Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009448.1 Hibiscus syriacus cultivar Beakdansim tig00113548_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 757038
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
File 1 of 3
Found at i:12 original size:7 final size:7
Alignment explanation
Indices: 1--12921 Score: 15588
Period size: 7 Copynumber: 1892.6 Consensus size: 7
1 ACCCTAA
1 ACCCTAA
8 ACCCTAA
1 ACCCTAA
15 ACCCTAA
1 ACCCTAA
22 ACCCTAAAAA
1 ACCCT---AA
32 ACCCTAA
1 ACCCTAA
39 A-CCT-A
1 ACCCTAA
44 ACCCTAA
1 ACCCTAA
51 ACCCTAA
1 ACCCTAA
58 ACCCTAA
1 ACCCTAA
65 ACCCTAA
1 ACCCTAA
72 ACCCTAA
1 ACCCTAA
79 ACCCT-A
1 ACCCTAA
85 ACCCTAA
1 ACCCTAA
92 ACCCTAA
1 ACCCTAA
99 ACCCTAAA
1 ACCCT-AA
107 ACCCTAA
1 ACCCTAA
114 ACCCTAA
1 ACCCTAA
121 ACCCTAA
1 ACCCTAA
128 ACCCTAAA
1 ACCCT-AA
136 ACCCTAA
1 ACCCTAA
143 ACCCT-A
1 ACCCTAA
149 ACCCTAA
1 ACCCTAA
*
156 ACCCGAA
1 ACCCTAA
163 ACCCT-A
1 ACCCTAA
169 ACCCT-A
1 ACCCTAA
175 ACCCTAA
1 ACCCTAA
182 ACCCTAA
1 ACCCTAA
189 ACCCTAA
1 ACCCTAA
196 ACCCTAA
1 ACCCTAA
203 ACCCTAA
1 ACCCTAA
210 ACCCTAA
1 ACCCTAA
217 ACCCTAA
1 ACCCTAA
224 ACCCT-A
1 ACCCTAA
230 ACCCTAA
1 ACCCTAA
237 ACCCTAA
1 ACCCTAA
244 ACCCTAA
1 ACCCTAA
*
251 ACCCGAA
1 ACCCTAA
258 ACCCTAA
1 ACCCTAA
265 ACCCTAA
1 ACCCTAA
272 ACCCTAA
1 ACCCTAA
279 ACCCTAA
1 ACCCTAA
286 ACCCTAA
1 ACCCTAA
293 ACCCTAA
1 ACCCTAA
300 ACCCTAA
1 ACCCTAA
307 ACCCTAA
1 ACCCTAA
314 ACCCTAA
1 ACCCTAA
321 ACCCTAA
1 ACCCTAA
328 ACCCTAA
1 ACCCTAA
335 ACCCTAA
1 ACCCTAA
342 ACCCT-A
1 ACCCTAA
348 ACCCTAA
1 ACCCTAA
355 ACCCTAA
1 ACCCTAA
362 ACCCTAA
1 ACCCTAA
369 ACCCTAA
1 ACCCTAA
376 ACCCTAA
1 ACCCTAA
383 ACCCTAA
1 ACCCTAA
390 ACCCT-A
1 ACCCTAA
396 ACCCTAA
1 ACCCTAA
403 ACCCTAA
1 ACCCTAA
410 ACCCTAA
1 ACCCTAA
417 ACCCTAA
1 ACCCTAA
424 A-CCTAA
1 ACCCTAA
430 ACCCTAA
1 ACCCTAA
437 ACCCTAA
1 ACCCTAA
444 ACCCT-A
1 ACCCTAA
450 ACCCTAA
1 ACCCTAA
457 ACCCTAA
1 ACCCTAA
464 ACCCTAAA
1 ACCCT-AA
472 ACCCTAA
1 ACCCTAA
479 ACCCT-A
1 ACCCTAA
485 ACCCTAA
1 ACCCTAA
492 ACCCTAA
1 ACCCTAA
499 A-CCT-A
1 ACCCTAA
504 ACCCTAA
1 ACCCTAA
511 ACCCT-A
1 ACCCTAA
517 ACCCTAA
1 ACCCTAA
*
524 ACCCGAA
1 ACCCTAA
531 ACCC-AA
1 ACCCTAA
537 ACCCTAA
1 ACCCTAA
544 ACCCTAA
1 ACCCTAA
551 A-CCTAA
1 ACCCTAA
557 ACCCTAA
1 ACCCTAA
564 ACCCTAA
1 ACCCTAA
571 ACCCTAA
1 ACCCTAA
578 ACCCTAAACA
1 ACCCT--A-A
588 ACCCTAA
1 ACCCTAA
595 ACCC-AA
1 ACCCTAA
601 ACCCTAA
1 ACCCTAA
608 ACCCTAA
1 ACCCTAA
615 ACCCTAA
1 ACCCTAA
622 ACCCT-A
1 ACCCTAA
628 ACCCTAAA
1 ACCCT-AA
636 ACCCTAA
1 ACCCTAA
643 ACCCT-A
1 ACCCTAA
649 ACCCTAA
1 ACCCTAA
656 ACCCTAA
1 ACCCTAA
663 ACCCT-A
1 ACCCTAA
669 ACCCT-A
1 ACCCTAA
*
675 ACCCAAA
1 ACCCTAA
682 ACCCTAA
1 ACCCTAA
689 ACCCTAA
1 ACCCTAA
696 ACCCTAA
1 ACCCTAA
703 ACCCT-A
1 ACCCTAA
709 ACCCT-A
1 ACCCTAA
715 ACCCT-A
1 ACCCTAA
721 ACCCTAA
1 ACCCTAA
728 ACCCTAA
1 ACCCTAA
735 ACCCTAA
1 ACCCTAA
742 ACCCT-A
1 ACCCTAA
748 ACCCTAA
1 ACCCTAA
755 ACCCTAA
1 ACCCTAA
762 ACCCTAA
1 ACCCTAA
769 ACCCTAA
1 ACCCTAA
*
776 ACCCGAA
1 ACCCTAA
783 ACCCTAA
1 ACCCTAA
790 ACCCTAA
1 ACCCTAA
*
797 ACCCGAAAA
1 ACCC--TAA
806 ACCC--A
1 ACCCTAA
811 ACCCTAA
1 ACCCTAA
818 ACCCTAA
1 ACCCTAA
825 ACCCTAA
1 ACCCTAA
832 ACCCCTAA
1 A-CCCTAA
840 ACCCTAA
1 ACCCTAA
847 ACCCT-A
1 ACCCTAA
853 ACCCTAA
1 ACCCTAA
860 ACCCTAA
1 ACCCTAA
867 ACCCTAA
1 ACCCTAA
874 ACCCTAA
1 ACCCTAA
881 ACCCTAA
1 ACCCTAA
888 ACCCTAA
1 ACCCTAA
895 ACCCTAA
1 ACCCTAA
902 ACCCTAA
1 ACCCTAA
909 ACCC-AA
1 ACCCTAA
915 ACCCTAA
1 ACCCTAA
922 ACCCT-A
1 ACCCTAA
928 ACCCTAA
1 ACCCTAA
935 ACCCTAA
1 ACCCTAA
942 ACCCTAAAA
1 ACCCT--AA
951 ACCCT-A
1 ACCCTAA
957 ACCCTAA
1 ACCCTAA
964 ACCCTAA
1 ACCCTAA
971 ACCCT-A
1 ACCCTAA
977 ACCCTAA
1 ACCCTAA
984 ACCCT-A
1 ACCCTAA
990 ACCCTAA
1 ACCCTAA
997 ACCCT-A
1 ACCCTAA
1003 ACCCTAA
1 ACCCTAA
1010 ACCCTAA
1 ACCCTAA
1017 ACCCTAA
1 ACCCTAA
1024 ACCCTAA
1 ACCCTAA
1031 ACCCTAA
1 ACCCTAA
1038 ACCCTAA
1 ACCCTAA
1045 ACCCTAA
1 ACCCTAA
1052 ACCCTAA
1 ACCCTAA
*
1059 A---AAA
1 ACCCTAA
1063 ACCCTAA
1 ACCCTAA
1070 ACCCTAA
1 ACCCTAA
1077 ACCCTAA
1 ACCCTAA
1084 ACCCTAA
1 ACCCTAA
1091 ACCCTAA
1 ACCCTAA
1098 ACCCTAA
1 ACCCTAA
1105 ACCCTAA
1 ACCCTAA
1112 ACCCTAA
1 ACCCTAA
1119 ACCC-AA
1 ACCCTAA
1125 ACCCTAA
1 ACCCTAA
1132 ACCCTAA
1 ACCCTAA
1139 ACCCTAA
1 ACCCTAA
1146 ACCCTAA
1 ACCCTAA
1153 ACCCT-A
1 ACCCTAA
1159 ACCCTAA
1 ACCCTAA
1166 ACCCTAA
1 ACCCTAA
1173 ACCCTAA
1 ACCCTAA
1180 ACCCTAA
1 ACCCTAA
1187 ACCCTAA
1 ACCCTAA
1194 ACCCT-A
1 ACCCTAA
*
1200 ACCCGAA
1 ACCCTAA
1207 ACCCT-A
1 ACCCTAA
1213 ACCCTAA
1 ACCCTAA
1220 ACCCTAA
1 ACCCTAA
1227 ACCCTAA
1 ACCCTAA
1234 ACCCTAA
1 ACCCTAA
1241 ACCCTAA
1 ACCCTAA
1248 ACCCTAA
1 ACCCTAA
1255 ACCCTAA
1 ACCCTAA
1262 ACCCTAA
1 ACCCTAA
1269 ACCCTAA
1 ACCCTAA
1276 ACCCTAA
1 ACCCTAA
1283 ACCC-AA
1 ACCCTAA
1289 ACCCTAA
1 ACCCTAA
1296 ACCCTAA
1 ACCCTAA
1303 ACCCTAA
1 ACCCTAA
1310 ACCCTAA
1 ACCCTAA
1317 ACCCTAA
1 ACCCTAA
1324 ACCCTAAAA
1 ACCCT--AA
1333 ACCCTAA
1 ACCCTAA
1340 ACCCT-A
1 ACCCTAA
1346 ACCCT-A
1 ACCCTAA
1352 ACCCTAA
1 ACCCTAA
1359 ACCCTAA
1 ACCCTAA
1366 ACCCTAA
1 ACCCTAA
1373 ACCCTAA
1 ACCCTAA
1380 ACCCT-A
1 ACCCTAA
1386 ACCC-AA
1 ACCCTAA
1392 ACCCTAA
1 ACCCTAA
1399 ACCCTAA
1 ACCCTAA
1406 ACCCTAA
1 ACCCTAA
1413 ACCCTAA
1 ACCCTAA
1420 ACCCTAA
1 ACCCTAA
1427 ACCCTAA
1 ACCCTAA
1434 ACCCTAA
1 ACCCTAA
1441 A-CCTAA
1 ACCCTAA
1447 ACCCTAA
1 ACCCTAA
1454 ACCCTAA
1 ACCCTAA
1461 A-CCTAA
1 ACCCTAA
*
1467 ACCCGAA
1 ACCCTAA
1474 A-CCTAA
1 ACCCTAA
1480 ACCCTAA
1 ACCCTAA
1487 ACCCT-A
1 ACCCTAA
1493 ACCCT-A
1 ACCCTAA
1499 ACCCTAA
1 ACCCTAA
1506 ACCCTAA
1 ACCCTAA
1513 A-CCTAA
1 ACCCTAA
1519 ACCCTAAA
1 ACCCT-AA
1527 ACCCTAA
1 ACCCTAA
1534 ACCCT-A
1 ACCCTAA
1540 ACCCTAA
1 ACCCTAA
1547 ACCCTAAA
1 ACCCT-AA
1555 ACCC-AA
1 ACCCTAA
1561 ACCCT-A
1 ACCCTAA
1567 ACCCTAA
1 ACCCTAA
1574 ACCCTAA
1 ACCCTAA
1581 ACCCTAA
1 ACCCTAA
1588 ACCCTAA
1 ACCCTAA
1595 ACCCTAA
1 ACCCTAA
1602 ACCC-AA
1 ACCCTAA
1608 ACCCTAA
1 ACCCTAA
1615 ACCCT-A
1 ACCCTAA
1621 A-CCTAA
1 ACCCTAA
1627 ACCCTAA
1 ACCCTAA
1634 ACCCTAA
1 ACCCTAA
1641 ACCCTAAA
1 ACCCT-AA
1649 ACCCTAA
1 ACCCTAA
1656 ACCCTAA
1 ACCCTAA
1663 ACCCTAA
1 ACCCTAA
*
1670 A---AAA
1 ACCCTAA
1674 ACCCTAA
1 ACCCTAA
1681 ACCCTAA
1 ACCCTAA
1688 ACCCTAA
1 ACCCTAA
1695 ACCCTAA
1 ACCCTAA
*
1702 ACCCGAA
1 ACCCTAA
1709 ACCCTAA
1 ACCCTAA
1716 ACCCTAA
1 ACCCTAA
1723 ACCCTAA
1 ACCCTAA
1730 ACCCTAA
1 ACCCTAA
1737 A-CCTAA
1 ACCCTAA
1743 ACCCTAA
1 ACCCTAA
1750 ACCCTAA
1 ACCCTAA
1757 ACCCTAA
1 ACCCTAA
1764 ACCCTAA
1 ACCCTAA
1771 ACCCTAA
1 ACCCTAA
1778 ACCCTAA
1 ACCCTAA
1785 ACCCTAA
1 ACCCTAA
1792 ACCCTAA
1 ACCCTAA
1799 ACCCTAAA
1 ACCCT-AA
1807 ACCCT-A
1 ACCCTAA
1813 ACCCT-A
1 ACCCTAA
1819 ACCCTAA
1 ACCCTAA
1826 ACCCCTAA
1 A-CCCTAA
1834 ACCCTAA
1 ACCCTAA
*
1841 A-CCGAA
1 ACCCTAA
1847 ACCCT-A
1 ACCCTAA
1853 ACCCTAA
1 ACCCTAA
1860 A-CCTAA
1 ACCCTAA
1866 ACCCT-A
1 ACCCTAA
1872 ACCCTAA
1 ACCCTAA
1879 ACCCTAA
1 ACCCTAA
1886 ACCCTAA
1 ACCCTAA
1893 A-CCTAA
1 ACCCTAA
1899 ACCCTAA
1 ACCCTAA
1906 ACCCT-A
1 ACCCTAA
1912 ACCCTAA
1 ACCCTAA
*
1919 CCCCTAA
1 ACCCTAA
1926 ACCCTAA
1 ACCCTAA
1933 ACCCTAA
1 ACCCTAA
1940 ACCCTAA
1 ACCCTAA
1947 ACCCTAA
1 ACCCTAA
1954 ACCCTAA
1 ACCCTAA
1961 ACCCTAA
1 ACCCTAA
*
1968 ACCCAAA
1 ACCCTAA
1975 ACCCTAA
1 ACCCTAA
1982 ACCCT-A
1 ACCCTAA
1988 ACCCTAA
1 ACCCTAA
1995 ACCCTAA
1 ACCCTAA
2002 ACCCT-A
1 ACCCTAA
2008 ACCC-AA
1 ACCCTAA
*
2014 AACC-AA
1 ACCCTAA
2020 A-CCTAA
1 ACCCTAA
*
2026 ACCCGAA
1 ACCCTAA
2033 ACCCTAA
1 ACCCTAA
2040 ACCCT-A
1 ACCCTAA
2046 ACCCTAA
1 ACCCTAA
2053 ACCCTAA
1 ACCCTAA
2060 ACCCTAA
1 ACCCTAA
2067 ACCCTAA
1 ACCCTAA
2074 ACCCTAA
1 ACCCTAA
*
2081 ACCCGAA
1 ACCCTAA
2088 A-CCTAA
1 ACCCTAA
2094 ACCCTAA
1 ACCCTAA
2101 ACCCTAA
1 ACCCTAA
2108 ACCCTAA
1 ACCCTAA
2115 ACCCT-A
1 ACCCTAA
2121 ACCCTAA
1 ACCCTAA
2128 ACCCT-A
1 ACCCTAA
2134 ACCC-AA
1 ACCCTAA
2140 ACCCTAA
1 ACCCTAA
2147 ACCCTAA
1 ACCCTAA
2154 ACCCTAA
1 ACCCTAA
2161 ACCCTAA
1 ACCCTAA
2168 ACCCT-A
1 ACCCTAA
2174 ACCCTAA
1 ACCCTAA
2181 ACCCT-A
1 ACCCTAA
2187 ACCCTAA
1 ACCCTAA
2194 ACCCT-A
1 ACCCTAA
2200 ACCCTAA
1 ACCCTAA
2207 ACCCT-A
1 ACCCTAA
2213 ACCCTAA
1 ACCCTAA
2220 ACCCTAA
1 ACCCTAA
2227 ACCCTAA
1 ACCCTAA
2234 A-CCTAA
1 ACCCTAA
2240 ACCC--A
1 ACCCTAA
2245 A-CCT-A
1 ACCCTAA
2250 ACCCTAA
1 ACCCTAA
2257 ACCCTAA
1 ACCCTAA
2264 ACCCT-A
1 ACCCTAA
2270 ACCCTAA
1 ACCCTAA
2277 ACCCTAA
1 ACCCTAA
2284 ACCCTAA
1 ACCCTAA
2291 ACCCT-A
1 ACCCTAA
2297 ACCCT-A
1 ACCCTAA
2303 A-CCTAA
1 ACCCTAA
2309 ACCCTAA
1 ACCCTAA
2316 ACCCTAA
1 ACCCTAA
2323 ACCCTAA
1 ACCCTAA
2330 ACCCT-A
1 ACCCTAA
2336 ACCCTAA
1 ACCCTAA
2343 ACCCTAA
1 ACCCTAA
2350 ACCCTAA
1 ACCCTAA
2357 ACCCTAA
1 ACCCTAA
2364 A-CC--A
1 ACCCTAA
2368 ACCCTAA
1 ACCCTAA
2375 ACCCTAA
1 ACCCTAA
2382 ACCCTAA
1 ACCCTAA
2389 ACCCTAA
1 ACCCTAA
2396 ACCCTAA
1 ACCCTAA
2403 ACCCCTAA
1 A-CCCTAA
2411 A-CCTAA
1 ACCCTAA
2417 ACCCTAAAAA
1 ACCCT---AA
2427 ACCCT-A
1 ACCCTAA
2433 A-CCTAA
1 ACCCTAA
2439 ACCCTAA
1 ACCCTAA
2446 ACCCTAA
1 ACCCTAA
2453 ACCCTAA
1 ACCCTAA
2460 ACCCTAA
1 ACCCTAA
2467 ACCCTAA
1 ACCCTAA
2474 ACCCTAA
1 ACCCTAA
2481 ACCCTAA
1 ACCCTAA
2488 ACCCTAA
1 ACCCTAA
2495 ACCCTAA
1 ACCCTAA
2502 ACCCT-A
1 ACCCTAA
2508 ACCCTAA
1 ACCCTAA
2515 ACCCTAA
1 ACCCTAA
2522 ACCCTAA
1 ACCCTAA
2529 ACCCT-A
1 ACCCTAA
2535 ACCCTAA
1 ACCCTAA
2542 ACCCT-A
1 ACCCTAA
2548 ACCCTAA
1 ACCCTAA
2555 ACCCTAA
1 ACCCTAA
2562 ACCCTAA
1 ACCCTAA
2569 ACCCTAA
1 ACCCTAA
2576 ACCCTAA
1 ACCCTAA
2583 ACCCTAA
1 ACCCTAA
2590 ACCCTAA
1 ACCCTAA
2597 ACCCT-A
1 ACCCTAA
2603 ACCCTAA
1 ACCCTAA
2610 ACCCT-A
1 ACCCTAA
2616 ACCCTAA
1 ACCCTAA
2623 ACCCT-A
1 ACCCTAA
2629 ACCCTAA
1 ACCCTAA
2636 ACCCT-A
1 ACCCTAA
2642 ACCCTAA
1 ACCCTAA
2649 ACCCTAA
1 ACCCTAA
2656 ACCCTAA
1 ACCCTAA
2663 ACCCTAA
1 ACCCTAA
2670 ACCCTAA
1 ACCCTAA
2677 A-CCTAA
1 ACCCTAA
2683 ACCCTAA
1 ACCCTAA
2690 ACCCT-A
1 ACCCTAA
2696 ACCCTAA
1 ACCCTAA
2703 ACCCT-A
1 ACCCTAA
2709 A-CCT-A
1 ACCCTAA
2714 ACCCTAA
1 ACCCTAA
2721 ACCCT-A
1 ACCCTAA
2727 ACCCTAA
1 ACCCTAA
2734 ACCCTAA
1 ACCCTAA
2741 ACCCTAA
1 ACCCTAA
2748 ACCCTAA
1 ACCCTAA
2755 ACCCTAA
1 ACCCTAA
2762 ACCCTAA
1 ACCCTAA
2769 ACCCT-A
1 ACCCTAA
2775 ACCCTAA
1 ACCCTAA
2782 ACCCTAA
1 ACCCTAA
2789 ACCCTAA
1 ACCCTAA
2796 ACCCTAA
1 ACCCTAA
2803 ACCCT-A
1 ACCCTAA
2809 ACCCTAA
1 ACCCTAA
2816 ACCCTAA
1 ACCCTAA
2823 ACCCTAA
1 ACCCTAA
2830 ACCCTAA
1 ACCCTAA
2837 ACCCTAA
1 ACCCTAA
2844 ACCCTAA
1 ACCCTAA
2851 ACCCTAA
1 ACCCTAA
2858 ACCCT-A
1 ACCCTAA
2864 ACCCTAA
1 ACCCTAA
2871 ACCCTAA
1 ACCCTAA
2878 ACCCT-A
1 ACCCTAA
2884 ACCCT--
1 ACCCTAA
