genome.fa.s9441.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009441.1 Hibiscus syriacus cultivar Beakdansim tig00113505_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72929

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62--135	24	3.1	24	80	0	85	47	14	10	27	1.78
2676--2733	27	2.1	27	87	6	82	22	10	18	48	1.78
3341--3375	18	1.9	18	88	0	52	14	34	28	22	1.93
5142--5204	29	2.3	27	89	8	92	22	7	3	66	1.32
25336--25381	24	1.9	24	86	0	65	30	0	15	54	1.41
25344--25397	24	2.2	24	81	12	67	31	0	14	53	1.41
26673--26896	118	1.9	118	85	1	306	35	10	15	38	1.82
29664--29733	35	2.0	35	91	0	113	37	4	31	27	1.76
31290--31484	36	5.4	36	76	7	173	28	13	9	49	1.72
31351--31484	35	3.8	34	79	5	124	32	11	7	48	1.68
31299--31499	108	1.8	109	82	5	255	28	12	9	49	1.72
31501--31633	36	3.7	36	82	0	122	33	9	9	46	1.70
31360--31619	131	2.0	131	81	4	301	31	10	9	48	1.70
31326--31631	167	1.8	168	81	3	384	31	10	9	49	1.69
31766--31799	12	2.8	12	86	4	50	32	0	5	61	1.20
31766--31804	13	3.1	13	81	7	53	33	0	5	61	1.18
45723--45763	20	2.1	19	90	4	64	31	9	26	31	1.89
46160--46205	23	2.0	24	87	12	69	73	0	6	19	1.04
54256--54301	24	1.9	24	86	0	65	28	2	15	54	1.53
54264--54317	24	2.2	24	81	12	67	31	0	14	53	1.41
55592--55815	118	1.9	118	85	1	306	35	10	15	38	1.82
58586--58655	35	2.0	35	91	0	113	37	4	31	27	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60212--60406	36	5.4	36	76	7	173	28	13	9	49	1.72
60273--60406	35	3.8	34	79	5	124	32	11	7	48	1.68
60221--60421	108	1.8	109	82	5	255	28	12	9	49	1.72
60423--60555	36	3.7	36	82	0	122	33	9	9	46	1.70
60282--60541	131	2.0	131	81	4	301	31	10	9	48	1.70
60248--60553	167	1.8	168	81	3	384	31	10	9	49	1.69
60688--60721	12	2.8	12	86	4	50	32	0	5	61	1.20
60688--60726	13	3.1	13	81	7	53	33	0	5	61	1.18
65047--65174	3	42.7	3	90	3	204	35	2	0	62	1.08
67230--67314	27	3.1	28	73	11	77	27	5	2	64	1.28

Tables:   1

The End!