Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009438.1 Hibiscus syriacus cultivar Beakdansim tig00113496_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123817

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1858--1938
37
2.2
38
95
2
146
32
12
18
37
1.88
2829--2867
3
13.0
3
100
0
78
66
0
0
33
0.92
3270--3305
3
11.7
3
88
5
54
30
0
0
69
0.89
4545--4600
25
2.3
25
78
9
62
25
1
3
69
1.14
17601--17646
23
2.1
22
84
8
58
2
8
8
80
0.99
23168--23212
2
22.5
2
95
0
81
51
0
0
48
1.00
25007--25073
3
22.3
3
85
14
86
68
0
0
31
0.90
25663--25744
42
2.0
42
85
2
112
36
19
18
25
1.94
25213--26401
257
4.7
257
84
5
1481
34
15
16
33
1.90
26159--26262
41
2.5
42
80
1
120
30
21
21
26
1.98
34605--34643
2
19.5
2
100
0
78
48
0
0
51
1.00
36537--36574
15
2.4
16
91
4
60
63
0
2
34
1.09
40295--40328
13
2.6
13
100
0
68
14
23
0
61
1.33
43881--44010
54
2.4
54
90
1
199
44
13
23
18
1.85
43881--44020
53
2.6
54
82
9
171
43
15
22
19
1.87
45062--45257
40
5.3
40
66
26
144
32
23
17
26
1.97
45103--45222
32
3.5
32
75
16
123
33
25
16
25
1.96
45029--45257
72
3.2
72
92
0
368
32
24
17
25
1.97
45705--45838
35
3.7
35
86
5
162
48
5
8
38
1.56
54821--55123
149
2.0
149
97
0
570
34
19
17
28
1.95
56112--56146
18
1.9
18
88
11
54
22
17
5
54
1.64
56724--56768
21
2.1
21
87
0
63
15
24
28
31
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57566--58052
48
10.0
48
83
4
557
27
19
14
38
1.91
63271--63326
21
2.7
21
91
2
78
55
17
8
17
1.67
63278--63326
21
2.3
21
96
0
89
55
18
8
18
1.67
67155--67186
15
2.1
16
88
11
50
43
0
3
53
1.16
67443--67559
29
4.0
29
75
10
94
43
5
0
50
1.30
67470--67559
29
3.0
31
80
6
121
46
3
0
50
1.18
67469--67559
30
3.1
29
75
12
103
46
3
0
50
1.17
67580--67911
30
11.7
26
68
17
71
50
2
6
40
1.40
67594--67668
29
2.6
28
85
10
89
50
4
6
38
1.47
67677--67833
60
2.6
59
81
5
190
52
0
7
40
1.33
67654--67895
30
8.1
30
75
4
152
52
2
6
38
1.39
67751--67786
13
2.8
13
87
4
56
50
0
0
50
1.00
67792--67898
29
3.6
30
78
3
101
51
1
8
38
1.43
68523--68562
20
2.0
20
90
0
62
42
7
20
30
1.79
80152--80211
24
2.5
24
83
0
75
5
15
38
41
1.68
85067--85168
52
1.9
53
84
2
134
39
15
16
28
1.90
85352--85397
22
2.1
22
91
0
74
34
10
6
47
1.64
85355--85413
22
2.7
22
77
12
59
33
15
8
42
1.77
85893--85944
20
2.5
21
93
3
88
30
23
11
34
1.90
93151--93200
11
4.5
11
74
0
55
36
2
6
56
1.36
93151--93215
33
2.0
33
93
3
114
40
1
7
50
1.40
95221--95245
2
12.5
2
100
0
50
52
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
98157--98258
53
1.9
53
93
0
177
40
21
15
22
1.91
102257--102302
21
2.1
22
88
11
69
56
0
2
41
1.11
103901--103990
3
30.0
3
95
0
162
32
1
0
66
0.99
106094--106136
22
2.0
21
86
4
59
34
2
2
60
1.22
116793--116861
1
69.0
1
85
0
93
92
0
7
0
0.38
116791--116861
36
2.0
36
91
0
115
91
0
8
0
0.42
118001--118435
85
5.2
84
93
1
678
27
13
23
36
1.92
118001--118395
169
2.3
167
93
1
673
25
13
23
36
1.92
119212--119870
113
5.8
113
93
1
1063
35
14
18
30
1.91
120121--120220
3
34.0
3
92
7
170
33
0
1
66
0.99

Tables:   1

The End!