2889 ACCCTAA
1 ACCCTAA
2896 A-CCT--
1 ACCCTAA
2900 ACCCTAA
1 ACCCTAA
2907 A-CCTAA
1 ACCCTAA
2913 A-CCTAA
1 ACCCTAA
2919 ACCCT-A
1 ACCCTAA
2925 A-CCTAA
1 ACCCTAA
2931 ACCCTAA
1 ACCCTAA
2938 ACCCTAA
1 ACCCTAA
2945 ACCCTAA
1 ACCCTAA
2952 ACCCTAA
1 ACCCTAA
2959 ACCCTAA
1 ACCCTAA
2966 ACCCT-A
1 ACCCTAA
2972 ACCCTAA
1 ACCCTAA
2979 ACCCTAA
1 ACCCTAA
2986 ACCCTAA
1 ACCCTAA
2993 ACCCTAA
1 ACCCTAA
3000 ACCCTAA
1 ACCCTAA
3007 A-CCTAA
1 ACCCTAA
3013 ACCCTAAAA
1 ACCCT--AA
3022 ACCCTAA
1 ACCCTAA
3029 ACCCTAA
1 ACCCTAA
3036 ACCCT-A
1 ACCCTAA
3042 ACCCTAA
1 ACCCTAA
3049 ACCCT-A
1 ACCCTAA
3055 ACCCTAA
1 ACCCTAA
3062 ACCCTAA
1 ACCCTAA
3069 ACCCTAA
1 ACCCTAA
3076 ACCCTAAAAA
1 ACCCT---AA
3086 ACCCTAA
1 ACCCTAA
3093 ACCCTAA
1 ACCCTAA
3100 ACCCTAA
1 ACCCTAA
3107 ACCCT-A
1 ACCCTAA
3113 ACCCTAAA
1 ACCCT-AA
3121 ACCCTAA
1 ACCCTAA
3128 A-CCTAA
1 ACCCTAA
3134 ACCCTAA
1 ACCCTAA
3141 ACCCT-A
1 ACCCTAA
3147 ACCCTAA
1 ACCCTAA
3154 ACCCTAA
1 ACCCTAA
3161 ACCCTAA
1 ACCCTAA
*
3168 ACCC-GA
1 ACCCTAA
3174 A-CCTAA
1 ACCCTAA
3180 ACCCTAA
1 ACCCTAA
3187 ACCCTAA
1 ACCCTAA
3194 ACCCTAA
1 ACCCTAA
3201 ACCCT-A
1 ACCCTAA
3207 ACCCTAA
1 ACCCTAA
3214 ACCCTAA
1 ACCCTAA
3221 ACCCTAA
1 ACCCTAA
3228 ACCCTAA
1 ACCCTAA
3235 ACCCTAAAAA
1 ACCCT---AA
3245 ACCCTAA
1 ACCCTAA
3252 ACCCTAA
1 ACCCTAA
3259 ACCCTAA
1 ACCCTAA
3266 ACCCTAA
1 ACCCTAA
3273 ACCCTAA
1 ACCCTAA
3280 ACCCTAA
1 ACCCTAA
3287 ACCC-AA
1 ACCCTAA
3293 ACCCTAA
1 ACCCTAA
3300 ACCCTAA
1 ACCCTAA
3307 ACCCTAA
1 ACCCTAA
3314 A-CCTAA
1 ACCCTAA
3320 ACCCTAA
1 ACCCTAA
3327 ACCCTAA
1 ACCCTAA
3334 ACCCTAA
1 ACCCTAA
3341 ACCCT-A
1 ACCCTAA
3347 ACCCT--
1 ACCCTAA
3352 ACCCTAA
1 ACCCTAA
3359 ACCCTAA
1 ACCCTAA
3366 A-CCT-A
1 ACCCTAA
3371 ACCCTAA
1 ACCCTAA
3378 ACCCTAA
1 ACCCTAA
3385 ACCCTAA
1 ACCCTAA
3392 ACCCTAA
1 ACCCTAA
3399 ACCCTAA
1 ACCCTAA
3406 ACCCTAA
1 ACCCTAA
3413 ACCCTAA
1 ACCCTAA
3420 ACCCTAA
1 ACCCTAA
3427 ACCCT-A
1 ACCCTAA
3433 ACCCTAA
1 ACCCTAA
3440 ACCCTAA
1 ACCCTAA
3447 ACCCTAA
1 ACCCTAA
3454 ACCCTAA
1 ACCCTAA
3461 ACCCTAA
1 ACCCTAA
3468 ACCCTAA
1 ACCCTAA
3475 ACCCTAA
1 ACCCTAA
3482 ACCCTAA
1 ACCCTAA
3489 A-CCTAA
1 ACCCTAA
3495 ACCCTAA
1 ACCCTAA
3502 ACCCT-A
1 ACCCTAA
3508 ACCCTAA
1 ACCCTAA
3515 ACCCTAA
1 ACCCTAA
3522 ACCCT-A
1 ACCCTAA
3528 ACCCTAA
1 ACCCTAA
3535 ACCCTAA
1 ACCCTAA
3542 ACCCTAA
1 ACCCTAA
3549 ACCCTAA
1 ACCCTAA
3556 ACCCTAA
1 ACCCTAA
3563 ACCCTAA
1 ACCCTAA
3570 ACCCTAA
1 ACCCTAA
3577 ACCCTAA
1 ACCCTAA
3584 A-CCTAA
1 ACCCTAA
3590 ACCCT-A
1 ACCCTAA
3596 ACCCTAA
1 ACCCTAA
3603 ACCCT-A
1 ACCCTAA
3609 ACCCTAA
1 ACCCTAA
3616 ACCCT-A
1 ACCCTAA
3622 ACCCTAA
1 ACCCTAA
3629 ACCCT-A
1 ACCCTAA
3635 ACCCTAAA
1 ACCCT-AA
3643 ACCCT-A
1 ACCCTAA
3649 ACCCT--
1 ACCCTAA
3654 A-CCTAA
1 ACCCTAA
3660 ACCC--A
1 ACCCTAA
3665 ACCCTAA
1 ACCCTAA
3672 ACCCTAA
1 ACCCTAA
3679 ACCCTAA
1 ACCCTAA
3686 ACCCTAAA
1 ACCCT-AA
3694 ACCC-AA
1 ACCCTAA
3700 ACCCT-A
1 ACCCTAA
3706 A-CCTAA
1 ACCCTAA
3712 ACCCTAA
1 ACCCTAA
3719 ACCCT-A
1 ACCCTAA
3725 ACCCT-A
1 ACCCTAA
3731 ACCCTAA
1 ACCCTAA
3738 A-CCTAA
1 ACCCTAA
3744 A-CCTAA
1 ACCCTAA
3750 ACCCTAA
1 ACCCTAA
3757 ACCCTAA
1 ACCCTAA
3764 ACCCTAA
1 ACCCTAA
3771 ACCCTAA
1 ACCCTAA
3778 ACCCT-A
1 ACCCTAA
3784 ACCCT-A
1 ACCCTAA
3790 ACCCTAA
1 ACCCTAA
3797 ACCCTAA
1 ACCCTAA
3804 ACCCTAA
1 ACCCTAA
3811 ACCCTAA
1 ACCCTAA
3818 ACCCT-A
1 ACCCTAA
3824 ACCCTAAA
1 ACCCT-AA
3832 ACCCTAA
1 ACCCTAA
3839 ACCCTAA
1 ACCCTAA
3846 ACCCTAA
1 ACCCTAA
3853 ACCCTAA
1 ACCCTAA
3860 ACCCTAA
1 ACCCTAA
3867 A-CCTAA
1 ACCCTAA
3873 ACCCCTAA
1 A-CCCTAA
3881 ACCCCTAA
1 A-CCCTAA
3889 ACCCTAA
1 ACCCTAA
3896 ACCCTAA
1 ACCCTAA
3903 ACCCTAA
1 ACCCTAA
3910 ACCCT-A
1 ACCCTAA
3916 ACCCT-A
1 ACCCTAA
3922 ACCCTAA
1 ACCCTAA
3929 ACCCT-A
1 ACCCTAA
3935 A-CCTAA
1 ACCCTAA
3941 ACCCT-A
1 ACCCTAA
3947 ACCCTAA
1 ACCCTAA
3954 ACCCTAA
1 ACCCTAA
3961 ACCCTAA
1 ACCCTAA
*
3968 ACCC--G
1 ACCCTAA
3973 ACCCT-A
1 ACCCTAA
3979 ACCCTAA
1 ACCCTAA
3986 ACCCTAA
1 ACCCTAA
*
3993 ACCCCCAA
1 A-CCCTAA
4001 ACCCTAA
1 ACCCTAA
4008 ACCCTAA
1 ACCCTAA
4015 ACCCTAA
1 ACCCTAA
4022 ACCCTAA
1 ACCCTAA
4029 ACCCT-A
1 ACCCTAA
4035 ACCCTAA
1 ACCCTAA
4042 ACCCTAA
1 ACCCTAA
4049 ACCCTAA
1 ACCCTAA
4056 ACCCTAA
1 ACCCTAA
4063 ACCCT-A
1 ACCCTAA
4069 ACCCT--
1 ACCCTAA
4074 ACCCTAAA
1 ACCCT-AA
4082 ACCCT-A
1 ACCCTAA
4088 ACCCTAA
1 ACCCTAA
4095 ACCCTAA
1 ACCCTAA
*
4102 CCCCTAA
1 ACCCTAA
4109 ACCCTAA
1 ACCCTAA
4116 ACCCTAA
1 ACCCTAA
4123 A-CCTAA
1 ACCCTAA
4129 ACCCTAA
1 ACCCTAA
4136 ACCCT-A
1 ACCCTAA
4142 ACCCTAA
1 ACCCTAA
4149 ACCCTAA
1 ACCCTAA
4156 ACCCTAA
1 ACCCTAA
4163 ACCCT-A
1 ACCCTAA
4169 ACCCTAA
1 ACCCTAA
4176 ACCCTAA
1 ACCCTAA
4183 ACCCTAA
1 ACCCTAA
4190 ACCCT--
1 ACCCTAA
4195 ACCCTAA
1 ACCCTAA
4202 ACCCTAA
1 ACCCTAA
4209 ACCCTAA
1 ACCCTAA
4216 ACCCTAA
1 ACCCTAA
4223 ACCCTAA
1 ACCCTAA
4230 ACCCTAA
1 ACCCTAA
4237 ACCCTAA
1 ACCCTAA
*
4244 ACCCCCCAA
1 A--CCCTAA
4253 ACCCTAA
1 ACCCTAA
4260 ACCCTAA
1 ACCCTAA
4267 ACCCTAA
1 ACCCTAA
4274 ACCCTAA
1 ACCCTAA
4281 A-CCT-A
1 ACCCTAA
4286 A-CCT-A
1 ACCCTAA
4291 ACCCTAA
1 ACCCTAA
4298 ACCCTAA
1 ACCCTAA
*
4305 ACCCTAC
1 ACCCTAA
4312 ACCCTAA
1 ACCCTAA
4319 ACCCTAA
1 ACCCTAA
4326 ACCCTAA
1 ACCCTAA
4333 A-CCTAA
1 ACCCTAA
4339 ACCCT-A
1 ACCCTAA
*
4345 ACCCCAA
1 ACCCTAA
4352 ACCCTAA
1 ACCCTAA
4359 ACCCTAA
1 ACCCTAA
4366 ACCCTAA
1 ACCCTAA
4373 ACCCTAA
1 ACCCTAA
4380 ACCCTAA
1 ACCCTAA
4387 ACCCT-A
1 ACCCTAA
4393 ACCCTAA
1 ACCCTAA
4400 ACCCTAA
1 ACCCTAA
4407 ACCCTAA
1 ACCCTAA
4414 ACCCT-A
1 ACCCTAA
4420 ACCCTAA
1 ACCCTAA
4427 ACCCTAA
1 ACCCTAA
4434 ACCCTAA
1 ACCCTAA
4441 ACCCTAA
1 ACCCTAA
4448 ACCCTAA
1 ACCCTAA
4455 ACCCT-A
1 ACCCTAA
4461 ACCCT-A
1 ACCCTAA
4467 ACCCTAA
1 ACCCTAA
4474 ACCCTAA
1 ACCCTAA
4481 ACCCTAA
1 ACCCTAA
4488 ACCCT-A
1 ACCCTAA
4494 ACCCTAA
1 ACCCTAA
4501 ACCCTAA
1 ACCCTAA
4508 ACCCTAA
1 ACCCTAA
4515 ACCCTAA
1 ACCCTAA
4522 ACCCTAA
1 ACCCTAA
4529 ACCCTAA
1 ACCCTAA
4536 ACCCT-A
1 ACCCTAA
4542 ACCCTAA
1 ACCCTAA
4549 ACCCTAA
1 ACCCTAA
4556 ACCCTAA
1 ACCCTAA
4563 ACCCTAA
1 ACCCTAA
4570 ACCCTAA
1 ACCCTAA
4577 ACCCTAA
1 ACCCTAA
4584 ACCCTAA
1 ACCCTAA
4591 ACCCT-A
1 ACCCTAA
4597 ACCCTAA
1 ACCCTAA
4604 ACCCTAA
1 ACCCTAA
4611 ACCCTAA
1 ACCCTAA
4618 ACCCTAA
1 ACCCTAA
4625 ACCCT-A
1 ACCCTAA
4631 ACCCT-A
1 ACCCTAA
4637 ACCCTAA
1 ACCCTAA
4644 ACCCTAA
1 ACCCTAA
4651 ACCCT-A
1 ACCCTAA
4657 ACCCTAA
1 ACCCTAA
4664 ACCCTAA
1 ACCCTAA
4671 ACCCT-A
1 ACCCTAA
4677 ACCCT-A
1 ACCCTAA
4683 ACCCTAA
1 ACCCTAA
4690 ACCCTAA
1 ACCCTAA
4697 ACCCTAA
1 ACCCTAA
4704 A-CCTAA
1 ACCCTAA
4710 ACCCTAA
1 ACCCTAA
4717 ACCCTAA
1 ACCCTAA
4724 ACCCT-A
1 ACCCTAA
4730 ACCCTAA
1 ACCCTAA
4737 ACCCTAA
1 ACCCTAA
4744 ACCCTAA
1 ACCCTAA
4751 ACCCTAAA
1 ACCCT-AA
4759 ACCCTAA
1 ACCCTAA
4766 ACCCT-A
1 ACCCTAA
4772 ACCCT-A
1 ACCCTAA
4778 ACCCT-A
1 ACCCTAA
4784 ACCCT-A
1 ACCCTAA
4790 ACCCTAA
1 ACCCTAA
4797 ACCCTAA
1 ACCCTAA
*
4804 GCCCTAA
1 ACCCTAA
4811 ACCCTAA
1 ACCCTAA
4818 ACCCTAA
1 ACCCTAA
*
4825 GCCCTAA
1 ACCCTAA
*
4832 GCCCT-A
1 ACCCTAA
4838 ACCCTAA
1 ACCCTAA
4845 ACCCTAA
1 ACCCTAA
4852 ACCCTAA
1 ACCCTAA
4859 ACCCTAA
1 ACCCTAA
4866 A-CCTAA
1 ACCCTAA
4872 ACCCTAA
1 ACCCTAA
4879 ACCCTAA
1 ACCCTAA
4886 ACCCTAA
1 ACCCTAA
*
4893 GCCCTAA
1 ACCCTAA
*
4900 GCCCTAA
1 ACCCTAA
*
4907 GCCCTAA
1 ACCCTAA
*
4914 GCCCT-A
1 ACCCTAA
4920 ACCCTAA
1 ACCCTAA
4927 ACCCT-A
1 ACCCTAA
4933 ACCCT-A
1 ACCCTAA
4939 ACCCT-A
1 ACCCTAA
4945 A-CCTAA
1 ACCCTAA
*
4951 GCCCTAA
1 ACCCTAA
*
4958 GCCCTAA
1 ACCCTAA
*
4965 GCCCTAA
1 ACCCTAA
*
4972 GCCCT-A
1 ACCCTAA
*
4978 AGCCTAA
1 ACCCTAA
*
4985 GCCCTAA
1 ACCCTAA
*
4992 GCCCTAA
1 ACCCTAA
*
4999 GCCCTAA
1 ACCCTAA
*
5006 GCCCTAA
1 ACCCTAA
*
5013 GCCCTAA
1 ACCCTAA
*
5020 GCCCTAA
1 ACCCTAA
*
5027 GCCCTAA
1 ACCCTAA
5034 ACCCTAA
1 ACCCTAA
*
5041 GCCCTAA
1 ACCCTAA
*
5048 GCCCT-A
1 ACCCTAA
*
5054 AGCCTAA
1 ACCCTAA
*
5061 GCCCTAA
1 ACCCTAA
*
5068 GCCCT-A
1 ACCCTAA
5074 ACCCTAA
1 ACCCTAA
*
5081 GCCCTAA
1 ACCCTAA
*
5088 GCCCT-A
1 ACCCTAA
5094 ACCCT-A
1 ACCCTAA
5100 ACCCTAA
1 ACCCTAA
*
5107 GCCCTAA
1 ACCCTAA
*
5114 GCCCTAA
1 ACCCTAA
*
5121 GCCCT-A
1 ACCCTAA
5127 ACCCTAA
1 ACCCTAA
*
5134 GCCCTAA
1 ACCCTAA
5141 ACCCTAA
1 ACCCTAA
*
5148 GCCCT-A
1 ACCCTAA
5154 ACCCTAA
1 ACCCTAA
*
5161 GCCCTAA
1 ACCCTAA
*
5168 GCCCTAA
1 ACCCTAA
*
5175 GCCCTAA
1 ACCCTAA
*
5182 GCCCTAA
1 ACCCTAA
*
5189 GCCCT-A
1 ACCCTAA
*
5195 GCCCT-A
1 ACCCTAA
5201 A-CCT-A
1 ACCCTAA
5206 ACCCTAA
1 ACCCTAA
*
5213 GCCCTAA
1 ACCCTAA
*
5220 GCCCTAA
1 ACCCTAA
*
5227 GCCCTAA
1 ACCCTAA
*
5234 GCCCCCTAA
1 --ACCCTAA
*
5243 GCCCTAA
1 ACCCTAA
*
5250 GCCCTAA
1 ACCCTAA
*
5257 GCCCTAA
1 ACCCTAA
5264 ACCCTAA
1 ACCCTAA
*
5271 GCCCT--
1 ACCCTAA
5276 ACCCTAA
1 ACCCTAA
5283 ACCCTAA
1 ACCCTAA
*
5290 GCCCTAA
1 ACCCTAA
*
5297 GCCCTAA
1 ACCCTAA
*
5304 GCCCTAA
1 ACCCTAA
*
5311 GCCCT-A
1 ACCCTAA
5317 ACCCT-A
1 ACCCTAA
5323 A-CCTAA
1 ACCCTAA
*
5329 GCCCTAA
1 ACCCTAA
*
5336 GCCCTAA
1 ACCCTAA
*
5343 GCCCTAA
1 ACCCTAA
*
5350 GCCCT-A
1 ACCCTAA
*
5356 GCCCTAA
1 ACCCTAA
*
5363 GCCCCCCTAA
1 ---ACCCTAA
*
5373 GCCCTAA
1 ACCCTAA
*
5380 GCCCTAA
1 ACCCTAA
*
5387 GCCCTAA
1 ACCCTAA
*
5394 GCCCTAA
1 ACCCTAA
*
5401 GCCCTAA
1 ACCCTAA
*
5408 GCCCT-A
1 ACCCTAA
5414 ACCCTAA
1 ACCCTAA
*
5421 GCCCTAA
1 ACCCTAA
*
5428 GCCCTAA
1 ACCCTAA
*
5435 GCCCTAA
1 ACCCTAA
5442 AGCCCT-A
1 A-CCCTAA
5449 ACCCTAA
1 ACCCTAA
*
5456 GCCCT--
1 ACCCTAA
5461 ACCCT-A
1 ACCCTAA
5467 ACCCTAA
1 ACCCTAA
*
5474 GCCCTAA
1 ACCCTAA
*
5481 GCCCTAA
1 ACCCTAA
*
5488 GCCCTAA
1 ACCCTAA
*
5495 GCCCTAA
1 ACCCTAA
*
5502 GCCCTAA
1 ACCCTAA
*
5509 GCCCT-A
1 ACCCTAA
*
5515 AGCCTAA
1 ACCCTAA
*
5522 GCCCTAA
1 ACCCTAA
*
5529 GCCCTAA
1 ACCCTAA
*
5536 GCCCTAA
1 ACCCTAA
*
5543 GCCCTAA
1 ACCCTAA
*
5550 GCCCTAA
1 ACCCTAA
*
5557 GCCCTAA
1 ACCCTAA
*
5564 GCCCTAA
1 ACCCTAA
*
5571 GCCCTAA
1 ACCCTAA
*
5578 GCCCTAA
1 ACCCTAA
*
5585 GCCCTAA
1 ACCCTAA
*
5592 GCCCTAA
1 ACCCTAA
*
5599 GCCCT-A
1 ACCCTAA
5605 ACCCTAA
1 ACCCTAA
*
5612 GCCCTAA
1 ACCCTAA
*
5619 GCCCTAA
1 ACCCTAA
*
5626 GCCCT-A
1 ACCCTAA
*
5632 AGCCTAA
1 ACCCTAA
*
5639 GCCCTAA
1 ACCCTAA
*
5646 GCCCTAA
1 ACCCTAA
*
5653 GCCCTAA
1 ACCCTAA
*
5660 GCCCTAA
1 ACCCTAA
*
5667 GCCCTAA
1 ACCCTAA
*
5674 GCCCTAA
1 ACCCTAA
*
5681 GCCCTAA
1 ACCCTAA
*
5688 GCCCTAA
1 ACCCTAA
*
5695 GCCCTAA
1 ACCCTAA
*
5702 GCCCTAA
1 ACCCTAA
*
5709 GCCCTAA
1 ACCCTAA
*
5716 GCCCTAA
1 ACCCTAA
*
5723 GCCCTAA
1 ACCCTAA
*
5730 GCCCTAA
1 ACCCTAA
*
5737 GCCCT-A
1 ACCCTAA
*
5743 AGCCT--
1 ACCCTAA
5748 ACCCTAA
1 ACCCTAA
*
5755 GCCCTAA
1 ACCCTAA
*
5762 GCCCTAA
1 ACCCTAA
*
5769 GCCCT-A
1 ACCCTAA
*
5775 AGCCTAA
