCGGCACTAAGT
308821 GTGCAA
1 GTGCAA
308827 CCCAAAGAAT
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
54 55 0.98
55 1 0.02
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (54 bp):
GTGCAAAGTACAAAATTCATCATATGTTGACGAATAATCGTTTCGGCACTAAGT
Found at i:308836 original size:54 final size:54
Alignment explanation
Indices: 308726--308840 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
308716 CAAAGTACAA
** *
308726 AATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAAGTACAG
1 AATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAACCAAAG
* * *
308780 AATTTATCATATGTTGATGAATAA-TCGTTTCGGCACTAAGTGTGCAACCCAAAG
1 AATTCATCATATGTTGACGAATAACT-GTTTCGGCACTAAGTGTGCAAACCAAAG
308834 AATTCAT
1 AATTCAT
308841 AATGAGTTTA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
53 1 0.02
54 52 0.98
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (54 bp):
AATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAACCAAAG
Found at i:312424 original size:54 final size:54
Alignment explanation
Indices: 312283--313090 Score: 1077
Period size: 54 Copynumber: 15.0 Consensus size: 54
312273 TTACCAAATA
* * **
312283 GGCACTAAGTGTACAATTCACGGAATTCATCATATGTTGATGAATAACCACTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
312337 GGCACTAA-TGTGCAATTCATGGAATTCATCATATATTGATGAATAACAGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
*
312390 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTT
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* *
312444 GGCACTAAGCGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTT
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * **
312498 GGCACTAAGCGTGCAATTCACGAAATTCATCATATGTTGATGCATAATTGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
** * * *
312552 AACACTAATTGTGTAATTCACGAAATTCATCATATGTTGATGAATGACCGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
312606 GTCACTAATTGTGCAATTCATGAAATGT-ATCATATGTTTATGAATAACCGTTTC
1 GGCACTAAGTGTGCAATTCACGAAAT-TCATCATATGTTGATGAATAACCGTTTC
* * * * *
312660 AGCACTAATTGTGCAATTCACTAAATTCATCATAGGTTGATGAATAACCGTTTT
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
** *
312714 GGCACTAAGTGTAAAATTCACGGAATTCATCATATGTTGATGAATAACCG-TTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * *
312767 GACACTAAGTGTGTAATTCACGAAATTCATCATATGTTGATGAATAACCATTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* *
312821 GGCACTGAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAATCGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * *
312875 GGCACTGAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAATCGTTTT
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * * * *
312929 GGTACTAAGTGTGCATTTCACGAAATTCATCATATATTGATGAAAAACTGTTTA
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * *
312983 GGCACTAATTGTGCAAAGTT--CGAAATTCATCTTAAGTTGATGAATAACCGTTTC
1 GGCACTAAGTGTGC-AA-TTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
313037 GACACTAAGTGTGTAATTCACGGAATTCATCATATGCTGATGAATAACCGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
313091 ACAGAATTCA
Statistics
Matches: 665, Mismatches: 81, Indels: 16
0.87 0.11 0.02
Matches are distributed among these distances:
52 2 0.00
53 97 0.15
54 562 0.85
55 2 0.00
56 2 0.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (54 bp):
GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
Found at i:312595 original size:162 final size:162
Alignment explanation
Indices: 312283--313607 Score: 1191
Period size: 162 Copynumber: 8.4 Consensus size: 162
312273 TTACCAAATA
* * **
312283 GGCACTAAGTGTACAATTCACGGAATTCATCATATGTTGATGAATAACCACTTCGGCACTAA-TG
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* * * *
312347 TGCAATTCATGGAATTCATCATATATTGATGAATAACAGTTTCGGCACTAAGTGTGCAATTCACG
66 TGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACG
*
312412 AAATTCATCATATGTTGATGAATAACCGTTTT
131 AAATTCATCATATGTTGATGAATAACCGTTTC
* * *
312444 GGCACTAAGCGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTTGGCACTAAGCG
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* ** ** * *
312509 TGCAATTCACGAAATTCATCATATGTTGATGCATAATTGTTTCAACACTAATTGTGTAATTCACG
66 TGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACG
*
312574 AAATTCATCATATGTTGATGAATGACCGTTTC
131 AAATTCATCATATGTTGATGAATAACCGTTTC
* * * * * *
312606 GTCACTAATTGTGCAATTCATGAAATGT-ATCATATGTTTATGAATAACCGTTTCAGCACTAATT
1 GGCACTAAGTGTGCAATTCACGAAAT-TCATCATATGTTGATGAATAACCGTTTCGGCACTAAGT
* * * **
312670 GTGCAATTCACTAAATTCATCATAGGTTGATGAATAACCGTTTTGGCACTAAGTGTAAAATTCAC
65 GTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCAC
*
312735 GGAATTCATCATATGTTGATGAATAACCG-TTC
130 GAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
312767 GACACTAAGTGTGTAATTCACGAAATTCATCATATGTTGATGAATAACCATTTCGGCACTGAGTG
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* *
312832 TGCAATTCACGAAATTCATCATATGTTGATGAATAATCGTTTCGGCACTGAGTGTGCAATTCACG
66 TGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACG
* *
312897 AAATTCATCATATGTTGATGAATAATCGTTTT
131 AAATTCATCATATGTTGATGAATAACCGTTTC
* * * * * * *
312929 GGTACTAAGTGTGCATTTCACGAAATTCATCATATATTGATGAAAAACTGTTTAGGCACTAATTG
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* * * *
312994 TGCAAAGTT--CGAAATTCATCTTAAGTTGATGAATAACCGTTTCGACACTAAGTGTGTAATTCA
66 TGC-AA-TTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCA
* *
313057 CGGAATTCATCATATGCTGATGAATAACCGTTTC
129 CGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * * * * * * * * *
313091 -ACA-GAATTCAT-CATATGTTGATG-AA-T-A-AAAAT-TTCA-GCACTAA--G--T---CAAT
1 GGCACTAAGT-GTGCA-A--TTCACGAAATTCATCATATGTTGATG-AATAACCGTTTCGGCACT
* * * * ** *
313140 AA-T-T-C-A---AGGAATTTATCAT-ATGTTGATGAAT-AACT---GTTTTTGGCACTAAGTGT
61 AAGTGTGCAATTCACGAA-AT-TCATCAT-ATGTTG-ATGAA-TAACCGTTTCGGCACTAAGTGT
*
313193 GCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTC
121 GCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * * * *
313235 GACACTAA--ATGAAATTCACGAAATTCATCATATGTTGATGAATAATCTTTTCTGCACTAAGTG
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* * * * * *
313298 TGCAATTTACTG-AATTCATCATATGGTGATGAATAATCGTTTTGGCACTAATTGTGCAATTTAC
66 TGCAATTCAC-GAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCAC
*
313362 GGAATTCATCATATGTTGATGAATAACCGTTTC
130 GAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
313395 GGTACT--GTGT--AATTCACGGAATTCATTATATGTTGATGAATAACCGTTTAGGCACTAAGTG
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* * * * *
313456 TGTAAAGT-ACGGAATGCATCATATGATGATGAATAACCG--T--GCA--AA--GT---A--CA-
66 TG-CAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCAC
* *
313506 -AAATTCATCATATGTTGACGAATAACTGTTTC
130 GAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
313538 GGCACTAAGTATGCAAAGT-AC-AGAATTTATCATATGTTGATGAATAATCGTTTCGGCACTAAG
1 GGCACTAAGTGTGC-AATTCACGA-AATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAG
313601 TGTGCAA
64 TGTGCAA
313608 CCCAAAGAAT
Statistics
Matches: 956, Mismatches: 152, Indels: 127
0.77 0.12 0.10
Matches are distributed among these distances:
141 4 0.00
142 2 0.00
143 38 0.04
144 59 0.06
145 12 0.01
146 21 0.02
147 47 0.05
148 4 0.00
149 1 0.00
150 4 0.00
151 5 0.01
152 2 0.00
153 5 0.01
154 5 0.01
155 1 0.00
156 3 0.00
157 6 0.01
158 89 0.09
159 9 0.01
160 70 0.07
161 201 0.21
162 359 0.38
163 7 0.01
164 2 0.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.34
Consensus pattern (162 bp):
GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
TGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACG
AAATTCATCATATGTTGATGAATAACCGTTTC
Found at i:313126 original size:35 final size:35
Alignment explanation
Indices: 313053--313126 Score: 103
Period size: 35 Copynumber: 2.1 Consensus size: 35
313043 AAGTGTGTAA
* ***
313053 TTCACGGAATTCATCATATGCTGATGAATAACCGT
1 TTCACAGAATTCATCATATGCTGATGAATAAAAAT
*
313088 TTCACAGAATTCATCATATGTTGATGAATAAAAAT
