Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009443.1 Hibiscus syriacus cultivar Beakdansim tig00113507_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131245

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--78
4
19.0
4
87
10
113
23
2
25
48
1.63
143--190
2
25.0
2
87
8
73
47
0
2
50
1.12
143--197
10
5.2
11
86
6
62
45
0
1
52
1.11
143--200
14
4.1
14
81
12
66
44
0
1
53
1.10
283--321
3
14.0
3
84
15
57
33
0
0
66
0.92
283--323
11
3.7
11
93
6
66
34
0
0
65
0.93
6496--6557
31
2.0
31
96
0
115
22
14
38
24
1.91
6934--7114
88
2.1
88
98
0
353
33
11
17
38
1.85
10013--10068
20
2.6
22
86
10
73
37
14
0
48
1.44
10013--10067
22
2.7
19
83
13
65
38
14
0
47
1.45
19085--19119
2
17.5
2
93
0
61
45
0
0
54
0.99
23490--23561
15
4.5
16
79
11
76
15
23
30
30
1.95
23490--23561
32
2.2
32
85
4
92
15
23
30
30
1.95
26645--26839
84
2.4
80
85
7
261
32
16
22
28
1.96
26647--26913
89
3.2
85
82
7
246
29
18
23
28
1.98
34971--35276
121
2.5
121
86
1
425
32
18
6
42
1.75
36065--36111
20
2.3
21
78
10
62
63
8
2
25
1.34
37392--37566
3
57.7
3
86
4
244
61
1
1
35
1.13
37864--38423
113
4.9
113
94
0
949
28
19
14
38
1.91
38981--39850
52
16.7
52
93
2
1471
38
22
15
24
1.92
40792--40827
1
36.0
1
88
0
54
0
5
0
94
0.31
52222--52268
20
2.3
21
78
10
62
63
8
2
25
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53550--53731
3
59.7
3
86
3
256
61
1
1
35
1.13
53820--53865
19
2.4
19
77
0
56
47
0
10
41
1.38
56376--56420
19
2.2
21
84
7
58
44
0
2
53
1.13
61067--61171
54
1.9
54
94
0
183
40
21
8
28
1.83
67698--67742
22
2.0
22
100
0
90
26
22
28
22
1.99
72353--72384
13
2.3
15
89
10
50
62
0
0
37
0.95
84062--84147
31
2.8
31
85
3
111
38
10
11
39
1.76
85948--85972
2
12.5
2
100
0
50
48
0
0
52
1.00
87429--87466
18
2.2
18
86
9
53
36
0
0
63
0.95
87526--87565
14
2.6
16
84
15
57
60
15
0
25
1.35
98936--98966
14
2.2
14
94
0
53
61
6
3
29
1.37
99786--99813
2
14.0
2
100
0
56
50
0
0
50
1.00
100390--100417
2
14.0
2
100
0
56
50
0
0
50
1.00
107130--107229
10
10.3
10
73
19
79
15
28
28
29
1.96
107109--107168
21
2.9
21
95
2
104
16
26
23
33
1.96
107111--107229
19
6.1
19
83
11
84
15
27
26
30
1.96
107226--107288
5
11.8
5
80
12
72
19
52
22
6
1.68
107248--107295
22
2.2
22
100
0
96
18
50
22
8
1.74
107226--107302
27
2.8
27
94
4
127
18
48
23
10
1.78
107225--107283
17
3.9
17
71
28
69
18
50
22
8
1.73
107285--107315
7
4.4
7
95
0
53
19
29
25
25
1.99
114468--114559
10
9.6
9
76
13
76
16
26
28
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
114469--114567
19
5.1
19
77
15
78
15
27
28
29
1.96
114467--114541
29
2.5
30
89
8
118
17
26
26
29
1.97
114564--114643
5
14.8
5
75
14
70
18
50
22
8
1.74
114564--114650
22
4.0
22
81
11
115
18
48
22
10
1.78
114581--114657
27
2.8
27
92
4
118
18
46
23
11
1.81
114563--114611
17
2.9
17
100
0
98
18
48
22
10
1.77
114640--114670
7
4.4
7
95
0
53
19
29
25
25
1.99
117601--117645
23
2.0
23
86
0
63
62
0
4
33
1.15
117605--117658
23
2.4
22
75
9
54
59
3
3
33
1.33
119981--120026
23
2.0
23
86
0
65
45
8
21
23
1.80
120530--120561
15
2.1
16
88
11
50
46
31
0
21
1.52
120536--120590
21
2.5
23
82
11
71
47
32
0
20
1.50
126810--126873
29
2.2
28
78
13
69
67
1
4
26
1.19
128145--128191
23
2.0
23
95
0
85
23
6
12
57
1.58

Tables:   1

The End!