1 ACCCTAA
*
5782 GCCCT-A
1 ACCCTAA
*
5788 AGCCTAA
1 ACCCTAA
*
5795 GCCCTAA
1 ACCCTAA
*
5802 GCCCTAA
1 ACCCTAA
*
5809 GCCCTAA
1 ACCCTAA
*
5816 GCCCTAA
1 ACCCTAA
*
5823 GCCCTAA
1 ACCCTAA
*
5830 GCCCTAA
1 ACCCTAA
*
5837 GCCCTAA
1 ACCCTAA
*
5844 GCCCTAA
1 ACCCTAA
*
5851 GCCCTAA
1 ACCCTAA
*
5858 GCCCTAA
1 ACCCTAA
*
5865 GCCCTAAGCA
1 ACCCT-A--A
5875 AGCCCTAA
1 A-CCCTAA
*
5883 GCCCTAA
1 ACCCTAA
*
5890 GCCCTAA
1 ACCCTAA
*
5897 GCCCTAA
1 ACCCTAA
*
5904 GCCCTAA
1 ACCCTAA
*
5911 GCCCTAA
1 ACCCTAA
*
5918 GCCCT-A
1 ACCCTAA
5924 ACCCTAA
1 ACCCTAA
*
5931 GCCCT-A
1 ACCCTAA
*
5937 AGCCTAA
1 ACCCTAA
*
5944 GCCCTAA
1 ACCCTAA
*
5951 GCCCTAA
1 ACCCTAA
*
5958 GCCCTAA
1 ACCCTAA
*
5965 GCCCTAA
1 ACCCTAA
*
5972 GCCCTAA
1 ACCCTAA
*
5979 GCCCTAA
1 ACCCTAA
*
5986 GCCCTAA
1 ACCCTAA
*
5993 GCCCTAA
1 ACCCTAA
*
6000 GCCCTAA
1 ACCCTAA
*
6007 GCCCTAA
1 ACCCTAA
*
6014 GCCCTAA
1 ACCCTAA
*
6021 GCCCTAA
1 ACCCTAA
*
6028 GCCCT-A
1 ACCCTAA
*
6034 AGCCTAA
1 ACCCTAA
*
6041 GCCCTAA
1 ACCCTAA
*
6048 GCCCTAA
1 ACCCTAA
*
6055 GCCCTAA
1 ACCCTAA
*
6062 GCCCTAA
1 ACCCTAA
*
6069 GCCCTAA
1 ACCCTAA
*
6076 GCCCTAA
1 ACCCTAA
*
6083 GCCCT-A
1 ACCCTAA
6089 ACCCTAA
1 ACCCTAA
*
6096 GCCCTAA
1 ACCCTAA
*
6103 GCCCTAA
1 ACCCTAA
*
6110 GCCCTAA
1 ACCCTAA
*
6117 GCCCTAA
1 ACCCTAA
*
6124 GCCCTAA
1 ACCCTAA
*
6131 GCCCTAA
1 ACCCTAA
*
6138 GCCCTAA
1 ACCCTAA
*
6145 GCCCT-A
1 ACCCTAA
6151 ACCCTAA
1 ACCCTAA
*
6158 GCCCTAA
1 ACCCTAA
*
6165 GCCCTAA
1 ACCCTAA
*
6172 GCCCTAATA
1 ACCCT-A-A
6181 AGCCCTAA
1 A-CCCTAA
*
6189 GCCCTAA
1 ACCCTAA
*
6196 GCCCTAA
1 ACCCTAA
*
6203 GCCCTAA
1 ACCCTAA
*
6210 GCCCTAA
1 ACCCTAA
*
6217 GCCCTAA
1 ACCCTAA
*
6224 GCCCT-A
1 ACCCTAA
6230 ACCCT-A
1 ACCCTAA
6236 ACCCTAA
1 ACCCTAA
*
6243 GCCCT-A
1 ACCCTAA
6249 ACCCT-A
1 ACCCTAA
6255 ACCCTAA
1 ACCCTAA
*
6262 GCCCTAA
1 ACCCTAA
*
6269 GCCCTAA
1 ACCCTAA
*
6276 GCCCTAA
1 ACCCTAA
*
6283 GCCCTAA
1 ACCCTAA
*
6290 GCCCTAA
1 ACCCTAA
*
6297 GCCCTAA
1 ACCCTAA
*
6304 GCCCTAA
1 ACCCTAA
*
6311 GCCCT-A
1 ACCCTAA
6317 ACCCT-A
1 ACCCTAA
6323 ACCCT-A
1 ACCCTAA
6329 ACCCTAA
1 ACCCTAA
*
6336 GCCCT-A
1 ACCCTAA
6342 ACCCTAA
1 ACCCTAA
*
6349 GCCCTAA
1 ACCCTAA
*
6356 GCCCTAA
1 ACCCTAA
*
6363 GCCCT-A
1 ACCCTAA
6369 ACCCT-A
1 ACCCTAA
6375 ACCCTAA
1 ACCCTAA
6382 ACCCTAA
1 ACCCTAA
*
6389 GCCCT-A
1 ACCCTAA
6395 A-CCT-A
1 ACCCTAA
6400 ACCCTAA
1 ACCCTAA
6407 ACCCTAA
1 ACCCTAA
*
6414 GCCCTAA
1 ACCCTAA
*
6421 GCCCTAA
1 ACCCTAA
6428 ACCCT-A
1 ACCCTAA
6434 A-CCTAA
1 ACCCTAA
*
6440 GCCCT-A
1 ACCCTAA
6446 ACCCT-A
1 ACCCTAA
6452 ACCCT-A
1 ACCCTAA
6458 ACCCTAA
1 ACCCTAA
6465 ACCCTAA
1 ACCCTAA
6472 ACCCTAA
1 ACCCTAA
6479 ACCCT-A
1 ACCCTAA
6485 ACCCTAA
1 ACCCTAA
6492 ACCCT-A
1 ACCCTAA
6498 ACCCTAA
1 ACCCTAA
6505 ACCCTAA
1 ACCCTAA
6512 ACCCT-A
1 ACCCTAA
6518 ACCCTAA
1 ACCCTAA
6525 ACCCTAA
1 ACCCTAA
6532 ACCCT-A
1 ACCCTAA
6538 ACCCTAA
1 ACCCTAA
6545 ACCCTAA
1 ACCCTAA
6552 ACCCTAA
1 ACCCTAA
6559 ACCCTAA
1 ACCCTAA
6566 ACCCCT-A
1 A-CCCTAA
6573 ACCCTAA
1 ACCCTAA
6580 ACCCTAA
1 ACCCTAA
6587 ACCCTAA
1 ACCCTAA
6594 ACCCT-A
1 ACCCTAA
6600 ACCCTAA
1 ACCCTAA
6607 ACCCTAA
1 ACCCTAA
6614 ACCCT-A
1 ACCCTAA
6620 ACCCTAA
1 ACCCTAA
6627 ACCCTAA
1 ACCCTAA
6634 ACCCT-A
1 ACCCTAA
6640 ACCCTAA
1 ACCCTAA
6647 ACCCTAA
1 ACCCTAA
6654 ACCCTAA
1 ACCCTAA
6661 ACCCTAA
1 ACCCTAA
6668 ACCCTAA
1 ACCCTAA
6675 ACCCTAA
1 ACCCTAA
6682 ACCCT-A
1 ACCCTAA
6688 ACCCT-A
1 ACCCTAA
6694 ACCCTAA
1 ACCCTAA
6701 ACCCTAA
1 ACCCTAA
6708 ACCCTAA
1 ACCCTAA
6715 ACCCTAA
1 ACCCTAA
6722 ACCCTAA
1 ACCCTAA
6729 ACCCTAA
1 ACCCTAA
6736 ACCCTAA
1 ACCCTAA
6743 ACCCTAA
1 ACCCTAA
6750 ACCCTAA
1 ACCCTAA
6757 ACCCT-A
1 ACCCTAA
6763 ACCCT--
1 ACCCTAA
6768 ACCCTAA
1 ACCCTAA
6775 ACCCTAA
1 ACCCTAA
6782 ACCCTAA
1 ACCCTAA
6789 ACCCTAA
1 ACCCTAA
6796 ACCCTAA
1 ACCCTAA
6803 ACCCTAA
1 ACCCTAA
6810 ACCCTAA
1 ACCCTAA
6817 ACCCTAA
1 ACCCTAA
6824 A-CCT-A
1 ACCCTAA
6829 ACCCTAA
1 ACCCTAA
6836 ACCCTAA
1 ACCCTAA
6843 ACCCT-A
1 ACCCTAA
6849 ACCCTAA
1 ACCCTAA
6856 ACCCTAA
1 ACCCTAA
6863 ACCCTAA
1 ACCCTAA
6870 ACCCTAA
1 ACCCTAA
6877 ACCCTAA
1 ACCCTAA
6884 ACCCTAA
1 ACCCTAA
6891 ACCCTAA
1 ACCCTAA
6898 ACCCTAA
1 ACCCTAA
6905 ACCCT-A
1 ACCCTAA
6911 ACCCTAA
1 ACCCTAA
6918 ACCCTAA
1 ACCCTAA
6925 ACCCTAA
1 ACCCTAA
6932 ACCCTAA
1 ACCCTAA
6939 ACCCTAA
1 ACCCTAA
6946 ACCCTAA
1 ACCCTAA
6953 ACCCTAA
1 ACCCTAA
6960 ACCCTAA
1 ACCCTAA
6967 ACCCTAA
1 ACCCTAA
6974 ACCCTAA
1 ACCCTAA
6981 ACCCTAA
1 ACCCTAA
6988 ACCCTAA
1 ACCCTAA
6995 ACCCTAA
1 ACCCTAA
7002 ACCCTAA
1 ACCCTAA
7009 ACCCTAA
1 ACCCTAA
7016 ACCCT-A
1 ACCCTAA
7022 ACCCTAA
1 ACCCTAA
7029 ACCCTAA
1 ACCCTAA
7036 ACCCTAA
1 ACCCTAA
7043 ACCCTAA
1 ACCCTAA
7050 ACCCTAA
1 ACCCTAA
7057 A-CCTAA
1 ACCCTAA
7063 ACCCTAA
1 ACCCTAA
7070 ACCCTAA
1 ACCCTAA
7077 ACCCTAA
1 ACCCTAA
7084 ACCCTAA
1 ACCCTAA
7091 ACCCTAA
1 ACCCTAA
7098 ACCCTAA
1 ACCCTAA
7105 ACCCTAA
1 ACCCTAA
7112 ACCCTAA
1 ACCCTAA
7119 ACCCTAA
1 ACCCTAA
7126 ACCCTAA
1 ACCCTAA
7133 ACCCTAA
1 ACCCTAA
7140 ACCCT-A
1 ACCCTAA
7146 ACCCT-A
1 ACCCTAA
7152 ACCCTAA
1 ACCCTAA
7159 ACCCTAA
1 ACCCTAA
7166 ACCCTAA
1 ACCCTAA
7173 ACCCTAA
1 ACCCTAA
7180 ACCCTAA
1 ACCCTAA
7187 ACCCTAA
1 ACCCTAA
7194 ACCCTAA
1 ACCCTAA
7201 ACCCTAA
1 ACCCTAA
7208 ACCCTAA
1 ACCCTAA
7215 ACCCTAA
1 ACCCTAA
7222 ACCCTAA
1 ACCCTAA
7229 ACCCTAA
1 ACCCTAA
7236 ACCCT--
1 ACCCTAA
7241 A-CCTAA
1 ACCCTAA
7247 ACCCTAA
1 ACCCTAA
7254 ACCCTAA
1 ACCCTAA
7261 ACCCTAA
1 ACCCTAA
7268 ACCCTAA
1 ACCCTAA
7275 ACCCTAA
1 ACCCTAA
7282 ACCCTAA
1 ACCCTAA
7289 ACCCTAA
1 ACCCTAA
7296 ACCCTAA
1 ACCCTAA
7303 ACCCT-A
1 ACCCTAA
7309 ACCCTAA
1 ACCCTAA
7316 ACCCTAA
1 ACCCTAA
7323 ACCCTAA
1 ACCCTAA
7330 ACCCTAAAA
1 ACCCT--AA
*
7339 AACCTAA
1 ACCCTAA
7346 ACCCTAA
1 ACCCTAA
7353 ACCCTAA
1 ACCCTAA
7360 ACCCTAA
1 ACCCTAA
7367 ACCCTAA
1 ACCCTAA
7374 ACCCTAA
1 ACCCTAA
7381 ACCCT-A
1 ACCCTAA
7387 ACCCTAA
1 ACCCTAA
7394 ACCCTAA
1 ACCCTAA
7401 ACCCTAA
1 ACCCTAA
7408 ACCCTAA
1 ACCCTAA
7415 ACCCTAA
1 ACCCTAA
7422 ACCCTAA
1 ACCCTAA
7429 ACCCT-A
1 ACCCTAA
7435 ACCCTAA
1 ACCCTAA
7442 ACCCTAA
1 ACCCTAA
7449 ACCCTAA
1 ACCCTAA
7456 ACCCTAA
1 ACCCTAA
7463 ACCCTAA
1 ACCCTAA
7470 ACCCTAA
1 ACCCTAA
7477 ACCCTAA
1 ACCCTAA
7484 ACCCTAA
1 ACCCTAA
7491 ACCCTAA
1 ACCCTAA
7498 ACCCTAA
1 ACCCTAA
7505 ACCCTAA
1 ACCCTAA
7512 ACCCTAA
1 ACCCTAA
7519 ACCCT-A
1 ACCCTAA
7525 ACCCTAA
1 ACCCTAA
7532 ACCCTAA
1 ACCCTAA
7539 ACCCTAA
1 ACCCTAA
7546 ACCCTAA
1 ACCCTAA
7553 ACCCTAA
1 ACCCTAA
7560 ACCCTAA
1 ACCCTAA
7567 ACCCTAA
1 ACCCTAA
7574 ACCCTAA
1 ACCCTAA
7581 ACCCTAA
1 ACCCTAA
7588 ACCCTAA
1 ACCCTAA
7595 A-CCTAA
1 ACCCTAA
7601 ACCCTAA
1 ACCCTAA
7608 ACCCTAA
1 ACCCTAA
7615 ACCCTAA
1 ACCCTAA
7622 ACCCTAA
1 ACCCTAA
7629 ACCCTAA
1 ACCCTAA
7636 ACCCTAA
1 ACCCTAA
7643 ACCCTAA
1 ACCCTAA
7650 ACCCTAA
1 ACCCTAA
7657 ACCCTAA
1 ACCCTAA
7664 ACCCTAA
1 ACCCTAA
7671 ACCCTAA
1 ACCCTAA
7678 ACCCT-A
1 ACCCTAA
7684 ACCCTAA
1 ACCCTAA
7691 ACCCT-A
1 ACCCTAA
7697 ACCCTAA
1 ACCCTAA
7704 ACCCTAA
1 ACCCTAA
7711 ACCCTAA
1 ACCCTAA
7718 A-CCT-A
1 ACCCTAA
7723 ACCCTAA
1 ACCCTAA
7730 ACCCTAA
1 ACCCTAA
7737 ACCCTAA
1 ACCCTAA
7744 ACCCTAA
1 ACCCTAA
7751 ACCCTAA
1 ACCCTAA
7758 ACCCTAA
1 ACCCTAA
7765 CCTACCCTAA
1 ---ACCCTAA
7775 ACCCTAA
1 ACCCTAA
7782 ACCCTAA
1 ACCCTAA
7789 ACCCTAA
1 ACCCTAA
7796 ACCCTAA
1 ACCCTAA
7803 ACCCTAA
1 ACCCTAA
7810 ACCCTAA
1 ACCCTAA
7817 ACCCT-A
1 ACCCTAA
7823 ACCCTAA
1 ACCCTAA
7830 ACCCTAA
1 ACCCTAA
7837 ACCCTAA
1 ACCCTAA
7844 ACCCTAA
1 ACCCTAA
7851 ACCCTAA
1 ACCCTAA
7858 ACCCTAA
1 ACCCTAA
7865 ACCCTAA
1 ACCCTAA
7872 ACCCTAA
1 ACCCTAA
7879 ACCCTAA
1 ACCCTAA
7886 ACCCT-A
1 ACCCTAA
7892 A-CCT-A
1 ACCCTAA
7897 ACCCTAA
1 ACCCTAA
7904 ACCCTAA
1 ACCCTAA
7911 ACCCTAA
1 ACCCTAA
7918 ACCCTAA
1 ACCCTAA
7925 ACCCTAA
1 ACCCTAA
7932 ACCCTAA
1 ACCCTAA
7939 ACCCTAA
1 ACCCTAA
7946 ACCCTAA
1 ACCCTAA
7953 ACCCTAA
1 ACCCTAA
7960 ACCCTAA
1 ACCCTAA
7967 ACCCTAA
1 ACCCTAA
7974 A-CCTAA
1 ACCCTAA
7980 ACCCTAA
1 ACCCTAA
7987 ACCCTAA
1 ACCCTAA
7994 ACCCTAA
1 ACCCTAA
8001 ACCCTAA
1 ACCCTAA
8008 ACCCTAA
1 ACCCTAA
8015 ACCCTAA
1 ACCCTAA
8022 ACCCTAA
1 ACCCTAA
8029 ACCCTAA
1 ACCCTAA
8036 ACCCTAA
1 ACCCTAA
8043 ACCCTAA
1 ACCCTAA
8050 ACCCTAA
1 ACCCTAA
8057 A-CCTAA
1 ACCCTAA
8063 ACCCTAA
1 ACCCTAA
8070 ACCCTAA
1 ACCCTAA
8077 ACCCT-A
1 ACCCTAA
8083 ACCCTAA
1 ACCCTAA
8090 ACCCTAA
1 ACCCTAA
8097 ACCCTAA
1 ACCCTAA
8104 ACCCTAA
1 ACCCTAA
8111 ACCCTAA
1 ACCCTAA
8118 ACCCTAA
1 ACCCTAA
8125 ACCCTAA
1 ACCCTAA
8132 ACCCTAA
1 ACCCTAA
8139 ACCCTAA
1 ACCCTAA
8146 ACCCTAA
1 ACCCTAA
8153 ACCCTAA
1 ACCCTAA
8160 ACCCTAA
1 ACCCTAA
8167 ACCCTAA
1 ACCCTAA
8174 ACCCTAA
1 ACCCTAA
8181 ACCCTAAA
1 ACCCT-AA
8189 ACCCT-A
1 ACCCTAA
8195 ACCCTAA
1 ACCCTAA
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8202 AACCTAA
1 ACCCTAA
8209 ACCCTAA
1 ACCCTAA
8216 ACCCTAA
1 ACCCTAA
8223 ACCCT-A
1 ACCCTAA
8229 ACCCTAA
1 ACCCTAA
8236 ACCCTAA
1 ACCCTAA
8243 ACCCTAA
1 ACCCTAA
8250 ACCCTAA
1 ACCCTAA
8257 ACCCTAA
1 ACCCTAA
8264 ACCCT-A
1 ACCCTAA
8270 ACCCTAA
1 ACCCTAA
8277 ACCCTAA
1 ACCCTAA
8284 ACCCTAA
1 ACCCTAA
8291 ACCCTAA
1 ACCCTAA
8298 ACCCTAA
1 ACCCTAA
8305 ACCCTAA
1 ACCCTAA
8312 ACCCTAA
1 ACCCTAA
8319 ACCCT-A
1 ACCCTAA
8325 ACCCTAA
1 ACCCTAA
8332 ACCCTAA
1 ACCCTAA
8339 ACCCTAA
1 ACCCTAA
8346 ACCCTAA
1 ACCCTAA
8353 ACCCTAA
1 ACCCTAA
8360 ACCCTAA
1 ACCCTAA
8367 ACCCT-A
1 ACCCTAA
8373 ACCCTAA
1 ACCCTAA
8380 A-CCTAA
1 ACCCTAA
8386 ACCCTAA
1 ACCCTAA
8393 ACCCTAA
1 ACCCTAA
8400 A-CCTAA
1 ACCCTAA
8406 ACCCTAA
1 ACCCTAA
8413 ACCCTAA
1 ACCCTAA
8420 ACCCTAA
1 ACCCTAA
8427 ACCCTAA
1 ACCCTAA
8434 ACCCTAA
1 ACCCTAA
8441 ACCCTAA
1 ACCCTAA
8448 ACCCTAA
1 ACCCTAA
8455 ACCCTAA
1 ACCCTAA
8462 ACCCTAA
1 ACCCTAA
8469 ACCCTAA
1 ACCCTAA
8476 ACCCTAA
1 ACCCTAA
8483 ACCCTAA
1 ACCCTAA
8490 ACCCTAA
1 ACCCTAA
8497 ACCCTAA
1 ACCCTAA
8504 ACCCTAA
1 ACCCTAA
8511 ACCCTAA
1 ACCCTAA
8518 ACCCT-A
1 ACCCTAA
8524 ACCCTAA
1 ACCCTAA
8531 ACCCTAA
1 ACCCTAA
8538 ACCCTAA
1 ACCCTAA
8545 ACCCTAA
1 ACCCTAA
8552 ACCCTAA
1 ACCCTAA
8559 ACCCTAA
1 ACCCTAA
8566 ACCCTAA
1 ACCCTAA
8573 ACCCTAA
1 ACCCTAA
8580 ACCCTAA
1 ACCCTAA
8587 ACCCTAA
1 ACCCTAA
8594 ACCCT-A
1 ACCCTAA
8600 ACCCTAA
1 ACCCTAA
8607 ACCCTAA
1 ACCCTAA
8614 ACCCTAA
1 ACCCTAA
8621 ACCCTAA
1 ACCCTAA
8628 ACCCTAA
1 ACCCTAA
8635 ACCCTAA
1 ACCCTAA
8642 ACCCTAA
1 ACCCTAA
8649 ACCCTAA
1 ACCCTAA
8656 ACCCTAA
1 ACCCTAA
8663 ACCCTAA
1 ACCCTAA
8670 ACCCTAA
1 ACCCTAA
8677 ACCCTAA
1 ACCCTAA
8684 ACCCTAA
1 ACCCTAA
8691 ACCCTAA
1 ACCCTAA
8698 ACCCTAA
1 ACCCTAA
8705 ACCCTAA
1 ACCCTAA
8712 ACCCTAA
1 ACCCTAA
8719 ACCCTAA