1 TTCACAGAATTCATCATATGCTGATGAATAAAAAT
313123 TTCA
1 TTCA
313127 GCACTAAGTC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (35 bp):
TTCACAGAATTCATCATATGCTGATGAATAAAAAT
Found at i:313158 original size:89 final size:89
Alignment explanation
Indices: 313006--313178 Score: 222
Period size: 89 Copynumber: 1.9 Consensus size: 89
312996 CAAAGTTCGA
* *** *** *
313006 AATTCATCTTAAGTTGATGAATAACCGTTTCGACACTAAGTGTGTAATTCACGGAATTCATCATA
1 AATTCATCATAAGTTGATGAATAAAAATTTCGACACTAAGTCAATAATTCAAGGAATTCATCATA
313071 TGCTGATGAATAACCGTTTCACAG
66 TGCTGATGAATAACCGTTTCACAG
* *
313095 AATTCATCATATGTTGATGAATAAAAATTTC-AGCACTAAGTCAATAATTCAAGGAATTTATCAT
1 AATTCATCATAAGTTGATGAATAAAAATTTCGA-CACTAAGTCAATAATTCAAGGAATTCATCAT
* *
313159 ATGTTGATGAATAACTGTTT
65 ATGCTGATGAATAACCGTTT
313179 TTGGCACTAA
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
88 1 0.01
89 70 0.99
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (89 bp):
AATTCATCATAAGTTGATGAATAAAAATTTCGACACTAAGTCAATAATTCAAGGAATTCATCATA
TGCTGATGAATAACCGTTTCACAG
Found at i:313331 original size:54 final size:54
Alignment explanation
Indices: 313088--313495 Score: 443
Period size: 54 Copynumber: 7.6 Consensus size: 54
313078 GAATAACCGT
* *** * ****
313088 TTCACAGAATTCATCATATGTTGATGAATAAAAATTTCAGCACTAAGTCAATAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAA
* * * *
313142 TTCAAGGAATTTATCATATGTTGATGAATAACTGTTTTTGGCACTAAGTGTGCAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCG-TTTCGGCACTAAGTGTGCAA
* * *
313197 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGACACTAA--ATGAAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAA
* * * *
313249 TTCACGAAATTCATCATATGTTGATGAATAATCTTTTCTGCACTAAGTGTGCAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAA
* * * * * *
313303 TTTACTGAATTCATCATATGGTGATGAATAATCGTTTTGGCACTAATTGTGCAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAA
* *
313357 TTTACGGAATTCATCATATGTTGATGAATAACCGTTTCGGTACT--GTGT--AA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAA
* * *
313407 TTCACGGAATTCATTATATGTTGATGAATAACCGTTTAGGCACTAAGTGTGTAAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTG-CAA
* * *
313462 GT-ACGGAATGCATCATATGATGATGAATAACCGT
1 TTCACGGAATTCATCATATGTTGATGAATAACCGT
313496 GCAAAGTACA
Statistics
Matches: 298, Mismatches: 48, Indels: 16
0.82 0.13 0.04
Matches are distributed among these distances:
50 42 0.14
52 52 0.17
54 156 0.52
55 48 0.16
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (54 bp):
TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAA
Found at i:313443 original size:104 final size:105
Alignment explanation
Indices: 313088--313603 Score: 415
Period size: 104 Copynumber: 5.0 Consensus size: 105
313078 GAATAACCGT
* *** * * *
313088 TTCACAGAATTCATCATATGTTGATGAATAAAAATTTCA-GCACTAA-GTCAATAATTCAAGGAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTT-AGGCACTAATGT-GA-AATTTACGGAA
* * *
313151 TTTATCATATGTTGATGAATAACTGTTTTTGGCACTAAGTGTGCAA
63 TTCATCATATGTTGATGAATAACCG-TTTCGGCACT-AGTGT-CAA
* * * * *
313197 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGACACTAA-ATGAAATTCACGAAATTC
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTAGGCACTAATGTGAAATTTACGGAATTC
* * *
313261 ATCATATGTTGATGAATAATCTTTTCTGCACTAAGTGTGCAA
66 ATCATATGTTGATGAATAACCGTTTCGGCACT-AGTGT-CAA
* * * * * *
313303 TTTACTGAATTCATCATATGGTGATGAATAATCGTTTTGGCACTAATTGTGCAATTTACGGAATT
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTAGGCACTAA-TGTGAAATTTACGGAATT
*
313368 CATCATATGTTGATGAATAACCGTTTCGGTACT-GTGT-AA
65 CATCATATGTTGATGAATAACCGTTTCGGCACTAGTGTCAA
* *
313407 TTCACGGAATTCATTATATGTTGATGAATAACCGTTTAGGCACTAAGTGTGTAAA-GTACGGAAT
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTAGGCACTAA-TGTG-AAATTTACGGAAT
* * *
313471 GCATCATATGATGATGAATAACCG--T--GCA--A-AGT--A
64 TCATCATATGTTGATGAATAACCGTTTCGGCACTAGTGTCAA
* * * * * * *
313504 --CA--AAATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTATGCAAA-GTACAGAAT
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTAGGCACTAA-TGTG-AAATTTACGGAAT
* *
313564 TTATCATATGTTGATGAATAATCGTTTCGGCACTAAGTGT
64 TCATCATATGTTGATGAATAACCGTTTCGGCACT-AGTGT
313604 GCAACCCAAA
Statistics
Matches: 338, Mismatches: 56, Indels: 34
0.79 0.13 0.08
Matches are distributed among these distances:
93 70 0.21
95 3 0.01
97 4 0.01
98 2 0.01
100 3 0.01
101 2 0.01
102 1 0.00
104 76 0.22
105 2 0.01
106 62 0.18
107 30 0.09
108 43 0.13
109 40 0.12
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (105 bp):
TTCACGGAATTCATCATATGTTGATGAATAACCGTTTAGGCACTAATGTGAAATTTACGGAATTC
ATCATATGTTGATGAATAACCGTTTCGGCACTAGTGTCAA
Found at i:313486 original size:158 final size:160
Alignment explanation
Indices: 313154--313492 Score: 468
Period size: 158 Copynumber: 2.1 Consensus size: 160
313144 CAAGGAATTT
*
313154 ATCATATGTTGATGAATAACTGTTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGTT
1 ATCATATGATGATGAATAACTGTTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGTT
* *
313219 GATGAATAACCGTTTCGACACTAAATGAAATTCACGAAATTCATCATATGTTGATGAATAATCTT
66 GATGAATAACCGTTTCGACACT-AATGAAATTCACGAAATTCATCATATGTTGATGAATAACCGT
** ** * *
313284 TTCTGCACTAAGTGTGCAATTTACTGAATTC
130 TTAGGCACTAAGTGTGCAAAGTACGGAATGC
* * *
313315 ATCATATGGTGATGAATAA-TCG-TTTTGGCACTAATTGTGCAATTTACGGAATTCATCATATGT
1 ATCATATGATGATGAATAACT-GTTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGT
** * * * *
313378 TGATGAATAACCGTTTCGGTACT-GTGTAATTCACGGAATTCATTATATGTTGATGAATAACCGT
65 TGATGAATAACCGTTTCGACACTAATGAAATTCACGAAATTCATCATATGTTGATGAATAACCGT
*
313442 TTAGGCACTAAGTGTGTAAAGTACGGAATGC
130 TTAGGCACTAAGTGTGCAAAGTACGGAATGC
313473 ATCATATGATGATGAATAAC
1 ATCATATGATGATGAATAAC
313493 CGTGCAAAGT
Statistics
Matches: 157, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
158 77 0.49
160 61 0.39
161 19 0.12
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35
Consensus pattern (160 bp):
ATCATATGATGATGAATAACTGTTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGTT
GATGAATAACCGTTTCGACACTAATGAAATTCACGAAATTCATCATATGTTGATGAATAACCGTT
TAGGCACTAAGTGTGCAAAGTACGGAATGC
Found at i:313573 original size:93 final size:93
Alignment explanation
Indices: 313414--313584 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
313404 TAATTCACGG
* * * * *
313414 AATTCATTATATGTTGATGAATAACCGTTTAGGCACTAAGTGTGTAAAGTACGGAATGCATCATA
1 AATTCATCATATGTTGACGAATAACCGTTTAGGCACTAAGTATGCAAAGTACAGAATGCATCATA
313479 TGATGATGAATAACCGTGCAAAGTACAA
66 TGATGATGAATAACCGTGCAAAGTACAA
* * **
313507 AATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTATGCAAAGTACAGAATTTATCATA
1 AATTCATCATATGTTGACGAATAACCGTTTAGGCACTAAGTATGCAAAGTACAGAATGCATCATA
*
313572 TGTTGATGAATAA
66 TGATGATGAATAA
313585 TCGTTTCGGC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (93 bp):
AATTCATCATATGTTGACGAATAACCGTTTAGGCACTAAGTATGCAAAGTACAGAATGCATCATA
TGATGATGAATAACCGTGCAAAGTACAA
Found at i:313577 original size:54 final size:54
Alignment explanation
Indices: 313495--313607 Score: 174
Period size: 54 Copynumber: 2.1 Consensus size: 54
313485 TGAATAACCG
313495 TGCAAAGTACAAAATTCATCATATGTTGACGAATAA-CTGTTTCGGCACTAAGTA
1 TGCAAAGTACAAAATTCATCATATGTTGACGAATAATC-GTTTCGGCACTAAGTA
* * * *
313549 TGCAAAGTACAGAATTTATCATATGTTGATGAATAATCGTTTCGGCACTAAGTG
1 TGCAAAGTACAAAATTCATCATATGTTGACGAATAATCGTTTCGGCACTAAGTA
313603 TGCAA
1 TGCAA
313608 CCCAAAGAAT
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 53 0.98
55 1 0.02
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (54 bp):
TGCAAAGTACAAAATTCATCATATGTTGACGAATAATCGTTTCGGCACTAAGTA
Found at i:313617 original size:54 final size:54
Alignment explanation
Indices: 313507--313621 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 54
313497 CAAAGTACAA
** *
313507 AATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTATGCAAAGTACAG
1 AATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTATGCAAACCAAAG
