genome.fa.s9442.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009442.1 Hibiscus syriacus cultivar Beakdansim tig00113506_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81879

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8158--8198	20	2.1	19	90	4	64	31	9	26	31	1.89
8595--8640	23	2.0	24	87	12	69	73	0	6	19	1.04
16693--16738	24	1.9	24	86	0	65	28	2	15	54	1.53
16701--16754	24	2.2	24	81	12	67	31	0	14	53	1.41
18031--18254	118	1.9	118	85	1	306	35	10	15	38	1.82
21024--21093	35	2.0	35	91	0	113	37	4	31	27	1.76
22712--22844	34	3.8	33	79	6	122	32	12	7	48	1.68
22650--22844	36	5.5	35	78	5	185	28	13	9	49	1.72
22861--22993	36	3.7	36	82	0	122	33	9	9	46	1.70
22721--22979	131	2.0	130	81	3	306	31	10	9	48	1.70
23126--23159	12	2.8	12	86	4	50	32	0	5	61	1.20
23126--23164	13	3.1	13	81	7	53	33	0	5	61	1.18
27503--27642	3	46.7	3	92	0	235	35	2	0	62	1.07
29058--29090	15	2.3	15	89	5	50	54	3	0	42	1.15
29807--29843	15	2.7	15	88	12	53	29	5	2	62	1.31
40649--40688	1	40.0	1	94	0	71	97	0	2	0	0.17
41630--42570	52	18.1	52	96	1	1660	24	14	24	37	1.93
42512--42716	83	2.5	83	97	0	383	28	13	21	37	1.91
43274--43939	113	5.8	113	92	4	1021	37	13	20	28	1.91
43270--43941	229	2.9	229	91	3	1075	37	13	19	28	1.91
44189--44319	3	43.7	3	92	0	217	35	2	0	62	1.08
51700--51774	32	2.4	31	82	4	96	32	30	22	14	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51793--51851	31	1.9	31	86	6	84	38	23	15	22	1.92
51919--52012	24	4.0	24	83	4	102	55	13	17	13	1.70
56385--56464	24	3.4	24	65	20	60	57	16	2	23	1.51
58601--58743	56	2.5	56	86	1	187	33	19	23	23	1.97
59109--59158	25	2.1	24	82	17	61	34	10	8	48	1.66
60073--60179	24	4.5	24	73	9	83	50	17	10	21	1.75
62049--62103	18	3.0	18	81	2	65	30	16	25	27	1.96
62096--62144	13	3.5	14	80	8	55	20	24	28	26	1.99
64162--64220	12	4.9	12	72	14	50	52	16	11	18	1.74
64162--64268	24	4.5	24	76	4	90	49	18	11	20	1.78
66033--66086	14	3.9	14	92	0	72	20	24	29	25	1.99
67206--67276	27	2.7	26	80	6	79	29	15	12	42	1.84
76438--76585	56	2.6	56	83	2	161	32	20	22	24	1.98
77551--77621	27	2.6	27	78	6	81	29	12	12	45	1.79

Tables:   1

The End!