1 ACCCTAA
8726 ACCCTAA
1 ACCCTAA
8733 ACCCT-A
1 ACCCTAA
8739 ACCCTAA
1 ACCCTAA
8746 ACCCTAA
1 ACCCTAA
8753 ACCCTAA
1 ACCCTAA
8760 ACCCTAA
1 ACCCTAA
8767 ACCCTAA
1 ACCCTAA
8774 ACCCTAA
1 ACCCTAA
8781 ACCCTAA
1 ACCCTAA
8788 ACCCTAA
1 ACCCTAA
8795 ACCCTAA
1 ACCCTAA
8802 ACCCTAA
1 ACCCTAA
8809 ACCCTAA
1 ACCCTAA
8816 ACCCTAA
1 ACCCTAA
8823 ACCCTAA
1 ACCCTAA
8830 ACCCTAA
1 ACCCTAA
8837 ACCCTAA
1 ACCCTAA
8844 ACCCTAA
1 ACCCTAA
8851 ACCCT-A
1 ACCCTAA
8857 ACCCTAA
1 ACCCTAA
8864 ACCCTAA
1 ACCCTAA
8871 ACCCTAA
1 ACCCTAA
8878 ACCCTAA
1 ACCCTAA
8885 ACCCTAA
1 ACCCTAA
8892 ACCCTAA
1 ACCCTAA
8899 ACCCTAA
1 ACCCTAA
8906 ACCCTAA
1 ACCCTAA
8913 ACCCTAA
1 ACCCTAA
8920 ACCCT-A
1 ACCCTAA
8926 ACCCTAA
1 ACCCTAA
8933 ACCCTAA
1 ACCCTAA
8940 ACCCTAA
1 ACCCTAA
8947 ACCCTAA
1 ACCCTAA
8954 ACCCTAA
1 ACCCTAA
8961 ACCCTAA
1 ACCCTAA
8968 ACCCT-A
1 ACCCTAA
8974 ACCCTAA
1 ACCCTAA
8981 ACCCT-A
1 ACCCTAA
8987 ACCCT-A
1 ACCCTAA
8993 ACCCTAA
1 ACCCTAA
9000 ACCCTAA
1 ACCCTAA
9007 ACCCTAA
1 ACCCTAA
9014 ACCCTAA
1 ACCCTAA
9021 ACCCTAA
1 ACCCTAA
9028 ACCCTAA
1 ACCCTAA
9035 ACCCTAA
1 ACCCTAA
9042 ACCCTAA
1 ACCCTAA
9049 ACCCTAA
1 ACCCTAA
9056 ACCCTAA
1 ACCCTAA
9063 ACCCTAA
1 ACCCTAA
9070 ACCCT-A
1 ACCCTAA
9076 ACCCT-A
1 ACCCTAA
9082 ACCCTAA
1 ACCCTAA
9089 ACCCTAA
1 ACCCTAA
9096 ACCCTAA
1 ACCCTAA
9103 ACCC-AA
1 ACCCTAA
9109 ACCCT-A
1 ACCCTAA
9115 ACCCTAA
1 ACCCTAA
9122 ACCCTAA
1 ACCCTAA
9129 ACCCTAA
1 ACCCTAA
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9136 ACCCCAA
1 ACCCTAA
9143 ACCCTAA
1 ACCCTAA
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9150 ACCCCAA
1 ACCCTAA
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9157 ACCCCAA
1 ACCCTAA
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9164 ACCCCAA
1 ACCCTAA
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9171 ACCC-CA
1 ACCCTAA
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9177 ACCCCAA
1 ACCCTAA
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9184 ACCCCAA
1 ACCCTAA
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9191 ACCCCCCCAA
1 A---CCCTAA
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9201 ACCCCAA
1 ACCCTAA
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9208 ACCCCAA
1 ACCCTAA
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9215 ACCCCAA
1 ACCCTAA
9222 ACCC-AA
1 ACCCTAA
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9228 ACCCCAA
1 ACCCTAA
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9235 ACCC-CA
1 ACCCTAA
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9241 ACCCCAA
1 ACCCTAA
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9248 ACCCCAA
1 ACCCTAA
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9255 ACCCCAA
1 ACCCTAA
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9262 ACCCCAA
1 ACCCTAA
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9269 ACCCCAA
1 ACCCTAA
9276 ACCC-AA
1 ACCCTAA
9282 ACCC-AA
1 ACCCTAA
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9288 ACCCCAA
1 ACCCTAA
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9295 ACCCCAA
1 ACCCTAA
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9302 ACCC-CA
1 ACCCTAA
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9308 ACCCCAA
1 ACCCTAA
9315 ACCC-AA
1 ACCCTAA
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9321 ACCCCAA
1 ACCCTAA
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9328 ACCCCCAA
1 A-CCCTAA
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9336 ACCCCAA
1 ACCCTAA
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9343 ACCCCAA
1 ACCCTAA
9350 ACCC-AA
1 ACCCTAA
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9356 ACCCCAA
1 ACCCTAA
9363 ACCC-AA
1 ACCCTAA
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9369 ACCCCAA
1 ACCCTAA
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9376 ACCCCAA
1 ACCCTAA
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9383 ACCCCAA
1 ACCCTAA
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9390 ACCCCAA
1 ACCCTAA
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9397 ACCCCAA
1 ACCCTAA
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9404 ACCCCAA
1 ACCCTAA
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9411 ACCCCAA
1 ACCCTAA
9418 ACCC-AA
1 ACCCTAA
9424 ACCC-AA
1 ACCCTAA
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9430 ACCCCAA
1 ACCCTAA
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9437 ACCCCAA
1 ACCCTAA
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9444 ACCCCAA
1 ACCCTAA
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9451 ACCCCAA
1 ACCCTAA
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9458 ACCCCAA
1 ACCCTAA
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9465 ACCCCAA
1 ACCCTAA
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9472 ACCC-CA
1 ACCCTAA
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9478 ACCCCAA
1 ACCCTAA
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9485 ACCCCAA
1 ACCCTAA
9492 ACCC-AA
1 ACCCTAA
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9498 ACCC-CA
1 ACCCTAA
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9504 ACCCCAA
1 ACCCTAA
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9511 ACCCCAA
1 ACCCTAA
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9518 ACCC-CA
1 ACCCTAA
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9524 ACCCCAA
1 ACCCTAA
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9531 ACCCCAA
1 ACCCTAA
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9538 ACCCCAA
1 ACCCTAA
9545 ACCC-AA
1 ACCCTAA
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9551 ACCCCAA
1 ACCCTAA
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9558 ACCCCAA
1 ACCCTAA
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9565 ACCCCAA
1 ACCCTAA
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9572 ACCCCAA
1 ACCCTAA
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9579 ACCCCAA
1 ACCCTAA
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9586 ACCCCAA
1 ACCCTAA
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9593 CCCCCCCAA
1 --ACCCTAA
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9602 ACCC-CA
1 ACCCTAA
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9608 ACCCCAA
1 ACCCTAA
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9615 ACCCCCAA
1 A-CCCTAA
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9623 ACCC-CA
1 ACCCTAA
9629 ACCC-AA
1 ACCCTAA
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9635 ACCCCAA
1 ACCCTAA
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9642 ACCCCAAA
1 A-CCCTAA
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9650 ACCCCAA
1 ACCCTAA
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9657 ACCCCAA
1 ACCCTAA
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9664 ACCC-CA
1 ACCCTAA
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9670 ACCCCAA
1 ACCCTAA
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9677 ACCCCAA
1 ACCCTAA
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9684 ACCCCAA
1 ACCCTAA
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9691 ACCCCAA
1 ACCCTAA
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9698 ACCC-CA
1 ACCCTAA
9704 ACCC--A
1 ACCCTAA
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9709 ACCCCAA
1 ACCCTAA
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9716 ACCCCAA
1 ACCCTAA
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9723 ACCC-CA
1 ACCCTAA
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9729 ACCCCAA
1 ACCCTAA
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9736 ACCCCAA
1 ACCCTAA
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9743 ACCC-CA
1 ACCCTAA
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9749 ACCCCAA
1 ACCCTAA
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9756 ACCCCAA
1 ACCCTAA
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9763 ACCCCCAA
1 A-CCCTAA
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9771 ACCCCAA
1 ACCCTAA
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9778 ACCCCAA
1 ACCCTAA
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9785 ACCCCAA
1 ACCCTAA
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9792 ACCCCAA
1 ACCCTAA
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9799 ACCC-CA
1 ACCCTAA
9805 ACCC-AA
1 ACCCTAA
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9811 ACCCCAAA
1 A-CCCTAA
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9819 ACCCCAA
1 ACCCTAA
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9826 ACCCCAA
1 ACCCTAA
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9833 ACCCCAA
1 ACCCTAA
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9840 ACCCCAA
1 ACCCTAA
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9847 ACCCCAA
1 ACCCTAA
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9854 ACCCCAA
1 ACCCTAA
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9861 ACCCCCAA
1 A-CCCTAA
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9869 ACCCCAA
1 ACCCTAA
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9876 ACCCCAA
1 ACCCTAA
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9883 ACCCCAAA
1 A-CCCTAA
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9891 ACCCCAA
1 ACCCTAA
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9898 ACCCCAA
1 ACCCTAA
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9905 ACCCCAA
1 ACCCTAA
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9912 ACCCCAA
1 ACCCTAA
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9919 ACCCCAA
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9926 ACCC-CA
1 ACCCTAA
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9932 ACCCCAA
1 ACCCTAA
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9939 ACCCCAA
1 ACCCTAA
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9946 ACCCCAA
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9953 ACCCCAA
1 ACCCTAA
9960 ACCC-AA
1 ACCCTAA
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9966 ACCCCAA
1 ACCCTAA
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9973 ACCCCAA
1 ACCCTAA
9980 ACCC-AA
1 ACCCTAA
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9986 ACCCCAA
1 ACCCTAA
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9993 ACCCCAA