* * * *
313561 AATTTATCATATGTTGATGAATAA-TCGTTTCGGCACTAAGTGTGCAACCCAAAG
1 AATTCATCATATGTTGACGAATAACT-GTTTCGGCACTAAGTATGCAAACCAAAG
313615 AATTCAT
1 AATTCAT
313622 AATGAGTTTA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.02
54 51 0.98
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (54 bp):
AATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTATGCAAACCAAAG
Found at i:317122 original size:54 final size:54
Alignment explanation
Indices: 317059--317865 Score: 1086
Period size: 54 Copynumber: 15.0 Consensus size: 54
317049 TTACCAAATA
* * **
317059 GGCACTAAGTGTACAATTCACGGAATTCATCATATGTTGATGAATAACCACTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
317113 GGCACTAAGTGTGCAATTCATGGAATTCATCATATATTGATGAATAACAGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
*
317167 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTT
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* *
317221 GGCACTAAGCGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTT
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * **
317275 GGCACTAAGCGTGCAATTCACGAAATTCATCATATGTTGATGCATAATTGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
** * * *
317329 AACACTAATTGTGTAATTCACGAAATTCATCATATGTTGATGAATGACCGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
317383 GTCACTAATTGTGCAATTCATGAAATGT-ATCATATGTTTATGAATAACCGTTTC
1 GGCACTAAGTGTGCAATTCACGAAAT-TCATCATATGTTGATGAATAACCGTTTC
* * *
317437 AGCACTAATTGTGCAATTCACTAAATTCATCATATGTTGATGAATAACCGTTT-
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
** *
317490 GGCACTAAGTGTAAAATTCACGGAATTCATCATATGTTGATGAATAACCG-TTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * *
317543 GACACTAAGTGTGTAATTCACGAAATTCATCATATGTTGATGAATAACCATTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* *
317597 GGCACTGAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAATCGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * *
317651 GGCACTGAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAATCGTTTT
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * * * *
317705 GGTACTAAGTGTGCATTTCACGAAATTCATCATAT-ATGATGAAAAACTGTTTA
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * *
317758 GGCACTAATTGTGCAAAGTT--CGAAATTCATCTTAAGTTGATGAATAACCGTTTC
1 GGCACTAAGTGTGC-AA-TTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
317812 GACACTAAGTGTGTAATTCACGGAATTCATCATATGCTGATGAATAACCGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
317866 ACAGAATTCA
Statistics
Matches: 667, Mismatches: 77, Indels: 18
0.88 0.10 0.02
Matches are distributed among these distances:
52 4 0.01
53 130 0.19
54 530 0.79
55 3 0.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Consensus pattern (54 bp):
GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
Found at i:317349 original size:162 final size:162
Alignment explanation
Indices: 317059--318382 Score: 1209
Period size: 162 Copynumber: 8.4 Consensus size: 162
317049 TTACCAAATA
* * **
317059 GGCACTAAGTGTACAATTCACGGAATTCATCATATGTTGATGAATAACCACTTCGGCACTAAGTG
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* * * *
317124 TGCAATTCATGGAATTCATCATATATTGATGAATAACAGTTTCGGCACTAAGTGTGCAATTCACG
66 TGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACG
*
317189 AAATTCATCATATGTTGATGAATAACCGTTTT
131 AAATTCATCATATGTTGATGAATAACCGTTTC
* * *
317221 GGCACTAAGCGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTTGGCACTAAGCG
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* ** ** * *
317286 TGCAATTCACGAAATTCATCATATGTTGATGCATAATTGTTTCAACACTAATTGTGTAATTCACG
66 TGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACG
*
317351 AAATTCATCATATGTTGATGAATGACCGTTTC
131 AAATTCATCATATGTTGATGAATAACCGTTTC
* * * * * *
317383 GTCACTAATTGTGCAATTCATGAAATGT-ATCATATGTTTATGAATAACCGTTTCAGCACTAATT
1 GGCACTAAGTGTGCAATTCACGAAAT-TCATCATATGTTGATGAATAACCGTTTCGGCACTAAGT
* **
317447 GTGCAATTCACTAAATTCATCATATGTTGATGAATAACCGTTT-GGCACTAAGTGTAAAATTCAC
65 GTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCAC
*
317511 GGAATTCATCATATGTTGATGAATAACCG-TTC
130 GAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
317543 GACACTAAGTGTGTAATTCACGAAATTCATCATATGTTGATGAATAACCATTTCGGCACTGAGTG
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* *
317608 TGCAATTCACGAAATTCATCATATGTTGATGAATAATCGTTTCGGCACTGAGTGTGCAATTCACG
66 TGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACG
* *
317673 AAATTCATCATATGTTGATGAATAATCGTTTT
131 AAATTCATCATATGTTGATGAATAACCGTTTC
* * * * * * *
317705 GGTACTAAGTGTGCATTTCACGAAATTCATCATAT-ATGATGAAAAACTGTTTAGGCACTAATTG
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* * * *
317769 TGCAAAGTT--CGAAATTCATCTTAAGTTGATGAATAACCGTTTCGACACTAAGTGTGTAATTCA
66 TGC-AA-TTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCA
* *
317832 CGGAATTCATCATATGCTGATGAATAACCGTTTC
129 CGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * * * * * * * * *
317866 -ACA-GAATTCAT-CATATGTTGATG-AA-T-A-AAAAT-TTCA-GCACTAA--G--T---CAAT
1 GGCACTAAGT-GTGCA-A--TTCACGAAATTCATCATATGTTGATG-AATAACCGTTTCGGCACT
* * * * ** *
317915 AA-T-T-C-A---AGGAATTTATCAT-ATGTTGATGAAT-AACT---GTTTTTGGCACTAAGTGT
61 AAGTGTGCAATTCACGAA-AT-TCATCAT-ATGTTG-ATGAA-TAACCGTTTCGGCACTAAGTGT
*
317968 GCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTC
121 GCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * * * *
318010 GACACTAA--ATGAAATTCACGAAATTCATCATATGTTGATGAATAATCTTTTCTGCACTAAGTG
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* * * * * *
318073 TGCAATTTACTG-AATTCATCATATGGTGATGAATAATCGTTTTGGCACTAATTGTGCAATTTAC
66 TGCAATTCAC-GAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCAC
*
318137 GGAATTCATCATATGTTGATGAATAACCGTTTC
130 GAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
318170 GGTACT--GTGT--AATTCACGGAATTCATTATATGTTGATGAATAACCGTTTAGGCACTAAGTG
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* * * * *
318231 TGTAAAGT-ACGGAATGCATCATATGATGATGAATAACCG--T--GCA--AA--GT---A--CA-
66 TG-CAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCAC
* *
318281 -AAATTCATCATATGTTGACGAATAACTGTTTC
130 GAAATTCATCATATGTTGATGAATAACCGTTTC
* * *
318313 GGCACTAAGTGTGCAAAGT-AC-AGAATTTATCATATGTTGATGAATAATCGTTTCGGCACTAAG
1 GGCACTAAGTGTGC-AATTCACGA-AATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAG
318376 TGTGCAA
64 TGTGCAA
318383 CCCAAAGAAT
Statistics
Matches: 958, Mismatches: 148, Indels: 128
0.78 0.12 0.10
Matches are distributed among these distances:
141 4 0.00
142 2 0.00
143 38 0.04
144 59 0.06
145 13 0.01
146 21 0.02
147 47 0.05
148 4 0.00
149 1 0.00
150 4 0.00
151 5 0.01
152 2 0.00
153 5 0.01
154 5 0.01
155 1 0.00
156 3 0.00
157 6 0.01
158 91 0.09
159 13 0.01
160 163 0.17
161 194 0.20
162 274 0.29
163 3 0.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.34
Consensus pattern (162 bp):
GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
TGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACG
AAATTCATCATATGTTGATGAATAACCGTTTC
Found at i:317901 original size:35 final size:35
Alignment explanation
Indices: 317828--317901 Score: 103
Period size: 35 Copynumber: 2.1 Consensus size: 35
317818 AAGTGTGTAA
* ***
317828 TTCACGGAATTCATCATATGCTGATGAATAACCGT
1 TTCACAGAATTCATCATATGCTGATGAATAAAAAT
*
317863 TTCACAGAATTCATCATATGTTGATGAATAAAAAT
1 TTCACAGAATTCATCATATGCTGATGAATAAAAAT
317898 TTCA
1 TTCA
317902 GCACTAAGTC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (35 bp):
TTCACAGAATTCATCATATGCTGATGAATAAAAAT
Found at i:317933 original size:89 final size:89
Alignment explanation
Indices: 317781--317953 Score: 222
Period size: 89 Copynumber: 1.9 Consensus size: 89
317771 CAAAGTTCGA
* *** *** *
317781 AATTCATCTTAAGTTGATGAATAACCGTTTCGACACTAAGTGTGTAATTCACGGAATTCATCATA
1 AATTCATCATAAGTTGATGAATAAAAATTTCGACACTAAGTCAATAATTCAAGGAATTCATCATA
317846 TGCTGATGAATAACCGTTTCACAG
66 TGCTGATGAATAACCGTTTCACAG
* *
