Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009436.1 Hibiscus syriacus cultivar Beakdansim tig00113494_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78693

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50--86
18
2.1
18
94
0
65
48
5
10
35
1.61
7039--7137
10
10.3
9
73
10
72
16
24
30
29
1.96
7038--7131
19
4.8
19
82
3
107
17
22
30
29
1.96
14337--14415
19
4.1
20
75
8
74
17
21
29
31
1.96
14433--14470
17
2.2
17
95
0
67
18
44
23
13
1.85
21542--21578
13
2.8
13
91
0
56
13
45
27
13
1.81
21596--21733
29
4.8
29
86
3
188
23
7
21
47
1.77
21596--21756
58
2.8
58
82
7
175
24
7
22
45
1.77
21596--21756
87
1.9
87
81
2
198
24
7
22
45
1.77
21712--21772
29
2.1
29
87
0
86
29
3
24
42
1.70
28985--29037
5
9.4
5
77
22
52
18
52
20
7
1.69
28985--29032
18
2.7
18
93
0
87
18
52
20
8
1.71
28985--29037
23
2.3
20
75
25
52
18
52
20
7
1.69
29056--29194
29
4.8
29
86
0
181
23
8
22
45
1.80
29172--29238
29
2.3
29
84
2
82
29
5
19
44
1.74
30654--30692
17
2.3
17
81
0
51
28
2
7
61
1.37
37985--38080
33
2.9
33
82
0
120
37
23
17
20
1.94
49480--49524
22
2.1
22
91
4
74
24
17
17
40
1.91
50770--50810
20
2.0
20
90
4
64
70
2
14
12
1.26
60622--60661
21
1.9
21
89
0
62
37
12
10
40
1.77
62066--62097
2
15.5
2
93
6
55
50
3
0
46
1.17
64076--64109
3
11.7
3
93
6
61
64
0
0
35
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64401--64594
55
3.6
54
88
6
277
28
25
14
31
1.95
64401--64641
55
4.4
55
85
5
269
27
24
14
32
1.95
64360--64756
110
3.6
108
79
8
347
24
25
15
33
1.95
64568--64759
54
3.5
54
85
3
244
25
25
16
33
1.96
77136--77168
7
4.9
7
88
7
50
54
3
0
42
1.15

Tables:   1

The End!