1 ACCCTAA
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10000 ACCCCAA
1 ACCCTAA
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10007 ACCCCAA
1 ACCCTAA
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10014 ACCCCAA
1 ACCCTAA
10021 ACCC-AA
1 ACCCTAA
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10027 ACCCCAA
1 ACCCTAA
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10034 ACCCCAA
1 ACCCTAA
10041 ACCC-AA
1 ACCCTAA
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10047 ACCCCAA
1 ACCCTAA
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10054 ACCC-CA
1 ACCCTAA
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10060 ACCCCAA
1 ACCCTAA
10067 ACCC-AA
1 ACCCTAA
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10073 ACCCCAA
1 ACCCTAA
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10080 ACCCCAA
1 ACCCTAA
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10087 ACCCCAA
1 ACCCTAA
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10094 ACCCCAA
1 ACCCTAA
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10101 ACCCCAA
1 ACCCTAA
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10108 ACCCCAA
1 ACCCTAA
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10115 ACCCCAA
1 ACCCTAA
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10122 ACCCCAA
1 ACCCTAA
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10129 ACCCCAA
1 ACCCTAA
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10136 ACCCCCAA
1 A-CCCTAA
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10144 ACCCCAA
1 ACCCTAA
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10151 ACCCCAA
1 ACCCTAA
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10158 ACCCCAA
1 ACCCTAA
10165 ACCC-AA
1 ACCCTAA
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10171 ACCCCAA
1 ACCCTAA
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10178 ACCCCAA
1 ACCCTAA
10185 ACCC-AA
1 ACCCTAA
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10191 ACCCCAA
1 ACCCTAA
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10198 ACCCCAA
1 ACCCTAA
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10205 ACCCCAA
1 ACCCTAA
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10212 ACCC-CA
1 ACCCTAA
10218 ACCC-AA
1 ACCCTAA
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10224 ACCCCAA
1 ACCCTAA
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10231 ACCCCCCAA
1 A--CCCTAA
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10240 ACCC-CA
1 ACCCTAA
10246 ACCC-AA
1 ACCCTAA
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10252 ACCCCAA
1 ACCCTAA
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10259 ACCCCAA
1 ACCCTAA
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10266 ACCCCCAA
1 A-CCCTAA
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10274 ACCCCAA
1 ACCCTAA
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10281 ACCCCAAA
1 A-CCCTAA
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10289 ACCCCAA
1 ACCCTAA
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10296 ACCCCAA
1 ACCCTAA
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10303 ACCCCAA
1 ACCCTAA
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10310 ACCCCAA
1 ACCCTAA
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10317 ACCCCAA
1 ACCCTAA
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10324 ACCCCAA
1 ACCCTAA
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10331 ACCCCAA
1 ACCCTAA
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10338 ACCCCAA
1 ACCCTAA
10345 ACCC-AA
1 ACCCTAA
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10351 ACCCCAA
1 ACCCTAA
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10358 ACCCCAA
1 ACCCTAA
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10365 ACCCCAA
1 ACCCTAA
10372 ACCC-AA
1 ACCCTAA
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10378 ACCCCAA
1 ACCCTAA
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10385 ACCCCAA
1 ACCCTAA
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10392 ACCCCAA
1 ACCCTAA
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10399 ACCCCAA
1 ACCCTAA
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10406 ACCCCAA
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10413 CACCCCAA
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10421 ACCCCAA
1 ACCCTAA
10428 ACCC-AA
1 ACCCTAA
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10434 ACCCCAA
1 ACCCTAA
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10441 ACCCCAA
1 ACCCTAA
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10448 ACCCCCAA
1 A-CCCTAA
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10456 ACCCCAA
1 ACCCTAA
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10463 ACCCCAA
1 ACCCTAA
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10470 ACCCCAA
1 ACCCTAA
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10477 ACCCCAA
1 ACCCTAA
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10484 ACCCCAA
1 ACCCTAA
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10491 ACCCCAA
1 ACCCTAA
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1 ACCCTAA
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10505 ACCCCAA
1 ACCCTAA
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10512 ACCCCAA
1 ACCCTAA
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10519 ACCCCAA
1 ACCCTAA
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10526 ACCCCAA
1 ACCCTAA
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10533 ACCCCAA
1 ACCCTAA
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10540 ACCCCAA
1 ACCCTAA
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1 ACCCTAA
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1 ACCCTAA
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10568 ACCCCAA
1 ACCCTAA
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1 ACCCTAA
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10582 ACCCCAA
1 ACCCTAA
10589 ACCC-AA
1 ACCCTAA
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10595 ACCCCAA
1 ACCCTAA
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10602 ACCCCAA
1 ACCCTAA
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10609 ACCCCAA
1 ACCCTAA
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10616 ACCCCCAA
1 A-CCCTAA
10624 ACCC-AA
1 ACCCTAA
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10630 ACCCCAA
1 ACCCTAA
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10637 ACCCCAA
1 ACCCTAA
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1 ACCCTAA
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1 ACCCTAA
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1 ACCCTAA
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1 ACCCTAA
10670 ACCC-AA
1 ACCCTAA
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10676 ACCCCAA
1 ACCCTAA
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10683 ACCCCAA
1 ACCCTAA
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10690 ACCCCAA
1 ACCCTAA
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1 ACCCTAA
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1 ACCCTAA
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10725 ACCCCAA
1 ACCCTAA
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10732 ACCCCAA
1 ACCCTAA
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10755 ACCCCAA
1 ACCCTAA
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1 ACCCTAA
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10767 ACCCCAA
1 ACCCTAA
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10774 ACCCCAA
1 ACCCTAA
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10781 ACCCCAA
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10788 ACCCCAA
1 ACCCTAA
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1 ACCCTAA
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1 ACCCTAA
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1 ACCCTAA
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10816 ACCCCAA
1 ACCCTAA
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10823 ACCCCAA
1 ACCCTAA
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10830 ACCCCAA
1 ACCCTAA
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10837 ACCCCAA
1 ACCCTAA
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10844 ACCCCAA
1 ACCCTAA
10851 ACCC-AA
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10864 ACCCCAA
1 ACCCTAA
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10871 ACCCCAA
1 ACCCTAA
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1 ACCCTAA
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1 ACCCTAA
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10892 ACCCCAA
1 ACCCTAA
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10899 ACCCCAA
1 ACCCTAA
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10906 ACCCCAA
1 ACCCTAA
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10913 ACCCCAA
1 ACCCTAA
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10920 ACCCCAA
1 ACCCTAA
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10927 ACCCCAA
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1 ACCCTAA
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10961 ACCCCAA
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10968 ACCCCAA
1 ACCCTAA
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10975 ACCCCAA
1 ACCCTAA
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1 ACCCTAA
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1 ACCCTAA
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1 ACCCTAA
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11017 ACCCCAA
1 ACCCTAA
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11024 ACCCCAA
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11031 ACCCCAA
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11038 ACCCCCAA
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11046 ACCC-AA
1 ACCCTAA
11052 ACCC-AA
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11058 ACCCCAA
1 ACCCTAA
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11065 ACCCCAA
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11078 ACCCCAA
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11085 ACCCCAA
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11092 ACCCCAA