317870 AATTCATCATATGTTGATGAATAAAAATTTC-AGCACTAAGTCAATAATTCAAGGAATTTATCAT
1 AATTCATCATAAGTTGATGAATAAAAATTTCGA-CACTAAGTCAATAATTCAAGGAATTCATCAT
* *
317934 ATGTTGATGAATAACTGTTT
65 ATGCTGATGAATAACCGTTT
317954 TTGGCACTAA
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
88 1 0.01
89 70 0.99
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (89 bp):
AATTCATCATAAGTTGATGAATAAAAATTTCGACACTAAGTCAATAATTCAAGGAATTCATCATA
TGCTGATGAATAACCGTTTCACAG
Found at i:318070 original size:250 final size:249
Alignment explanation
Indices: 317620--318114 Score: 622
Period size: 250 Copynumber: 2.0 Consensus size: 249
317610 CAATTCACGA
*** * * *** *
317620 AATTCATCATATGTTGATGAATAATCGTTTCGGCACTGAGTGTGCAATTCACGAAATTCATCATA
1 AATTCATCATATGTTGATGAATAAAAATTTCAGCACTAAGTCAACAATTCAAGAAATTCATCATA
* *
317685 TGTTGATGAATAATCGTTTTGGTACTAAGTGTGCATTTCACGAAATTCATCATATATGATGAAAA
66 TGTTGATGAATAATCGTTTTGGCACTAAGTGTGCAATTCACGAAATTCATCATATATGATGAAAA
* * * *
317750 ACTGTTTAGGCACTAATTGTGCAAAGTTCGAAATTCATCTTAAGTTGATGAATAACCGTTTCGAC
131 ACCGTTTAGACACTAA-TATGCAAAGTTCGAAATTCATCATAAGTTGATGAATAACCGTTTCGAC
*
317815 ACTAAGTGTGTAATTCACGGAATTCATCATATGCTGATGAATAACCGTTTCACAG
195 ACTAAGTGTGCAATTCACGGAATTCATCATATGCTGATGAATAACCGTTTCACAG
* * *
317870 AATTCATCATATGTTGATGAATAAAAATTTCAGCACTAAGTCAATAATTCAAGGAATTTATCATA
1 AATTCATCATATGTTGATGAATAAAAATTTCAGCACTAAGTCAACAATTCAAGAAATTCATCATA
* *
317935 TGTTGATGAATAA-CTGTTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGA
66 TGTTGATGAATAATC-G-TTTTGGCACTAAGTGTGCAATTCACGAAATTCATCATAT-ATGATGA
* * * * *
317999 ATAACCGTTTCGACACTAA-ATG-AAA-TTCACGAAATTCATCATATGTTGATGAATAATCTTTT
128 AAAACCGTTTAGACACTAATATGCAAAGTT--CGAAATTCATCATAAGTTGATGAATAACCGTTT
* * * *
318061 CTG-CACTAAGTGTGCAATTTACTGAATTCATCATATGGTGATGAATAATCGTTT
191 C-GACACTAAGTGTGCAATTCACGGAATTCATCATATGCTGATGAATAACCGTTT
318115 TGGCACTAAT
Statistics
Matches: 209, Mismatches: 30, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
248 2 0.01
249 4 0.02
250 145 0.69
251 37 0.18
252 21 0.10
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.35
Consensus pattern (249 bp):
AATTCATCATATGTTGATGAATAAAAATTTCAGCACTAAGTCAACAATTCAAGAAATTCATCATA
TGTTGATGAATAATCGTTTTGGCACTAAGTGTGCAATTCACGAAATTCATCATATATGATGAAAA
ACCGTTTAGACACTAATATGCAAAGTTCGAAATTCATCATAAGTTGATGAATAACCGTTTCGACA
CTAAGTGTGCAATTCACGGAATTCATCATATGCTGATGAATAACCGTTTCACAG
Found at i:318106 original size:54 final size:54
Alignment explanation
Indices: 317863--318270 Score: 443
Period size: 54 Copynumber: 7.6 Consensus size: 54
317853 GAATAACCGT
* *** * ****
317863 TTCACAGAATTCATCATATGTTGATGAATAAAAATTTCAGCACTAAGTCAATAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAA
* * * *
317917 TTCAAGGAATTTATCATATGTTGATGAATAACTGTTTTTGGCACTAAGTGTGCAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCG-TTTCGGCACTAAGTGTGCAA
* * *
317972 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGACACTAA--ATGAAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAA
* * * *
318024 TTCACGAAATTCATCATATGTTGATGAATAATCTTTTCTGCACTAAGTGTGCAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAA
* * * * * *
318078 TTTACTGAATTCATCATATGGTGATGAATAATCGTTTTGGCACTAATTGTGCAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAA
* *
318132 TTTACGGAATTCATCATATGTTGATGAATAACCGTTTCGGTACT--GTGT--AA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAA
* * *
318182 TTCACGGAATTCATTATATGTTGATGAATAACCGTTTAGGCACTAAGTGTGTAAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTG-CAA
* * *
318237 GT-ACGGAATGCATCATATGATGATGAATAACCGT
1 TTCACGGAATTCATCATATGTTGATGAATAACCGT
318271 GCAAAGTACA
Statistics
Matches: 298, Mismatches: 48, Indels: 16
0.82 0.13 0.04
Matches are distributed among these distances:
50 42 0.14
52 52 0.17
54 156 0.52
55 48 0.16
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (54 bp):
TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAA
Found at i:318218 original size:104 final size:105
Alignment explanation
Indices: 317863--318378 Score: 424
Period size: 104 Copynumber: 5.0 Consensus size: 105
317853 GAATAACCGT
* *** * * *
317863 TTCACAGAATTCATCATATGTTGATGAATAAAAATTTCA-GCACTAA-GTCAATAATTCAAGGAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTT-AGGCACTAATGT-GA-AATTTACGGAA
* * *
317926 TTTATCATATGTTGATGAATAACTGTTTTTGGCACTAAGTGTGCAA
63 TTCATCATATGTTGATGAATAACCG-TTTCGGCACT-AGTGT-CAA
* * * * *
317972 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGACACTAA-ATGAAATTCACGAAATTC
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTAGGCACTAATGTGAAATTTACGGAATTC
* * *
318036 ATCATATGTTGATGAATAATCTTTTCTGCACTAAGTGTGCAA
66 ATCATATGTTGATGAATAACCGTTTCGGCACT-AGTGT-CAA
* * * * * *
318078 TTTACTGAATTCATCATATGGTGATGAATAATCGTTTTGGCACTAATTGTGCAATTTACGGAATT
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTAGGCACTAA-TGTGAAATTTACGGAATT
*
318143 CATCATATGTTGATGAATAACCGTTTCGGTACT-GTGT-AA
65 CATCATATGTTGATGAATAACCGTTTCGGCACTAGTGTCAA
* *
318182 TTCACGGAATTCATTATATGTTGATGAATAACCGTTTAGGCACTAAGTGTGTAAA-GTACGGAAT
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTAGGCACTAA-TGTG-AAATTTACGGAAT
* * *
318246 GCATCATATGATGATGAATAACCG--T--GCA--A-AGT--A
64 TCATCATATGTTGATGAATAACCGTTTCGGCACTAGTGTCAA
* * * * * *
318279 --CA--AAATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAA-GTACAGAAT
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTAGGCACTAA-TGTG-AAATTTACGGAAT
* *
318339 TTATCATATGTTGATGAATAATCGTTTCGGCACTAAGTGT
64 TCATCATATGTTGATGAATAACCGTTTCGGCACT-AGTGT
318379 GCAACCCAAA
Statistics
Matches: 339, Mismatches: 55, Indels: 34
0.79 0.13 0.08
Matches are distributed among these distances:
93 71 0.21
95 3 0.01
97 4 0.01
98 2 0.01
100 3 0.01
101 2 0.01
102 1 0.00
104 76 0.22
105 2 0.01
106 62 0.18
107 30 0.09
108 43 0.13
109 40 0.12
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (105 bp):
TTCACGGAATTCATCATATGTTGATGAATAACCGTTTAGGCACTAATGTGAAATTTACGGAATTC
ATCATATGTTGATGAATAACCGTTTCGGCACTAGTGTCAA
Found at i:318225 original size:158 final size:160
Alignment explanation
Indices: 317922--318267 Score: 473
Period size: 158 Copynumber: 2.2 Consensus size: 160
317912 AATAATTCAA
* *
317922 GGAATTTATCATATGTTGATGAATAACTGTTTTTGGCACTAAGTGTGCAATTCACGGAATTCATC
1 GGAATTCATCATATGATGATGAATAACTGTTTTTGGCACTAAGTGTGCAATTCACGGAATTCATC
317987 ATATGTTGATGAATAACCGTTTCGACACTAAATGAAATTCACGAAATTCATCATATGTTGATGAA
66 ATATGTTGATGAATAACCGTTTCGACACT-AATGAAATTCACGAAATTCATCATATGTTGATGAA
* * ** **
318052 TAATCTTTTCTGCACTAAGTGTGCAATTTAC
130 TAACCGTTTAGGCACTAAGTGTGCAAAGTAC
* * * *
318083 TGAATTCATCATATGGTGATGAATAA-TCG-TTTTGGCACTAATTGTGCAATTTACGGAATTCAT
1 GGAATTCATCATATGATGATGAATAACT-GTTTTTGGCACTAAGTGTGCAATTCACGGAATTCAT
** * * * *
318146 CATATGTTGATGAATAACCGTTTCGGTACT-GTGTAATTCACGGAATTCATTATATGTTGATGAA
65 CATATGTTGATGAATAACCGTTTCGACACTAATGAAATTCACGAAATTCATCATATGTTGATGAA
*
318210 TAACCGTTTAGGCACTAAGTGTGTAAAGTAC
130 TAACCGTTTAGGCACTAAGTGTGCAAAGTAC
*
318241 GGAATGCATCATATGATGATGAATAAC
1 GGAATTCATCATATGATGATGAATAAC
318268 CGTGCAAAGT
Statistics
Matches: 162, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
158 77 0.48
160 61 0.38
161 24 0.15
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35
Consensus pattern (160 bp):
GGAATTCATCATATGATGATGAATAACTGTTTTTGGCACTAAGTGTGCAATTCACGGAATTCATC
ATATGTTGATGAATAACCGTTTCGACACTAATGAAATTCACGAAATTCATCATATGTTGATGAAT
AACCGTTTAGGCACTAAGTGTGCAAAGTAC
Found at i:318348 original size:93 final size:93
Alignment explanation
Indices: 318189--318359 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
318179 TAATTCACGG
* * * *
318189 AATTCATTATATGTTGATGAATAACCGTTTAGGCACTAAGTGTGTAAAGTACGGAATGCATCATA
1 AATTCATCATATGTTGACGAATAACCGTTTAGGCACTAAGTGTGCAAAGTACAGAATGCATCATA
318254 TGATGATGAATAACCGTGCAAAGTACAA
66 TGATGATGAATAACCGTGCAAAGTACAA
* * **
318282 AATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAAGTACAGAATTTATCATA
1 AATTCATCATATGTTGACGAATAACCGTTTAGGCACTAAGTGTGCAAAGTACAGAATGCATCATA
