Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009434.1 Hibiscus syriacus cultivar Beakdansim tig00113490_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30464

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5495--5522
8
3.5
8
100
0
56
39
0
10
50
1.37
9031--9087
7
7.9
8
75
25
56
75
0
10
14
1.05
9031--9083
20
2.5
20
81
6
61
77
0
9
13
0.99
9031--9087
21
2.7
22
86
8
82
75
0
10
14
1.05
10086--10454
55
6.7
55
88
4
514
30
16
25
27
1.96
10086--10454
166
2.2
165
87
4
514
30
16
25
27
1.96
16917--16959
21
2.0
21
86
0
59
13
20
37
27
1.91
17373--17435
21
3.0
21
79
4
74
30
36
19
14
1.91
18270--18321
21
2.5
21
81
6
61
46
21
0
32
1.52
18262--18390
42
3.1
42
77
5
136
42
24
3
29
1.70
19649--19682
12
2.8
12
95
4
59
58
0
41
0
0.98
19807--19874
11
6.2
11
74
6
66
32
17
25
25
1.97
20081--20132
2
26.0
2
100
0
104
50
0
0
50
1.00
20587--20654
24
2.7
25
84
6
93
51
0
4
44
1.21
20637--20691
24
2.3
25
84
6
69
49
0
1
49
1.11
22072--22103
7
4.6
7
100
0
64
28
28
12
31
1.93
28483--28681
82
2.5
80
80
8
224
56
10
3
30
1.48

Tables:   1

The End!