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1 ACCCTAA
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11126 ACCCCAA
1 ACCCTAA
11133 ACCC-AA
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11187 ACCCCAA
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11220 ACCCCAA
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11227 ACCCCAA
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11315 ACCCCAA
1 ACCCTAA
11322 ACCC-AA
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11429 ACCCCAA
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11436 ACCCCAA
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11470 ACCCCAA
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11477 ACCCCAA
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1 ACCCTAA
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1 ACCCTAA
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11512 ACCCCAA
1 ACCCTAA
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11519 ACCCCAA
1 ACCCTAA
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11526 ACCCCAA
1 ACCCTAA
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11533 ACCCCAA
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1 ACCCTAA
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1 ACCCTAA
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1 ACCCTAA
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1 ACCCTAA
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1 ACCCTAA
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1 ACCCTAA
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1 ACCCTAA
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11589 ACCCCAA
1 ACCCTAA
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11596 ACCCCAA
1 ACCCTAA
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11603 ACCCCAA
1 ACCCTAA
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11610 ACCCCAA
1 ACCCTAA
11617 ACCC-AA
1 ACCCTAA
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11623 ACCCCAA
1 ACCCTAA
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11630 ACCCCAA
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11637 ACCCCAA
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11667 ACCCCAA
1 ACCCTAA
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11674 ACCCCAA
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11681 ACCCCAA
1 ACCCTAA
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11688 ACCCCAA
1 ACCCTAA
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11695 ACCCCAA
1 ACCCTAA
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11702 ACCCCAA
1 ACCCTAA
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11709 ACCCCAA
1 ACCCTAA
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11716 ACCCCAA
1 ACCCTAA
*
11723 ACCCCAA
1 ACCCTAA
*
11730 ACCCCAA
1 ACCCTAA
*
11737 ACCCCAA
1 ACCCTAA
*
11744 ACCCCAAA
1 A-CCCTAA
*
11752 ACCCCAA
1 ACCCTAA
*
11759 ACCCCAA
1 ACCCTAA
*
11766 ACCCCAA
1 ACCCTAA
*
11773 ACCC-CA
1 ACCCTAA
*
11779 ACCCCAA
1 ACCCTAA
*
11786 ACCCCAA
1 ACCCTAA
*
11793 ACCCCAA
1 ACCCTAA
*
11800 ACCCCAA
1 ACCCTAA
*
11807 ACCCCAA
1 ACCCTAA
*
11814 ACCCCAA
1 ACCCTAA
*
11821 ACCCCAA
1 ACCCTAA
*
11828 ACCCCAA
1 ACCCTAA
*
11835 ACCCCAA
1 ACCCTAA
*
11842 ACCCCAA
1 ACCCTAA
*
11849 ACCCCAA
1 ACCCTAA
*
11856 ACCCCAA
1 ACCCTAA
*
11863 ACCCCAAA
1 A-CCCTAA
*
11871 ACCCCAA
1 ACCCTAA
*
11878 ACCCCAA
1 ACCCTAA
11885 ACCC-AA
1 ACCCTAA
*
11891 ACCCCAA
1 ACCCTAA
*
11898 ACCCCAA
1 ACCCTAA
*
11905 ACCCCAA
1 ACCCTAA
11912 ACCC-AA
1 ACCCTAA
*
11918 ACCCCAA
1 ACCCTAA
*
11925 ACCCCAA
1 ACCCTAA
*
11932 ACCCCAA
1 ACCCTAA
*
11939 ACCCCAA
1 ACCCTAA
*
11946 ACCC-CA
1 ACCCTAA
*
11952 ACCC-CA
1 ACCCTAA
11958 ACCC-AA
1 ACCCTAA
*
11964 ACCCCAA
1 ACCCTAA
*
11971 ACCCCAA
1 ACCCTAA
*
11978 ACCCCAA
1 ACCCTAA
*
11985 ACCCCAA
1 ACCCTAA
*
11992 ACCCCAA
1 ACCCTAA
*
11999 ACCCCAA
1 ACCCTAA
*
12006 ACCCCAA
1 ACCCTAA
*
12013 ACCCCAA
1 ACCCTAA
*
12020 ACCCCAA
1 ACCCTAA
*
12027 ACCCCAA
1 ACCCTAA
*
12034 ACCCCAA
1 ACCCTAA
*
12041 ACCCCAA
1 ACCCTAA
*
12048 ACCCCAA
1 ACCCTAA
*
12055 ACCCCAA
1 ACCCTAA
*
12062 ACCCCAA
1 ACCCTAA
*
12069 ACCCCAA
1 ACCCTAA
*
12076 ACCCCAA
1 ACCCTAA
*
12083 ACCCCAA
1 ACCCTAA
*
12090 ACCCCAA
1 ACCCTAA
*
12097 ACCCCAA
1 ACCCTAA
*
12104 ACCC-CA
1 ACCCTAA
*
12110 ACCCCAA
1 ACCCTAA
*
12117 ACCCCAA
1 ACCCTAA
12124 ACCC-AA
1 ACCCTAA
*
12130 ACCCCAA
1 ACCCTAA
*
12137 ACCCCAA
1 ACCCTAA
*
12144 ACCC-CA
1 ACCCTAA
*
12150 ACCCCAA
1 ACCCTAA
*
12157 ACCCCAA
1 ACCCTAA
*
12164 ACCCCAA
1 ACCCTAA
*
12171 ACCCCAA
1 ACCCTAA
*
12178 ACCCCAA
1 ACCCTAA
*
12185 ACCCCAA
1 ACCCTAA
*
12192 ACCCCAA
1 ACCCTAA
*
12199 ACCCCAA
1 ACCCTAA
12206 ACCC-AA
1 ACCCTAA
*
12212 ACCCCAA
1 ACCCTAA
*
12219 ACCCCCAA
1 A-CCCTAA
*
12227 ACCCCAA
1 ACCCTAA
*
12234 ACCC-CA
1 ACCCTAA
*
12240 ACCCCAA
1 ACCCTAA
*
12247 ACCCCAA
1 ACCCTAA
*
12254 ACCCCAA
1 ACCCTAA
*
12261 ACCCCAA
1 ACCCTAA
*
12268 ACCCCAA
1 ACCCTAA
*
12275 ACCCCAA
1 ACCCTAA
*
12282 ACCCCAA
1 ACCCTAA
*
12289 ACCCCAA
1 ACCCTAA
*
12296 ACCCCAA
1 ACCCTAA
*
12303 ACCCCAA
1 ACCCTAA
*
12310 ACCCCAA
1 ACCCTAA
*
12317 ACCCCAA
1 ACCCTAA
*
12324 ACCCCAA
1 ACCCTAA
*
12331 ACCCCAA
1 ACCCTAA
*
12338 ACCCCAA
1 ACCCTAA
*
12345 ACCCCAA
1 ACCCTAA
*
12352 ACCCCAAAAA
1 A-CCC--TAA
*
12362 ACCCCAA
1 ACCCTAA
*
12369 ACCCCAA
1 ACCCTAA
*
12376 ACCCCAA
1 ACCCTAA
*
12383 ACCCCAA
1 ACCCTAA
*
12390 ACCCCAA
1 ACCCTAA
*
12397 ACCCCAA
1 ACCCTAA
*
12404 ACCCCCAA
1 A-CCCTAA
*
12412 ACCCCAA
1 ACCCTAA
*
12419 ACCCCAA
1 ACCCTAA
*
12426 ACCC-CA
1 ACCCTAA
*
12432 ACCC-CA
1 ACCCTAA
*
12438 ACCCCAA
1 ACCCTAA
*
12445 ACCCCAA
1 ACCCTAA
*
12452 ACCCCAA
1 ACCCTAA
*
12459 ACCCCAA
1 ACCCTAA
12466 ACCC-AA
1 ACCCTAA
*
12472 ACCCCAA
1 ACCCTAA
*
12479 ACCCCAA
1 ACCCTAA
12486 ACCC-AA
1 ACCCTAA
*
12492 ACCCCAA
1 ACCCTAA
*
12499 ACCCCAA
1 ACCCTAA
*
12506 ACCCCAA
1 ACCCTAA
12513 ACCC-AA
1 ACCCTAA
*
12519 ACCCCAA
1 ACCCTAA
*
12526 ACCCCAA
1 ACCCTAA
*
12533 ACCC-CA
1 ACCCTAA
12539 ACCC-AA
1 ACCCTAA
*
12545 ACCCCAA
1 ACCCTAA
*
12552 ACCCCAA
1 ACCCTAA
*
12559 ACCCCAA
1 ACCCTAA
*
12566 ACCCCAA
1 ACCCTAA
*
12573 ACCCCAA
1 ACCCTAA
*
12580 ACCCCAA
1 ACCCTAA
*
12587 ACCCCAA
1 ACCCTAA
*
12594 ACCC-CA
1 ACCCTAA
12600 ACCC-AA
1 ACCCTAA
*
12606 ACCCCAA
1 ACCCTAA
*
12613 ACCCCAA
1 ACCCTAA
*
12620 ACCCAAA
1 ACCCTAA
*
12627 ACCCCAA
1 ACCCTAA
*
12634 ACCCCAA
1 ACCCTAA
*
12641 ACCCCAA
1 ACCCTAA
*
12648 ACCCCAA
1 ACCCTAA
*
12655 ACCCCAA
1 ACCCTAA
*
12662 ACCCCAA
1 ACCCTAA
*
12669 ACCCCAA
1 ACCCTAA
*
12676 ACCCCAA
1 ACCCTAA
*
12683 ACCCCAA
1 ACCCTAA
12690 ACCC--A
1 ACCCTAA
*
12695 ACCCCAA
1 ACCCTAA
*
12702 ACCCCAA
1 ACCCTAA
*
12709 ACCCCAA
1 ACCCTAA
*
12716 ACCCCAA
1 ACCCTAA
*
12723 ACCCCAA
1 ACCCTAA
*
12730 ACCCCAA
1 ACCCTAA
*
12737 ACCC-CA
1 ACCCTAA
*
12743 ACCCCAA
1 ACCCTAA
*
12750 ACCCCAA
1 ACCCTAA
*
12757 ACCC-CA
1 ACCCTAA
*
12763 ACCCCAA
1 ACCCTAA
*
12770 ACCCCAA
1 ACCCTAA
*
12777 ACCCCAA
1 ACCCTAA
*
12784 ACCCCAA
1 ACCCTAA
*
12791 ACCCCAA
1 ACCCTAA
*
12798 ACCCCAA
1 ACCCTAA
*
12805 ACCCCAA
1 ACCCTAA
*
12812 ACCCCAA
1 ACCCTAA
*
12819 ACCCCAA
1 ACCCTAA
*
12826 ACCCCAA
1 ACCCTAA
*
12833 ACCCCAA
1 ACCCTAA
*
12840 ACCCCAA
1 ACCCTAA
*
12847 ACCCCAA
1 ACCCTAA
*
12854 ACCCCAAA
1 A-CCCTAA
*
12862 ACCCCAA
1 ACCCTAA
*
12869 ACCCCAA
1 ACCCTAA
*
12876 ACCCCAA
1 ACCCTAA
*
12883 ACCCCAA
1 ACCCTAA
*
12890 ACCCCAA
1 ACCCTAA
*
12897 ACCCCAA
1 ACCCTAA
*
12904 ACCCCAA
1 ACCCTAA
*
12911 ACCCCAA
1 ACCCTAA
12918 ACCC
1 ACCC
12922 CAACCCCAGA
Statistics
Matches: 12210, Mismatches: 246, Indels: 916
0.91 0.02 0.07
Matches are distributed among these distances:
4 17 0.00
5 154 0.01
6 1948 0.16
7 9662 0.79
8 284 0.02
9 78 0.01
10 63 0.01
11 4 0.00
ACGTcount: A:0.41, C:0.48, G:0.02, T:0.10
Consensus pattern (7 bp):
ACCCTAA
Found at i:13261 original size:7 final size:7
Alignment explanation
Indices: 13217--13262 Score: 78
Period size: 7 Copynumber: 6.9 Consensus size: 7
13207 CAGACCCCAG
13217 ACCCT-A
1 ACCCTAA
13223 ACCCT-A
1 ACCCTAA
13229 ACCCTAA
1 ACCCTAA
13236 ACCCTAA
1 ACCCTAA
13243 ACCCTAA
1 ACCCTAA
13250 ACCCTAA
1 ACCCTAA
13257 ACCCTA
1 ACCCTA
13263 CCCCGGACCC
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
6 11 0.28
7 28 0.72
ACGTcount: A:0.39, C:0.46, G:0.00, T:0.15
Consensus pattern (7 bp):
ACCCTAA
Found at i:13272 original size:7 final size:7
Alignment explanation
Indices: 13262--13408 Score: 166
Period size: 7 Copynumber: 21.7 Consensus size: 7
13252 CCTAAACCCT
13262 ACCCCGG
1 ACCCCGG
13269 ACCCCGG
1 ACCCCGG
13276 ACCCCGG
1 ACCCCGG
13283 A-CCCGG
1 ACCCCGG
13289 ACCCCGG
1 ACCCCGG
13296 ACCCCGG
1 ACCCCGG
13303 ACACCCGG
1 AC-CCCGG
13311 ACCCCGG
1 ACCCCGG
13318 ACCCCGG
1 ACCCCGG
13325 A-CCCGG
1 ACCCCGG
13331 ACCCCGG
1 ACCCCGG
13338 A-CCCGG
1 ACCCCGG
13344 ACCCC-G
1 ACCCCGG
13350 ACCCC-G
1 ACCCCGG
*
13356 ACCCCCG
1 ACCCCGG
*
13363 ACCCCTAG
1 ACCCC-GG
*
13371 ACCCCCG
1 ACCCCGG
*
13378 ACCCCTAG
1 ACCCC-GG
13386 ACCCC-G
1 ACCCCGG
*
13392 ACCCCCG
1 ACCCCGG
13399 -CCCC-G
1 ACCCCGG
13404 ACCCC
1 ACCCC
13409 CCGACCCCCC
Statistics
Matches: 128, Mismatches: 3, Indels: 19
0.85 0.02 0.13
Matches are distributed among these distances:
5 1 0.01
6 44 0.34
7 64 0.50
8 19 0.15
ACGTcount: A:0.16, C:0.60, G:0.22, T:0.01
Consensus pattern (7 bp):
ACCCCGG
Found at i:13289 original size:13 final size:13
Alignment explanation
Indices: 13262--13366 Score: 149
Period size: 13 Copynumber: 7.8 Consensus size: 13
13252 CCTAAACCCT
13262 ACCCCGGACCCCGG
1 ACCCCGGA-CCCGG
13276 ACCCCGGACCCGG
1 ACCCCGGACCCGG
13289 ACCCCGGACCCCGG
1 ACCCCGGA-CCCGG
13303 ACACCCGGACCCCGG
1 AC-CCCGGA-CCCGG
13318 ACCCCGGACCCGG
1 ACCCCGGACCCGG
13331 ACCCCGGACCCGG
1 ACCCCGGACCCGG
*
13344 ACCCC-GACCCCG
1 ACCCCGGACCCGG
*
13356 ACCCCCGACCC
1 ACCCCGGACCC
13367 CTAGACCCCC
Statistics
Matches: 87, Mismatches: 1, Indels: 7
0.92 0.01 0.07
Matches are distributed among these distances:
12 11 0.13
13 41 0.47
14 21 0.24
15 14 0.16
ACGTcount: A:0.16, C:0.58, G:0.26, T:0.00
Consensus pattern (13 bp):
ACCCCGGACCCGG
Found at i:13289 original size:20 final size:20
Alignment explanation
Indices: 13264--13366 Score: 156
Period size: 20 Copynumber: 5.2 Consensus size: 20
13254 TAAACCCTAC
13264 CCCGGACCCCGGACCCCGGA
1 CCCGGACCCCGGACCCCGGA
13284 CCCGGACCCCGGACCCCGGACA
1 CCCGGACCCCGGACCCCGG--A
13306 CCCGGACCCCGGACCCCGGA
1 CCCGGACCCCGGACCCCGGA
13326 CCCGGACCCCGGA-CCCGGA
1 CCCGGACCCCGGACCCCGGA