*
318347 TGTTGATGAATAA
66 TGATGATGAATAA
318360 TCGTTTCGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (93 bp):
AATTCATCATATGTTGACGAATAACCGTTTAGGCACTAAGTGTGCAAAGTACAGAATGCATCATA
TGATGATGAATAACCGTGCAAAGTACAA
Found at i:318351 original size:54 final size:54
Alignment explanation
Indices: 318269--318382 Score: 185
Period size: 54 Copynumber: 2.1 Consensus size: 54
318259 ATGAATAACC
318269 GTGCAAAGTACAAAATTCATCATATGTTGACGAATAA-CTGTTTCGGCACTAAGT
1 GTGCAAAGTACAAAATTCATCATATGTTGACGAATAATC-GTTTCGGCACTAAGT
* * *
318323 GTGCAAAGTACAGAATTTATCATATGTTGATGAATAATCGTTTCGGCACTAAGT
1 GTGCAAAGTACAAAATTCATCATATGTTGACGAATAATCGTTTCGGCACTAAGT
318377 GTGCAA
1 GTGCAA
318383 CCCAAAGAAT
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
54 55 0.98
55 1 0.02
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (54 bp):
GTGCAAAGTACAAAATTCATCATATGTTGACGAATAATCGTTTCGGCACTAAGT
Found at i:318392 original size:54 final size:54
Alignment explanation
Indices: 318282--318396 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
318272 CAAAGTACAA
** *
318282 AATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAAGTACAG
1 AATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAACCAAAG
* * *
318336 AATTTATCATATGTTGATGAATAA-TCGTTTCGGCACTAAGTGTGCAACCCAAAG
1 AATTCATCATATGTTGACGAATAACT-GTTTCGGCACTAAGTGTGCAAACCAAAG
318390 AATTCAT
1 AATTCAT
318397 AATGAGTTTA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
53 1 0.02
54 52 0.98
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (54 bp):
AATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAACCAAAG
Found at i:318395 original size:411 final size:407
Alignment explanation
Indices: 317454--318427 Score: 1118
Period size: 411 Copynumber: 2.4 Consensus size: 407
317444 ATTGTGCAAT
* * *
317454 TCACTAAATTCATCATATGTTGATGAATAACCGTTT-GGCACTAAGTGT-AAAATTCACGGAATT
1 TCACAAAATTCATCATATGTTGATGAATAACAGTTTCGGCACTAAGTGTCAAAA-T-ACAGAATT
* * * *
317517 CATCATATGTTGATGAATAACCG-TTCGACACTAAGTGTGTAATTC-ACGAAATTCATCATATGT
64 TATCATATGTTGATGAATAA-CGTTTCGGCACTAAGTGTGCAATTCAAAG-AATTCATCATATGT
* * ** *
317580 TGATGAATAACCATTTCGGCACTGAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAAT
127 TGATGAATAACCGTTTCGACACT-AGAATGAAATTCACGAAATTCATCATATGTTGATGAATAAT
* * *
317645 CGTTTCGGCACTGAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAATCGTTTTGGTAC
191 CGTTTCGGCACTAAGTGTGCAATTCACGAAATTCATCATATGGTGATGAATAATCGTTTTGGCAC
* *
317710 TAAGTGTGCATTTCACGAAATTCATCATATATGATGAAAAACTGTTTAGGCACTAATTGTGCAAA
256 TAAGTGTGCATTTCACGAAATTCATCATATATGATGAAAAACCGTTTAGG--CTAACTGTGCAAA
* * *
317775 GTTCGAAATTCATCTTAAGTTGATGAATAACCGTTTCGACACTAAGTGTGTAATTCACGGAATTC
319 GTTCGAAATTCATCTTAAGTTGATGAATAACCGTTTAGACACTAAGTGTGTAAGTCACGGAATGC
* *
317840 ATCATATGCTGATGAATAACCGTT
384 ATCATATGATGATGAATAACCGTG
* * * * *
317864 TCACAGAATTCATCATATGTTGATGAATAAAAATTTCAGCACTAA--GTCAATAATTCAAGGAAT
1 TCACAAAATTCATCATATGTTGATGAATAACAGTTTCGGCACTAAGTGTCAA-AATAC-A-GAAT
* **
317927 TTATCATATGTTGATGAATAACTGTTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATG
63 TTATCATATGTTGATGAATAAC-G-TTTCGGCACTAAGTGTGCAATTCAAAGAATTCATCATATG
317992 TTGATGAATAACCGTTTCGACACTA-AATGAAATTCACGAAATTCATCATATGTTGATGAATAAT
126 TTGATGAATAACCGTTTCGACACTAGAATGAAATTCACGAAATTCATCATATGTTGATGAATAAT
* * *
318056 CTTTTCTGCACTAAGTGTGCAATTTACTG-AATTCATCATATGGTGATGAATAATCGTTTTGGCA
191 CGTTTCGGCACTAAGTGTGCAATTCAC-GAAATTCATCATATGGTGATGAATAATCGTTTTGGCA
* * * * * *
318120 CTAATTGTGCAATTT-ACGGAATTCATCATATGTTGATGAATAACCGTTTCGG-T-ACTGTG-TA
255 CTAAGTGTGC-ATTTCACGAAATTCATCATAT-ATGATGAAAAACCGTTTAGGCTAACTGTGCAA
* * *
318181 A-TTCACGGAATTCAT-TATATGTTGATGAATAACCGTTTAGGCACTAAGTGTGTAAAGT-ACGG
318 AGTT--CGAAATTCATCT-TAAGTTGATGAATAACCGTTTAGACACTAAGTGTGT-AAGTCACGG
318243 AATGCATCATATGATGATGAATAACCGTG
379 AATGCATCATATGATGATGAATAACCGTG
* * *
318272 -CAAAGTACAAAATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAAGTACAG
1 TC-----ACAAAATTCATCATATGTTGATGAATAACAGTTTCGGCACTAAGTGT-CAAAATACAG
** *
318336 AATTTATCATATGTTGATGAATAATCGTTTCGGCACTAAGTGTGCAACCCAAAGAATTCATAATG
60 AATTTATCATATGTTGATGAATAA-CGTTTCGGCACTAAGTGTGCAATTCAAAGAATTCATCAT-
* * * *
318401 A-GTTTATGAATGACCGTATAGACACTA
123 ATGTTGATGAATAACCGTTTCGACACTA
318428 CGTGTGCATC
Statistics
Matches: 479, Mismatches: 59, Indels: 51
0.81 0.10 0.09
Matches are distributed among these distances:
406 2 0.00
407 4 0.01
408 77 0.16
409 7 0.01
410 35 0.07
411 203 0.42
412 86 0.18
413 56 0.12
414 6 0.01
415 3 0.01
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33
Consensus pattern (407 bp):
TCACAAAATTCATCATATGTTGATGAATAACAGTTTCGGCACTAAGTGTCAAAATACAGAATTTA
TCATATGTTGATGAATAACGTTTCGGCACTAAGTGTGCAATTCAAAGAATTCATCATATGTTGAT
GAATAACCGTTTCGACACTAGAATGAAATTCACGAAATTCATCATATGTTGATGAATAATCGTTT
CGGCACTAAGTGTGCAATTCACGAAATTCATCATATGGTGATGAATAATCGTTTTGGCACTAAGT
GTGCATTTCACGAAATTCATCATATATGATGAAAAACCGTTTAGGCTAACTGTGCAAAGTTCGAA
ATTCATCTTAAGTTGATGAATAACCGTTTAGACACTAAGTGTGTAAGTCACGGAATGCATCATAT
GATGATGAATAACCGTG
Found at i:321883 original size:54 final size:54
Alignment explanation
Indices: 321820--322625 Score: 1084
Period size: 54 Copynumber: 15.0 Consensus size: 54
321810 TTACCAAATA
* * **
321820 GGCACTAAGTGTACAATTCACGGAATTCATCATATGTTGATGAATAACCACTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
321874 GGCACTAAGTGTGCAATTCATGGAATTCATCATATATTGATGAATAACAGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
*
321928 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTT
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* *
321982 GGCACTAAGCGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTT
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * *
322036 GGCACTAAGCGTGCAATTCACGAAATTCATCATATGTTGATGCATAA-TGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
** * * *
322089 AACACTAATTGTGTAATTCACGAAATTCATCATATGTTGATGAATGACCGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
322143 GTCACTAATTGTGCAATTCATGAAATGT-ATCATATGTTTATGAATAACCGTTTC
1 GGCACTAAGTGTGCAATTCACGAAAT-TCATCATATGTTGATGAATAACCGTTTC
* * * * *
322197 AGCACTAATTGTGCAATTCACTAAATTCATCATAGGTTGATGAATAACCGTTTT
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
** *
322251 GGCACTAAGTGTAAAATTCACGGAATTCATCATATGTTGATGAATAACCG-TTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * *
322304 GACACTAAGTGTGTAATTCACGAAATTCATCATATGTTGATGAATAACCATTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* *
322358 GGCACTGAGTGTGCAATTCACGAAATTCATCATATGTTGATGAAT-ATCGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * *
322411 GGCACTGAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAATCGTTTT
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * * * *
322465 GGTACTAAGTGTGCATTTCACGAAATTCATCATATATTGATGAAAAACTGTTTA
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * *
322519 GGCACTAATTGTGCAAGTT--CGAAATTCATCTTAAGTTGATGAATAACCGTTTC
1 GGCACTAAGTGTGCAA-TTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
322572 GACACTAAGTGTGTAATTCACGGAATTCATCATATGCTGATGAATAACCGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
322626 ACAGAATTCA
Statistics
Matches: 665, Mismatches: 79, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
52 2 0.00
53 184 0.28
54 476 0.72
55 3 0.00
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (54 bp):
GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
Found at i:322139 original size:107 final size:108
Alignment explanation
Indices: 321820--322625 Score: 1084
Period size: 107 Copynumber: 7.5 Consensus size: 108
321810 TTACCAAATA
* * **
321820 GGCACTAAGTGTACAATTCACGGAATTCATCATATGTTGATGAATAACCACTTCGGCACTAAGTG
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* * * *
321885 TGCAATTCATGGAATTCATCATATATTGATGAATAACAGTTTC
66 TGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* *
321928 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTTGGCACTAAGCG
