Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009445.1 Hibiscus syriacus cultivar Beakdansim tig00113539_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49403

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6069--6115
22
2.1
23
92
4
78
38
4
12
44
1.62
6228--6285
28
2.1
28
93
0
98
41
12
17
29
1.85
6282--6341
30
2.0
30
93
0
102
25
20
28
26
1.99
7816--7867
23
2.3
23
86
3
70
38
9
15
36
1.80
7795--7950
85
1.8
84
90
4
251
40
10
14
33
1.81
8106--8545
201
2.3
188
79
12
466
31
17
14
36
1.90
8174--8659
200
2.4
198
83
7
599
28
15
15
40
1.88
11200--11611
195
2.1
198
86
7
563
30
16
14
37
1.89
13102--13145
15
2.9
15
82
0
52
13
36
15
34
1.87
13129--13159
12
2.6
12
94
0
53
16
32
6
45
1.72
14627--15165
202
2.7
201
91
3
865
33
16
14
36
1.88
15420--15463
19
2.4
19
92
7
74
56
9
0
34
1.31
17256--17321
33
2.0
33
87
0
96
22
43
0
33
1.54
17355--17398
21
2.1
21
91
0
70
15
31
11
40
1.83
19589--20062
182
2.6
181
88
3
684
27
16
14
40
1.88
24351--24449
10
10.3
9
79
12
90
15
28
27
29
1.96
24352--24449
19
5.1
19
79
16
87
14
28
27
29
1.95
24350--24424
29
2.5
30
89
8
118
17
26
26
29
1.97
24351--24449
29
3.4
28
84
8
101
15
28
27
29
1.96
24446--24503
5
10.8
5
78
14
62
18
51
22
6
1.70
24446--24510
22
3.0
22
100
0
130
18
49
23
9
1.76
24500--24537
7
5.4
7
100
0
76
15
28
28
26
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31685--31760
20
3.8
20
75
16
77
17
26
26
30
1.97
31706--31785
10
8.3
10
74
21
73
13
28
28
28
1.94
31685--31760
30
2.5
30
83
14
111
17
26
26
30
1.97
31748--31784
19
1.9
19
100
0
74
10
27
32
29
1.90
31782--31839
5
10.8
5
78
14
62
18
51
22
6
1.70
31782--31846
22
3.0
22
100
0
130
18
49
23
9
1.76
31836--31873
7
5.4
7
100
0
76
15
28
28
26
1.96
35860--35949
39
2.3
39
92
0
153
30
15
21
33
1.94
41490--41551
31
2.0
32
83
3
81
30
8
11
50
1.67
41691--41764
24
2.8
27
73
24
77
51
1
4
43
1.29
41710--41778
24
3.0
21
80
17
75
50
1
4
43
1.30
42466--42568
24
4.3
23
70
18
75
27
0
15
56
1.46
42466--42650
73
2.6
70
84
9
225
30
0
13
55
1.43
43323--43378
7
8.1
7
77
15
55
23
5
0
71
1.06
43356--43422
35
1.9
35
81
6
82
26
1
0
71
0.94
48770--48827
5
11.8
5
78
10
57
15
5
3
75
1.11

Tables:   1

The End!