* *
13345 CCCCGACCCC-GACCCCCGA
1 CCCGGACCCCGGACCCCGGA
13364 CCC
1 CCC
13367 CTAGACCCCC
Statistics
Matches: 78, Mismatches: 2, Indels: 7
0.90 0.02 0.08
Matches are distributed among these distances:
18 2 0.03
19 23 0.29
20 33 0.42
22 20 0.26
ACGTcount: A:0.16, C:0.58, G:0.26, T:0.00
Consensus pattern (20 bp):
CCCGGACCCCGGACCCCGGA
Found at i:13375 original size:15 final size:15
Alignment explanation
Indices: 13345--13396 Score: 83
Period size: 15 Copynumber: 3.7 Consensus size: 15
13335 CGGACCCGGA
13345 CCCCGACCCC--GAC
1 CCCCGACCCCTAGAC
13358 CCCCGACCCCTAGAC
1 CCCCGACCCCTAGAC
13373 CCCCGACCCCTAGA-
1 CCCCGACCCCTAGAC
13387 CCCCGACCCC
1 CCCCGACCCC
13397 CGCCCCGACC
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
13 10 0.27
14 10 0.27
15 17 0.46
ACGTcount: A:0.17, C:0.65, G:0.13, T:0.04
Consensus pattern (15 bp):
CCCCGACCCCTAGAC
Found at i:13394 original size:21 final size:21
Alignment explanation
Indices: 9136--13408 Score: 2597
Period size: 21 Copynumber: 207.2 Consensus size: 21
9126 TAAACCCTAA
* * * *
9136 ACCCCAAACCCTAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
9157 ACCCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * *
9177 ACCCCAAACCCCAAACCCCCCCAA
1 ACCCCAGACCCCAGA---CCCCAG
* *
9201 ACCCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * *
9221 AACCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * *
9241 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
9262 ACCCCAAACCCCA-AACCCA-
1 ACCCCAGACCCCAGACCCCAG
* * * *
9281 AACCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
9302 ACCCCA-ACCCCA-AACCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
9321 ACCCCAAACCCCCAAACCCCAA
1 ACCCCAGA-CCCCAGACCCCAG
* *
9343 ACCCCA-AACCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * * *
9362 AACCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
9383 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
9404 ACCCCAAACCCCA-AACCCA-
1 ACCCCAGACCCCAGACCCCAG
* * * *
9423 AACCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
9444 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
9465 ACCCCAAACCCCA-ACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
9485 ACCCCA-AACCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* *
9504 ACCCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* *
9524 ACCCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * * *
9544 AACCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
9565 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
*
9586 ACCCCA-ACCCCCCCAAACCCCA-
1 ACCCCAGA---CCCCAGACCCCAG
* *
9608 ACCCCAAACCCCCAAACCCCA-
1 ACCCCAGA-CCCCAGACCCCAG
* * *
9629 A-CCCAAACCCCAAACCCCAAA
1 ACCCCAGACCCCAGACCCC-AG
* *
9650 ACCCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * *
9670 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
*
9691 ACCCCAAACCCCA-A-CCCA-
1 ACCCCAGACCCCAGACCCCAG
* *
9709 ACCCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* *
9729 ACCCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * *
9749 ACCCCAAACCCCAAACCCCCAA
1 ACCCCAGACCCCAGA-CCCCAG
* * *
9771 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
9792 ACCCCAAACCCCA-A-CCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
9811 ACCCCAAAACCCCAAACCCCAA
1 ACCCC-AGACCCCAGACCCCAG
* * *
9833 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
9854 ACCCCAAACCCCCAAACCCCAA
1 ACCCCAGA-CCCCAGACCCCAG
* * *
9876 ACCCCAAACCCCAAAACCCCAA
1 ACCCCAGACCCC-AGACCCCAG
* * *
9898 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
9919 ACCCCAAACCCCA-ACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
9939 ACCCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * *
9959 AACCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * * *
9979 AACCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
10000 ACCCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * *
10020 AACCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * *
10040 AACCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * *
10060 ACCCCA-AACCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
10080 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
10101 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
10122 ACCCCAAACCCCAAACCCCCAA
1 ACCCCAGACCCCAGA-CCCCAG
* *
10144 ACCCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * *
10164 AACCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * * *
10184 AACCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
10205 ACCCCAAACCCCA-A-CCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
10224 ACCCCAAACCCCCCAAACCCCA-
1 ACCCCAGA--CCCCAGACCCCAG
* * *
10246 A-CCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
10266 ACCCCCAAACCCCAAACCCCAAA
1 A-CCCCAGACCCCAGACCCC-AG
* * *
10289 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
10310 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
10331 ACCCCAAACCCCA-AACCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
10351 ACCCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * * *
10371 AACCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
10392 ACCCCAAACCCCAAACCCCAAC
1 ACCCCAGACCCCAGACCCC-AG
* * *
10414 ACCCCAAACCCCA-AACCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
10434 ACCCCAAACCCCAAACCCCCAA
1 ACCCCAGACCCCAGA-CCCCAG
* * *
10456 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
10477 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
10498 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
10519 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
10540 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
10561 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
10582 ACCCCA-AACCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
10602 ACCCCAAACCCCAAACCCCCA-
1 ACCCCAGACCCCAGA-CCCCAG
* * * *
10623 AACCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
10644 ACCCCAAACCCC--ACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
10663 ACCCCA-AACCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
10683 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
10704 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
10725 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
10746 ACCCCCCAAACCCCA-AACCCA-
1 A--CCCCAGACCCCAGACCCCAG
* * *
10767 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
10788 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
10809 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
10830 ACCCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * * *
10850 AACCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
10871 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
10892 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
10913 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
10934 ACCCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * *
10954 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
10975 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
10996 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11017 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11038 ACCCCCA-AACCCA-AACCCAA
1 A-CCCCAGACCCCAGACCCCAG
* *
11058 ACCCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * *
11078 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11099 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
11120 ACCCCA-ACCCCA-AACCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11139 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
11160 ACCCCAAACCCCA-ACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
11180 ACCCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * *
11200 AACCCA-ACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11220 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
11241 ACCCCA-ACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
11261 ACCCCAAACCCCA-A-CCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11280 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
*
11301 ACCCCCAAACCCCA-ACCCCA-
1 A-CCCCAGACCCCAGACCCCAG
* * * *
11321 AACCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
11342 ACCCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * *
11362 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
11383 ACCCCAAACCCCA-ACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11403 ACCCCA-AACCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
*
11423 ACCCCA-ACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * * *
11442 AACCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11463 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11484 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11505 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11526 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11547 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11568 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11589 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11610 ACCCCA-AACCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11630 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11651 ACCCCAAACCCCCCAAACCCCAA
1 ACCCCAGA--CCCCAGACCCCAG
* * *
11674 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11695 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11716 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11737 ACCCCAAACCCCAAAACCCCAA
1 ACCCCAGACCCC-AGACCCCAG
* *
11759 ACCCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * *
11779 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11800 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11821 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11842 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
11863 ACCCCAAAACCCCAAACCCCA-
1 ACCCC-AGACCCCAGACCCCAG
* * * *
11884 AACCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11905 ACCCCA-AACCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11925 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
*
11946 ACCCCA-ACCCCA-A-CCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11964 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
11985 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12006 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12027 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12048 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12069 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