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
*
321993 TGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTT
66 TGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * ** *
322036 GGCACTAAGCGTGCAATTCACGAAATTCATCATATGTTGATGCATAA-TGTTTCAACACTAATTG
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* *
322100 TGTAATTCACGAAATTCATCATATGTTGATGAATGACCGTTTC
66 TGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * * * *
322143 GTCACTAATTGTGCAATTCATGAAATGT-ATCATATGTTTATGAATAACCGTTTCAGCACTAATT
1 GGCACTAAGTGTGCAATTCACGAAAT-TCATCATATGTTGATGAATAACCGTTTCGGCACTAAGT
* * *
322207 GTGCAATTCACTAAATTCATCATAGGTTGATGAATAACCGTTTT
65 GTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
** * *
322251 GGCACTAAGTGTAAAATTCACGGAATTCATCATATGTTGATGAATAACCG-TTCGACACTAAGTG
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* *
322315 TGTAATTCACGAAATTCATCATATGTTGATGAATAACCATTTC
66 TGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * *
322358 GGCACTGAGTGTGCAATTCACGAAATTCATCATATGTTGATGAAT-ATCGTTTCGGCACTGAGTG
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* *
322422 TGCAATTCACGAAATTCATCATATGTTGATGAATAATCGTTTT
66 TGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * * * * *
322465 GGTACTAAGTGTGCATTTCACGAAATTCATCATATATTGATGAAAAACTGTTTAGGCACTAATTG
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* *
322530 TGCAAGTT--CGAAATTCATCTTAAGTTGATGAATAACCGTTTC
66 TGCAA-TTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
322572 GACACTAAGTGTGTAATTCACGGAATTCATCATATGCTGATGAATAACCGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
322626 ACAGAATTCA
Statistics
Matches: 607, Mismatches: 85, Indels: 13
0.86 0.12 0.02
Matches are distributed among these distances:
106 3 0.00
107 346 0.57
108 256 0.42
109 2 0.00
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (108 bp):
GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
TGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
Found at i:322179 original size:161 final size:162
Alignment explanation
Indices: 321822--322625 Score: 1073
Period size: 161 Copynumber: 5.0 Consensus size: 162
321812 ACCAAATAGG
* * **
321822 CACTAAGTGTACAATTCACGGAATTCATCATATGTTGATGAATAACCACTTCGGCACTAAGTGTG
1 CACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTG
* * * *
321887 CAATTCATGGAATTCATCATATATTGATGAATAACAGTTTCGGCACTAAGTGTGCAATTCACGAA
66 CAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGAA
* *
321952 ATTCATCATATGTTGATGAATAACCGTTTTGG
131 ATTCATCATATGTTGATGAATAACCGTTTCGT
* * *
321984 CACTAAGCGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTTGGCACTAAGCGTG
1 CACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTG
* * ** * *
322049 CAATTCACGAAATTCATCATATGTTGATGCATAA-TGTTTCAACACTAATTGTGTAATTCACGAA
66 CAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGAA
*
322113 ATTCATCATATGTTGATGAATGACCGTTTCGT
131 ATTCATCATATGTTGATGAATAACCGTTTCGT
* * * * *
322145 CACTAATTGTGCAATTCATGAAATGT-ATCATATGTTTATGAATAACCGTTTCAGCACTAATTGT
1 CACTAAGTGTGCAATTCACGAAAT-TCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGT
* * * ** *
322209 GCAATTCACTAAATTCATCATAGGTTGATGAATAACCGTTTTGGCACTAAGTGTAAAATTCACGG
65 GCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGA
*
322274 AATTCATCATATGTTGATGAATAACCG-TTCGA
130 AATTCATCATATGTTGATGAATAACCGTTTCGT
* * *
322306 CACTAAGTGTGTAATTCACGAAATTCATCATATGTTGATGAATAACCATTTCGGCACTGAGTGTG
1 CACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTG
* *
322371 CAATTCACGAAATTCATCATATGTTGATGAAT-ATCGTTTCGGCACTGAGTGTGCAATTCACGAA
66 CAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGAA
* *
322435 ATTCATCATATGTTGATGAATAATCGTTTTGGT
131 ATTCATCATATGTTGATGAATAACCG-TTTCGT
* * * * * *
322468 -ACTAAGTGTGCATTTCACGAAATTCATCATATATTGATGAAAAACTGTTTAGGCACTAATTGTG
1 CACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTG
* * * * *
322532 CAAGTT--CGAAATTCATCTTAAGTTGATGAATAACCGTTTCGACACTAAGTGTGTAATTCACGG
66 CAA-TTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGA
*
322595 AATTCATCATATGCTGATGAATAACCGTTTC
130 AATTCATCATATGTTGATGAATAACCGTTTC
322626 ACAGAATTCA
Statistics
Matches: 557, Mismatches: 78, Indels: 16
0.86 0.12 0.02
Matches are distributed among these distances:
160 78 0.14
161 338 0.61
162 141 0.25
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (162 bp):
CACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTG
CAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAATTCACGAA
ATTCATCATATGTTGATGAATAACCGTTTCGT
Found at i:322661 original size:35 final size:35
Alignment explanation
Indices: 322588--322661 Score: 103
Period size: 35 Copynumber: 2.1 Consensus size: 35
322578 AAGTGTGTAA
* ***
322588 TTCACGGAATTCATCATATGCTGATGAATAACCGT
1 TTCACAGAATTCATCATATGCTGATGAATAAAAAT
*
322623 TTCACAGAATTCATCATATGTTGATGAATAAAAAT
1 TTCACAGAATTCATCATATGCTGATGAATAAAAAT
322658 TTCA
1 TTCA
322662 GCACTAAGTC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (35 bp):
TTCACAGAATTCATCATATGCTGATGAATAAAAAT
Found at i:322703 original size:88 final size:89
Alignment explanation
Indices: 322541--322712 Score: 222
Period size: 88 Copynumber: 1.9 Consensus size: 89
322531 GCAAGTTCGA
* *** ** *
322541 AATTCATCTTAAGTTGATGAATAACCGTTTCGACACTAAGTGTGTAATTCACGGAATTCATCATA
1 AATTCATCATAAGTTGATGAATAAAAATTTCGACACTAAGTGCATAATTCAAGGAATTCATCATA
322606 TGCTGATGAATAACCGTTTCACAG
66 TGCTGATGAATAACCGTTTCACAG
* *
322630 AATTCATCATATGTTGATGAATAAAAATTTC-AGCACTAAGT-CATAATTCAAGGAATTTATCAT
1 AATTCATCATAAGTTGATGAATAAAAATTTCGA-CACTAAGTGCATAATTCAAGGAATTCATCAT
* *
322693 ATGTTGATGAATAACTGTTT
65 ATGCTGATGAATAACCGTTT
322713 TTGGCACTAA
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
88 37 0.52
89 34 0.48
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (89 bp):
AATTCATCATAAGTTGATGAATAAAAATTTCGACACTAAGTGCATAATTCAAGGAATTCATCATA
TGCTGATGAATAACCGTTTCACAG
Found at i:322829 original size:249 final size:247
Alignment explanation
Indices: 322381--322873 Score: 618
Period size: 249 Copynumber: 2.0 Consensus size: 247
322371 CAATTCACGA
*** * * * *
322381 AATTCATCATATGTTGATGAATATCGTTTCGGCACTGAGTGTGCAATTCACGAAATTCATCATAT
1 AATTCATCATATGTTGATGAATAAAATTTCAGCACTAAGTAT-CAATTCAAGAAATTCATCATAT
* *
322446 GTTGATGAATAATCGTTTTGGTACTAAGTGTGCATTTCACGAAATTCATCATATATTGATGAAAA
65 GTTGATGAATAATCGTTTTGGCACTAAGTGTGCAATTCACGAAATTCATCATATATTGATGAAAA
* * * * *
322511 ACTGTTTAGGCACTAATTGTGCAAGTTCGAAATTCATCTTAAGTTGATGAATAACCGTTTCGACA
130 ACCGTTTAGACACTAA-TATGCAAATTCGAAATTCATCATAAGTTGATGAATAACCGTTTCGACA
*
322576 CTAAGTGTGTAATTCACGGAATTCATCATATGCTGATGAATAACCGTTTCACAG
194 CTAAGTGTGCAATTCACGGAATTCATCATATGCTGATGAATAACCGTTTCACAG
* *
322630 AATTCATCATATGTTGATGAATAAAAATTTCAGCACTAAGTCAT-AATTCAAGGAATTTATCATA
1 AATTCATCATATGTTGATGAAT-AAAATTTCAGCACTAAGT-ATCAATTCAAGAAATTCATCATA
* *
322694 TGTTGATGAATAA-CTGTTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGA
64 TGTTGATGAATAATC-G-TTTTGGCACTAAGTGTGCAATTCACGAAATTCATCATATATTGATGA
* * * * *
322758 ATAACCGTTTCGACACTAA-ATG-AAATTCACGAAATTCATCATATGTTGATGAATAATCTTTTC
127 AAAACCGTTTAGACACTAATATGCAAATT--CGAAATTCATCATAAGTTGATGAATAACCGTTTC
* * * *
322821 TG-CACTAAGTGTGCAATTTACTGAATTCATCATATGGTGATGAATAATCGTTT
190 -GACACTAAGTGTGCAATTCACGGAATTCATCATATGCTGATGAATAACCGTTT
322874 GGCACTAATT
Statistics
Matches: 209, Mismatches: 28, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
247 4 0.02
248 3 0.01
249 129 0.62
250 72 0.34
251 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (247 bp):
AATTCATCATATGTTGATGAATAAAATTTCAGCACTAAGTATCAATTCAAGAAATTCATCATATG
TTGATGAATAATCGTTTTGGCACTAAGTGTGCAATTCACGAAATTCATCATATATTGATGAAAAA
CCGTTTAGACACTAATATGCAAATTCGAAATTCATCATAAGTTGATGAATAACCGTTTCGACACT
AAGTGTGCAATTCACGGAATTCATCATATGCTGATGAATAACCGTTTCACAG
Found at i:322865 original size:54 final size:54
Alignment explanation
Indices: 322623--323028 Score: 436
Period size: 54 Copynumber: 7.6 Consensus size: 54
322613 GAATAACCGT
* *** * *
322623 TTCACAGAATTCATCATATGTTGATGAATAAAAATTTCAGCACTAAGTCAT--AA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGT-GTGCAA
* * * *
322676 TTCAAGGAATTTATCATATGTTGATGAATAACTGTTTTTGGCACTAAGTGTGCAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCG-TTTCGGCACTAAGTGTGCAA
* * *
322731 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGACACTAA--ATGAAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAA
* * * *
322783 TTCACGAAATTCATCATATGTTGATGAATAATCTTTTCTGCACTAAGTGTGCAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAA
* * * * *
322837 TTTACTGAATTCATCATATGGTGATGAATAATCGTTT-GGCACTAATTGTGCAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAA
* *
322890 TTTACGGAATTCATCATATGTTGATGAATAACCGTTTCGGTACT--GTGT--AA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAA
* * *
322940 TTCACGGAATTCATTATATGTTGATGAATAACCGTTTAGGCACTAAGTGTGTAAA
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTG-CAA
* * * *
322995 GT-ACAGAATGCATCATATGATGATGAATAACCGT
1 TTCACGGAATTCATCATATGTTGATGAATAACCGT
323029 GCAAAGTACA
Statistics
Matches: 298, Mismatches: 44, Indels: 21
0.82 0.12 0.06
Matches are distributed among these distances:
50 42 0.14
52 52 0.17
53 77 0.26
54 91 0.31
55 36 0.12
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.35
Consensus pattern (54 bp):
TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTGTGCAA
Found at i:322919 original size:107 final size:106
Alignment explanation
Indices: 322623--323140 Score: 420
Period size: 107 Copynumber: 5.0 Consensus size: 106
322613 GAATAACCGT
* *** * * *
322623 TTCACAGAATTCATCATATGTTGATGAATAAAAATTTCA-GCACTAA-GTCATAATTCAAGGAAT
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTT-AGGCACTAATGTGA-AATTTACGGAAT
* *
322686 TTATCATATGTTGATGAATAACTGTTTTTGGCACTAAGTGTGCAA
64 TCATCATATGTTGATGAATAACT-TTTCT-GCACTAAGTGTGCAA
* * * * *
322731 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGACACTAA-ATGAAATTCACGAAATTC
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTAGGCACTAATGTGAAATTTACGGAATTC
322795 ATCATATGTTGATGAATAATCTTTTCTGCACTAAGTGTGCAA
66 ATCATATGTTGATGAATAA-CTTTTCTGCACTAAGTGTGCAA
* * * * *
322837 TTTACTGAATTCATCATATGGTGATGAATAATCGTTT-GGCACTAATTGTGCAATTTACGGAATT
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTAGGCACTAA-TGTGAAATTTACGGAATT
* * *
322901 CATCATATGTTGATGAATAACCGTTTCGGTACT--GTGT--AA
65 CATCATATGTTGATGAATAA-CTTTTCTGCACTAAGTGTGCAA
* * *
322940 TTCACGGAATTCATTATATGTTGATGAATAACCGTTTAGGCACTAAGTGTGTAAA-GTACAGAAT
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTAGGCACTAA-TGTG-AAATTTACGGAAT
* *
323004 GCATCATATGATGATGAATAAC----CGTGCA--AA--GT---A
64 TCATCATATGTTGATGAATAACTTTTC-TGCACTAAGTGTGCAA
* * * * * *
323037 --CA--AAATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAA-GTACAGAAT
1 TTCACGGAATTCATCATATGTTGATGAATAACCGTTTAGGCACTAA-TGTG-AAATTTACGGAAT
* * *
323097 TTATCATATGTTGATGAATAATCGTTTCGGCACTAAGTGTGCAA
64 TCATCATATGTTGATGAATAA-CTTTTCTGCACTAAGTGTGCAA
323141 CCCAAAGAAT
Statistics
Matches: 341, Mismatches: 48, Indels: 46
0.78 0.11 0.11
Matches are distributed among these distances:
93 70 0.21
94 1 0.00
95 2 0.01
97 4 0.01
98 3 0.01
99 3 0.01
100 2 0.01
101 2 0.01
103 35 0.10
104 39 0.11
105 13 0.04
106 48 0.14
107 76 0.22
108 43 0.13
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (106 bp):
TTCACGGAATTCATCATATGTTGATGAATAACCGTTTAGGCACTAATGTGAAATTTACGGAATTC
ATCATATGTTGATGAATAACTTTTCTGCACTAAGTGTGCAA
Found at i:323019 original size:157 final size:159
Alignment explanation
Indices: 322688--323025 Score: 457
Period size: 157 Copynumber: 2.1 Consensus size: 159
322678 CAAGGAATTT
*
322688 ATCATATGTTGATGAATAACTGTTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGTT
1 ATCATATGATGATGAATAACTG-TTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGTT
* *
322753 GATGAATAACCGTTTCGACACTAAATGAAATTCACGAAATTCATCATATGTTGATGAATAATCTT
65 GATGAATAACCGTTTCGACACT-AATGAAATTCACGAAATTCATCATATGTTGATGAATAACCGT
** ** * *
322818 TTCTGCACTAAGTGTGCAATTTACTGAATTC
129 TTAGGCACTAAGTGTGCAAAGTACAGAATGC
* * *
322849 ATCATATGGTGATGAATAA-TCG-TTTGGCACTAATTGTGCAATTTACGGAATTCATCATATGTT
1 ATCATATGATGATGAATAACT-GTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGTT
** * * * *
322912 GATGAATAACCGTTTCGGTACT-GTGTAATTCACGGAATTCATTATATGTTGATGAATAACCGTT
65 GATGAATAACCGTTTCGACACTAATGAAATTCACGAAATTCATCATATGTTGATGAATAACCGTT
*
322976 TAGGCACTAAGTGTGTAAAGTACAGAATGC
130 TAGGCACTAAGTGTGCAAAGTACAGAATGC
323006 ATCATATGATGATGAATAAC
1 ATCATATGATGATGAATAAC
323026 CGTGCAAAGT
Statistics
Matches: 156, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
157 77 0.49
159 59 0.38
160 1 0.01
161 19 0.12
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (159 bp):
ATCATATGATGATGAATAACTGTTTTGGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTG
ATGAATAACCGTTTCGACACTAATGAAATTCACGAAATTCATCATATGTTGATGAATAACCGTTT
AGGCACTAAGTGTGCAAAGTACAGAATGC
Found at i:323077 original size:356 final size:351
Alignment explanation
Indices: 321950--323132 Score: 1015
Period size: 356 Copynumber: 3.3 Consensus size: 351
321940 GCAATTCACG
* * * *
321950 AAATTCATCATATGTTGATGAATAACCGTTTTGGCACTAAGCGTGCAATTCACGAAATTCATCAT
1 AAATTCATCATATGTTGATGAATAACTGTTTCGGCACTAAGTGTGCAATTCACGGAATTCATCAT
* * * * *
322015 ATGTTGATGAATAACCGTTTTGGCACTAAGCGTGCAATTCACGAAATTCATCATATGTTGATGCA
66 ATGTTGATGAATAATCGTTTCGGCACTAA--ATGAAATTCACGAAATTCATCATATGTTGATGAA
*** * * * ** * *
322080 TAAT-GTTTCAACACTAATTGTGTAATTCACGAAATTCATCATAT-GTTGATGAATGACCGTTTC
129 TAATCGTTTTGGCACTAAGTGTGCATTTCACGAAATTCATCATATAG-TGATGAAAAACTGTTTA
* * * *
322143 GTCACTAATTGTGCAA-TTCATGAAATGT-ATCATATGTTTATGAATAACCGTTTCAGCACTAAT
193 GGCACTAATTGTGCAAGTTC--GAAAT-TCATCATAAGTTGATGAATAACCGTTTC-G-ACTAAC
* ** * *
322206 TGTGCAATTCACTAAATTCATCATAGGTTGATGAATAACCGTTTTGGCACTAAGTGTAAAATTCA
253 TGTGTAATTCACGGAATTCATCATATGCTGATGAATAACCG-TTT--CAC--A--G---AATT--
* *** * ** *
322271 CGGAATTCATCATATGTTGATGAATAACCGT-TC-GACACTAAGTGTGTAATTCACG
306 C---A-TCAT-A-A-GTAGATGAATAAAAATATCAG-CAATAAGT-CATAA-T-ACA
** * *
322326 AAATTCATCATATGTTGATGAATAACCATTTCGGCACTGAGTGTGCAATTCACGAAATTCATCAT
1 AAATTCATCATATGTTGATGAATAACTGTTTCGGCACTAAGTGTGCAATTCACGGAATTCATCAT
** *
322391 ATGTTGATGAAT-ATCGTTTCGGCACTGAGTGTGCAATTCACGAAATTCATCATATGTTGATGAA
66 ATGTTGATGAATAATCGTTTCGGCACT-A-AATGAAATTCACGAAATTCATCATATGTTGATGAA
* *
322455 TAATCGTTTTGGTACTAAGTGTGCATTTCACGAAATTCATCATATATTGATGAAAAACTGTTTAG
129 TAATCGTTTTGGCACTAAGTGTGCATTTCACGAAATTCATCATATAGTGATGAAAAACTGTTTAG
* *
322520 GCACTAATTGTGCAAGTTCGAAATTCATCTTAAGTTGATGAATAACCGTTTCGACACTAAGTGTG
194 GCACTAATTGTGCAAGTTCGAAATTCATCATAAGTTGATGAATAACCGTTTCG--ACTAACTGTG
* *
322585 TAATTCACGGAATTCATCATATGCTGATGAATAACCGTTTCACAGAATTCATCATATGTTGATGA
257 TAATTCACGGAATTCATCATATGCTGATGAATAACCGTTTCACAGAATTCATCATAAGTAGATGA
* * *
322650 ATAAAAATTTCAGCACTAAGTCATAATTCA
322 ATAAAAATATCAGCAATAAGTCATAATACA
* *
322680 AGGAATTTATCATATGTTGATGAATAACTGTTTTTGGCACTAAGTGTGCAATTCACGGAATTCAT
1 A--AATTCATCATATGTTGATGAATAACTG-TTTCGGCACTAAGTGTGCAATTCACGGAATTCAT
* *
322745 CATATGTTGATGAATAACCGTTTCGACACTAAATGAAATTCACGAAATTCATCATATGTTGATGA
63 CATATGTTGATGAATAATCGTTTCGGCACTAAATGAAATTCACGAAATTCATCATATGTTGATGA
* * *
322810 ATAATC-TTTTCTGCACTAAGTGTGCAATTT-ACTG-AATTCATCATATGGTGATGAATAA-TCG
128 ATAATCGTTTT-GGCACTAAGTGTGC-ATTTCAC-GAAATTCATCATATAGTGATGAAAAACT-G
* * * *
322871 TTT-GGCACTAATTGTGCAATTTACGGAATTCATCATATGTTGATGAATAACCGTTTCG-GT-AC
189 TTTAGGCACTAATTGTGCAAGTT-CGAAATTCATCATAAGTTGATGAATAACCGTTTCGACTAAC
* * * *
322933 TGTGTAATTCACGGAATTCATTATATGTTGATGAATAACCGTTTAGGCACTA-AGTGT-GT-A-A
253 TGTGTAATTCACGGAATTCATCATATGCTGATGAATAACCGTTT---CAC-AGAAT-TCATCATA
* * * *
322994 AGTACA-GAATGCATCATATGATGATG-AATAACCGTGCA-AAGTACA
313 AGTAGATGAAT--A-AAAAT-ATCA-GCAATAA--GT-CATAA-TACA
* * * *
323039 AAATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAAGT-ACAGAATTTATCA
1 AAATTCATCATATGTTGATGAATAACTGTTTCGGCACTAAGTGTGC-AATTCACGGAATTCATCA
323103 TATGTTGATGAATAATCGTTTCGGCACTAA
65 TATGTTGATGAATAATCGTTTCGGCACTAA
323133 GTGTGCAACC
Statistics
Matches: 693, Mismatches: 81, Indels: 86
0.81 0.09 0.10
Matches are distributed among these distances:
352 47 0.07
353 5 0.01
354 4 0.01
355 33 0.05
356 212 0.31
357 91 0.13
358 18 0.03
359 10 0.01
360 1 0.00
363 1 0.00
365 4 0.01
368 1 0.00
370 1 0.00
372 3 0.00
374 5 0.01
375 119 0.17
376 135 0.19
377 3 0.00
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (351 bp):
AAATTCATCATATGTTGATGAATAACTGTTTCGGCACTAAGTGTGCAATTCACGGAATTCATCAT
ATGTTGATGAATAATCGTTTCGGCACTAAATGAAATTCACGAAATTCATCATATGTTGATGAATA
ATCGTTTTGGCACTAAGTGTGCATTTCACGAAATTCATCATATAGTGATGAAAAACTGTTTAGGC
ACTAATTGTGCAAGTTCGAAATTCATCATAAGTTGATGAATAACCGTTTCGACTAACTGTGTAAT
TCACGGAATTCATCATATGCTGATGAATAACCGTTTCACAGAATTCATCATAAGTAGATGAATAA
AAATATCAGCAATAAGTCATAATACA
Found at i:323106 original size:93 final size:93
Alignment explanation
Indices: 322947--323117 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
322937 TAATTCACGG
* * *
322947 AATTCATTATATGTTGATGAATAACCGTTTAGGCACTAAGTGTGTAAAGTACAGAATGCATCATA
1 AATTCATCATATGTTGACGAATAACCGTTTAGGCACTAAGTGTGCAAAGTACAGAATGCATCATA
323012 TGATGATGAATAACCGTGCAAAGTACAA
66 TGATGATGAATAACCGTGCAAAGTACAA
* * **
323040 AATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAAGTACAGAATTTATCATA
1 AATTCATCATATGTTGACGAATAACCGTTTAGGCACTAAGTGTGCAAAGTACAGAATGCATCATA
*
323105 TGTTGATGAATAA
66 TGATGATGAATAA
323118 TCGTTTCGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (93 bp):
AATTCATCATATGTTGACGAATAACCGTTTAGGCACTAAGTGTGCAAAGTACAGAATGCATCATA
TGATGATGAATAACCGTGCAAAGTACAA
Found at i:323109 original size:54 final size:54
Alignment explanation
Indices: 323027--323140 Score: 185
Period size: 54 Copynumber: 2.1 Consensus size: 54
323017 ATGAATAACC
323027 GTGCAAAGTACAAAATTCATCATATGTTGACGAATAA-CTGTTTCGGCACTAAGT
1 GTGCAAAGTACAAAATTCATCATATGTTGACGAATAATC-GTTTCGGCACTAAGT
* * *
323081 GTGCAAAGTACAGAATTTATCATATGTTGATGAATAATCGTTTCGGCACTAAGT
1 GTGCAAAGTACAAAATTCATCATATGTTGACGAATAATCGTTTCGGCACTAAGT
323135 GTGCAA
1 GTGCAA
323141 CCCAAAGAAT
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
54 55 0.98
55 1 0.02
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (54 bp):
GTGCAAAGTACAAAATTCATCATATGTTGACGAATAATCGTTTCGGCACTAAGT
Found at i:323150 original size:54 final size:54
Alignment explanation
Indices: 323040--323154 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
323030 CAAAGTACAA
** *
323040 AATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAAGTACAG
1 AATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAACCAAAG
* * *
323094 AATTTATCATATGTTGATGAATAA-TCGTTTCGGCACTAAGTGTGCAACCCAAAG
1 AATTCATCATATGTTGACGAATAACT-GTTTCGGCACTAAGTGTGCAAACCAAAG
323148 AATTCAT
1 AATTCAT
323155 AATGAGTTTA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
53 1 0.02
54 52 0.98
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (54 bp):
AATTCATCATATGTTGACGAATAACTGTTTCGGCACTAAGTGTGCAAACCAAAG
Found at i:326630 original size:54 final size:54
Alignment explanation
Indices: 326567--326994 Score: 537
Period size: 54 Copynumber: 8.0 Consensus size: 54
326557 TTACCAAATA
* * **
326567 GGCACTAAGTGTACAATTCACGGAATTCATCATATGTTGATGAATAACCACTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
326621 GGCACTAAGTGTGCAATTCATGGAATTCATCATATATTGATGAAT-ACAGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
*
326674 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTT
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
*
326728 GGCACTAAGCGTGCAATTCACGAAATTCATCATATG-TGAT--ATAACCGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
326779 GGCACTGATTGTGCAATTCACGAAATTCATCATATGTTGATGAATAATCGTTTT
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * * * *
326833 GGTACTAAGTGTGCATTTCACGAAATTCATCATATATTGATGAAAAAACTGTTTA
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATG-AATAACCGTTTC
* * *
326888 GGCACTAATTGTGCAAAGTT--CGAAATTCATCTTAAGTTGATGAATAACCGTTTC
1 GGCACTAAGTGTGC-AA-TTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
326942 GACACTAAGTG-GTAATTCACGGAATTCATCATATGCTGATGAATAACCGTTTC
1 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
326995 ACAGAATCAT
Statistics
Matches: 322, Mismatches: 43, Indels: 19
0.84 0.11 0.05
Matches are distributed among these distances:
51 45 0.14
52 6 0.02
53 82 0.25
54 147 0.46
55 39 0.12
56 1 0.00
57 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (54 bp):
GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTC
Found at i:326831 original size:105 final size:107
Alignment explanation
Indices: 326567--326994 Score: 503
Period size: 105 Copynumber: 4.0 Consensus size: 107
326557 TTACCAAATA
* * * **
326567 GGCACTAAGTGTACAATTCACGGAATTCATCATATGTTGATGAATAACCACTTCGGCACTAAGTG
1 GGCACTAATTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* * *
326632 TGCAATTCATGGAATTCATCATAT-ATTGATGA-ATACAGTTTC
66 TGCAATTCACGAAATTCATCATATGA-TGATGATA-ACCGTTTC
* * *
326674 GGCACTAAGTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTTGGCACTAAGCG
1 GGCACTAATTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
326739 TGCAATTCACGAAATTCATCATATG-TGAT-ATAACCGTTTC
66 TGCAATTCACGAAATTCATCATATGATGATGATAACCGTTTC
* * * *
326779 GGCACTGATTGTGCAATTCACGAAATTCATCATATGTTGATGAATAATCGTTTTGGTACTAAGTG
1 GGCACTAATTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* * * *
326844 TGCATTTCACGAAATTCATCATAT-ATTGATGAAAAAACTGTTTA
66 TGCAATTCACGAAATTCATCATATGA-TGATG--ATAACCGTTTC
* * *
326888 GGCACTAATTGTGCAAAGTT--CGAAATTCATCTTAAGTTGATGAATAACCGTTTCGACACTAAG
1 GGCACTAATTGTGC-AA-TTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAG
* * *
326951 TG-GTAATTCACGGAATTCATCATATGCTGATGAATAACCGTTTC
64 TGTGCAATTCACGAAATTCATCATATGATGATG-ATAACCGTTTC
326995 ACAGAATCAT
Statistics
Matches: 279, Mismatches: 32, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
105 91 0.33
106 9 0.03
107 90 0.32
108 25 0.09
109 60 0.22
110 2 0.01
111 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (107 bp):
GGCACTAATTGTGCAATTCACGAAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
TGCAATTCACGAAATTCATCATATGATGATGATAACCGTTTC
Found at i:327029 original size:34 final size:35
Alignment explanation
Indices: 326957--327029 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
326947 TAAGTGGTAA
* ***
326957 TTCACGGAATTCATCATATGCTGATGAATAACCGT
1 TTCACAGAATTCATCATATGCTGATGAATAAAAAT
*
326992 TTCACAGAA-TCATCATATGTTGATGAATAAAAAT
1 TTCACAGAATTCATCATATGCTGATGAATAAAAAT
327026 TTCA
1 TTCA
327030 GCACTAAGTC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
34 25 0.76
35 8 0.24
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (35 bp):
TTCACAGAATTCATCATATGCTGATGAATAAAAAT
Found at i:327163 original size:51 final size:52
Alignment explanation
Indices: 326992--327224 Score: 181
Period size: 54 Copynumber: 4.4 Consensus size: 52
326982 GAATAACCGT
*** * *
326992 TTCACAGAA-TCATCATATGTTGATGAATAAAAATTTCAGCACTAAG-TCAATAA
1 TTCAC-GAATTCATCATATGTTGATGAATAACCGTTTCTGCACTAAGAT-GA-AA
* * ** * * *
327045 TTCAAGGAATTTATCATATGTT-ATGAATAACTATTTTTGGCACTAAGTGTGCAA
1 TTC-ACGAATTCATCATATGTTGATGAATAACCGTTTCT-GCACTAAG-ATGAAA
327099 TTCACGGAATTCATCATATGTTGATG-ATAACCGTTTC-GACACTAA-ATGAAA
1 TTCAC-GAATTCATCATATGTTGATGAATAACCGTTTCTG-CACTAAGATGAAA
* * * *
327150 TTCACGAAATTCATCATATGTTGATGAATAATCTTTTCTGCACTAAGTGTGCAA
1 TTCACG-AATTCATCATATGTTGATGAATAACCGTTTCTGCACTAAG-ATGAAA
327204 TTCACTGAATTCATCATATGT
1 TTCAC-GAATTCATCATATGT
327225 G
Statistics
Matches: 147, Mismatches: 19, Indels: 27
0.76 0.10 0.14
Matches are distributed among these distances:
50 1 0.01
51 28 0.19
52 16 0.11
53 26 0.18
54 71 0.48
55 4 0.03
56 1 0.01
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.35
Consensus pattern (52 bp):
TTCACGAATTCATCATATGTTGATGAATAACCGTTTCTGCACTAAGATGAAA
Done.