12090 ACCCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * *
12110 ACCCCAAACCCCA-AACCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
12130 ACCCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * *
12150 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12171 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12192 ACCCCAAACCCCA-AACCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12212 ACCCCAAACCCCCAAACCCCAA
1 ACCCCAGA-CCCCAGACCCCAG
* *
12234 ACCCCA-ACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12254 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12275 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12296 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12317 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12338 ACCCCAAACCCCAAACCCCAAAAA
1 ACCCCAGACCCCAGACCCC---AG
* * *
12362 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12383 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12404 ACCCCCAAACCCCAAACCCCAA
1 A-CCCCAGACCCCAGACCCCAG
*
12426 ACCCCA-ACCCCA-ACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
12445 ACCCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * *
12465 AACCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * * *
12485 AACCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12506 ACCCCA-AACCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
12526 ACCCCAAACCCCA-A-CCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12545 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12566 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
12587 ACCCCAAACCCCA-A-CCCAA
1 ACCCCAGACCCCAGACCCCAG
* * * *
12606 ACCCCAAACCCCAAACCCAAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12627 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12648 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
12669 ACCCCAAACCCCAAACCCCA-
1 ACCCCAGACCCCAGACCCCAG
* * *
12689 AACCCA-ACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12709 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
12730 ACCCCAAACCCCA-ACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* *
12750 ACCCCAAACCCCA-ACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12770 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12791 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12812 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12833 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12854 ACCCCAAAACCCCAAACCCCAA
1 ACCCC-AGACCCCAGACCCCAG
* * *
12876 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
* * *
12897 ACCCCAAACCCCAAACCCCAA
1 ACCCCAGACCCCAGACCCCAG
12918 ACCCCA-ACCCCAGA-CCCAG
1 ACCCCAGACCCCAGACCCCAG
12937 ACCCCAGACCCCAGA-CCCAG
1 ACCCCAGACCCCAGACCCCAG
12957 ACCCCAGACCCCAGACCCCAG
1 ACCCCAGACCCCAGACCCCAG
12978 ACCCC--ACCCCAGACCCCAG
1 ACCCCAGACCCCAGACCCCAG
12997 ACCCCAGACCCCAGACCCCAG
1 ACCCCAGACCCCAGACCCCAG
13018 ACCCCAGACCCCAGACCCCAG
1 ACCCCAGACCCCAGACCCCAG
13039 ACCCCAGACCCCAGACCCCAG
1 ACCCCAGACCCCAGACCCCAG
13060 ACCCCAGACCCCAGACCCCAG
1 ACCCCAGACCCCAGACCCCAG
13081 ACCCCAGACCCCAGACCCCAG
1 ACCCCAGACCCCAGACCCCAG
13102 A-CCCAGACCCCAGA-CCCAG
1 ACCCCAGACCCCAGACCCCAG
13121 ACCCCA-ACCCCAGACCCCAG
1 ACCCCAGACCCCAGACCCCAG
13141 ACCCCAGACCCCAGACCCCAG
1 ACCCCAGACCCCAGACCCCAG
13162 A-CCCAGACCCCAGACCCCAG
1 ACCCCAGACCCCAGACCCCAG
13182 ACCCCAGACCCCAGACCCCAG
1 ACCCCAGACCCCAGACCCCAG
*
13203 ACCCCAGACCCCAGACCCTA-
1 ACCCCAGACCCCAGACCCCAG
* * * * *
13223 ACCCTA-ACCCTAAACCCTAA
1 ACCCCAGACCCCAGACCCCAG
* * * * *
13243 ACCCTAAACCCTA-AACCC-T
1 ACCCCAGACCCCAGACCCCAG
* * *
13262 ACCCCGGACCCCGGACCCCGG
1 ACCCCAGACCCCAGACCCCAG
* * *
13283 A-CCCGGACCCCGGACCCCGG
1 ACCCCAGACCCCAGACCCCAG
* * *
13303 ACACCCGGACCCCGGACCCCGG
1 AC-CCCAGACCCCAGACCCCAG
* * *
13325 A-CCCGGACCCCGGA-CCCGG
1 ACCCCAGACCCCAGACCCCAG
*
13344 ACCCC-GACCCC-GACCCCCG
1 ACCCCAGACCCCAGACCCCAG
*
13363 ACCCCTAGACCCCCGACCCCTAG
1 ACCCC-AGACCCCAGACCCC-AG
*
13386 ACCCC-GACCCCCG-CCCC-G
1 ACCCCAGACCCCAGACCCCAG
13404 ACCCC
1 ACCCC
13409 CCGACCCCCC
Statistics
Matches: 4018, Mismatches: 97, Indels: 277
0.91 0.02 0.06
Matches are distributed among these distances:
18 36 0.01
19 366 0.09
20 1131 0.28
21 2048 0.51
22 337 0.08
23 64 0.02
24 36 0.01
ACGTcount: A:0.41, C:0.57, G:0.02, T:0.00
Consensus pattern (21 bp):
ACCCCAGACCCCAGACCCCAG
Found at i:13397 original size:15 final size:14
Alignment explanation
Indices: 12935--13408 Score: 247
Period size: 14 Copynumber: 34.9 Consensus size: 14
12925 CCCCAGACCC
12935 AGACCCCAGACCCC-
1 AGACCCC-GACCCCT
*
12949 AGACCCAGACCCC-
1 AGACCCCGACCCCT
12962 AGACCCCAGACCCC-
1 AGACCCC-GACCCCT
12976 AGACCCC-ACCCC-
1 AGACCCCGACCCCT
12988 AGACCCCAGACCCC-
1 AGACCCC-GACCCCT
13002 AGACCCCAGACCCC-
1 AGACCCC-GACCCCT
13016 AGACCCCAGACCCC-
1 AGACCCC-GACCCCT
13030 AGACCCCAGACCCC-
1 AGACCCC-GACCCCT
13044 AGACCCCAGACCCC-
1 AGACCCC-GACCCCT
13058 AGACCCCAGACCCC-
1 AGACCCC-GACCCCT
13072 AGACCCCAGACCCC-
1 AGACCCC-GACCCCT
13086 AGACCCCAGACCCC-
1 AGACCCC-GACCCCT
*
13100 AGACCCAGACCCC-
1 AGACCCCGACCCCT
*
13113 AGACCCAGACCCC-
1 AGACCCCGACCCCT
13126 A-ACCCCAGACCCC-
1 AGACCCC-GACCCCT
13139 AGACCCCAGACCCC-
1 AGACCCC-GACCCCT
13153 AGACCCCAGA-CCC-
1 AGACCCC-GACCCCT
13166 AGACCCCAGACCCC-
1 AGACCCC-GACCCCT
13180 AGACCCCAGACCCC-
1 AGACCCC-GACCCCT
13194 AGACCCCAGACCCC-
1 AGACCCC-GACCCCT
13208 AGACCCCAGA-CCCT
1 AGACCCC-GACCCCT
* *
13222 A-A-CCCTAACCCT
1 AGACCCCGACCCCT
* ** *
13234 AAACCCTAAACCCT
1 AGACCCCGACCCCT
* ** *
13248 AAACCCTAAACCCT
1 AGACCCCGACCCCT
13262 --ACCCCGGACCCC-
1 AGACCCC-GACCCCT
*
13274 GGACCCCGGA-CCC-
1 AGACCCC-GACCCCT
*
13287 GGACCCCGGACCCC-
1 AGACCCC-GACCCCT
*
13301 GGACACCCGGACCCC-
1 AGAC-CCC-GACCCCT
*
13316 GGACCCCGGA-CCC-
1 AGACCCC-GACCCCT
*
13329 GGACCCCGGA-CCC-
1 AGACCCC-GACCCCT
*
13342 GGACCCCGACCCC-
1 AGACCCCGACCCCT
13355 -GACCCCCGACCCCT
1 AGA-CCCCGACCCCT
13369 AGACCCCCGACCCCT
1 AGA-CCCCGACCCCT
13384 AGACCCCGACCCC-
1 AGACCCCGACCCCT
*
13397 CG-CCCCGACCCC
1 AGACCCCGACCCC
13409 CCGACCCCCC
Statistics
Matches: 430, Mismatches: 11, Indels: 40
0.89 0.02 0.08
Matches are distributed among these distances:
11 1 0.00
12 42 0.10
13 111 0.26
14 245 0.57
15 31 0.07
ACGTcount: A:0.26, C:0.57, G:0.15, T:0.02
Consensus pattern (14 bp):
AGACCCCGACCCCT
Found at i:13408 original size:26 final size:25
Alignment explanation
Indices: 13372--13444 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 25
13362 GACCCCTAGA
*
13372 CCCCCGACCCCTAGACCCCGACCCC
1 CCCCCGACCCCCAGACCCCGACCCC
* *
13397 CGCCCCGACCCCCCGACCCCCCACCCC
1 C-CCCCGACCCCCAGA-CCCCGACCCC
*
13424 CCCCCGAACCCC-GAACCCCGA
1 CCCCCGACCCCCAG-ACCCCGA
13445 ACCCTGAACC
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
25 7 0.17
26 23 0.57
27 10 0.25
ACGTcount: A:0.16, C:0.70, G:0.12, T:0.01
Consensus pattern (25 bp):
CCCCCGACCCCCAGACCCCGACCCC
Found at i:13422 original size:15 final size:15
Alignment explanation
Indices: 13351--13425 Score: 77
Period size: 15 Copynumber: 5.3 Consensus size: 15
13341 CGGACCCCGA
13351 CCCCGACCCCCGACC
1 CCCCGACCCCCGACC
**
13366 CCTAGACCCCCGACC
1 CCCCGACCCCCGACC
**
13381 CCTAGA-CCCCGA-C
1 CCCCGACCCCCGACC
13394 CCCCG--CCCCGACC
1 CCCCGACCCCCGACC
*
13407 CCCCGACCCCCCACC
1 CCCCGACCCCCGACC
13422 CCCC
1 CCCC
13426 CCCGAACCCC
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
12 6 0.12
13 10 0.19
14 6 0.12
15 30 0.58
ACGTcount: A:0.15, C:0.71, G:0.12, T:0.03
Consensus pattern (15 bp):
CCCCGACCCCCGACC
Found at i:13428 original size:20 final size:20
Alignment explanation
Indices: 13345--13436 Score: 64
Period size: 20 Copynumber: 4.6 Consensus size: 20
13335 CGGACCCGGA
13345 CCCCGA-CCCCGACCCCCGACC
1 CCCCGACCCCCG-CCCCC-ACC
** * **
13366 CCTAGACCCCCGACCCCTAGA
1 CCCCGACCCCCG-CCCCCACC
*
13387 CCCCGACCCCCGCCCCGACC
1 CCCCGACCCCCGCCCCCACC
*
13407 CCCCGACCCCC-CACCC-CC
1 CCCCGACCCCCGCCCCCACC
*
13425 CCCCGAACCCCG
1 CCCCGACCCCCG
13437 AACCCCGAAC
Statistics
Matches: 56, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
18 12 0.21
19 3 0.05
20 16 0.29
21 15 0.27
22 10 0.18
ACGTcount: A:0.15, C:0.70, G:0.13, T:0.02
Consensus pattern (20 bp):
CCCCGACCCCCGCCCCCACC
Found at i:13445 original size:7 final size:7
Alignment explanation
Indices: 13262--13618 Score: 128
Period size: 7 Copynumber: 52.1 Consensus size: 7
13252 CCTAAACCCT
*
13262 ACCCCGG
1 ACCCCGA
*
13269 ACCCCGG
1 ACCCCGA
*
13276 ACCCCGG
1 ACCCCGA
*
13283 A-CCCGG
1 ACCCCGA
*
13289 ACCCCGG
1 ACCCCGA
*
13296 ACCCCGG
1 ACCCCGA
*
13303 ACACCCGG
1 AC-CCCGA
*
13311 ACCCCGG
1 ACCCCGA
*
13318 ACCCCGG
1 ACCCCGA
*
13325 A-CCCGG
1 ACCCCGA
*
13331 ACCCCGG
1 ACCCCGA
*
13338 A-CCCGG
1 ACCCCGA
13344 ACCCCG-
1 ACCCCGA
13350 ACCCCGA
1 ACCCCGA
*
13357 CCCCCG-
1 ACCCCGA
13363 ACCCCTAGA
1 ACCCC--GA
*
13372 CCCCCG-
1 ACCCCGA
*
13378 ACCCCTA
1 ACCCCGA
13385 GACCCCGA
1 -ACCCCGA
*
13393 CCCCCG-
1 ACCCCGA
13399 -CCCCGA
1 ACCCCGA
*
13405 CCCCCCG-
1 -ACCCCGA
**
13412 ACCCCCC
1 ACCCCGA
13419 ACCCC--
1 ACCCCGA
*
13424 CCCCCGA
1 ACCCCGA
13431 ACCCCGA
1 ACCCCGA
13438 ACCCCGA
1 ACCCCGA
*
13445 ACCCTGA
1 ACCCCGA
**
13452 ACCCTAA
1 ACCCCGA
**
13459 ACCCTAA
1 ACCCCGA
13466 ACCCCGA
1 ACCCCGA
13473 ACCCCGA
1 ACCCCGA
13480 ACCCCGA
1 ACCCCGA
*
13487 A-CCCTA
1 ACCCCGA
* *
13493 AACCCTA
1 ACCCCGA
* *
13500 AACCCTA
1 ACCCCGA
* *
13507 AACCCTA
1 ACCCCGA
* *
13514 A-ACCTA
1 ACCCCGA
* *
13520 AACCCTA
1 ACCCCGA
* *
13527 AACCCTA
1 ACCCCGA
* *
13534 AACCCGG
1 ACCCCGA
*
13541 ACCCCGG
1 ACCCCGA
*
13548 ACCCCGG
1 ACCCCGA
*
13555 ACCCCGG
1 ACCCCGA
*
13562 ACCCCGG
1 ACCCCGA
13569 ACCCCGA
1 ACCCCGA
*
13576 GCCCCGA
1 ACCCCGA
*
13583 GCCCCGA
1 ACCCCGA
*
13590 GCCCCGA
1 ACCCCGA
*
13597 GCCCCGA
1 ACCCCGA
*
13604 GCCCCGA
1 ACCCCGA
*
13611 GCCCCGA
1 ACCCCGA
13618 A
1 A
13619 AATAATTCAT
Statistics
Matches: 308, Mismatches: 24, Indels: 36
0.84 0.07 0.10
Matches are distributed among these distances:
5 9 0.03
6 46 0.15
7 230 0.75
8 19 0.06
9 4 0.01
ACGTcount: A:0.22, C:0.56, G:0.18, T:0.03
Consensus pattern (7 bp):
ACCCCGA
Found at i:13470 original size:35 final size:34
Alignment explanation
Indices: 13433--13551 Score: 157
Period size: 34 Copynumber: 3.5 Consensus size: 34
13423 CCCCCCGAAC
13433 CCCGAACCCCGAACCCTGAACCCTAAACCCTAAA
1 CCCGAACCCCGAACCCTGAACCCTAAACCCTAAA
*
13467 CCCCGAACCCCGAACCCCGAACCCTAAACCCTAAA
1 -CCCGAACCCCGAACCCTGAACCCTAAACCCTAAA
* * * * *
13502 CCCTAAACCCTAAACCTAAACCCTAAACCCTAAA
1 CCCGAACCCCGAACCCTGAACCCTAAACCCTAAA
* *
13536 CCCGGACCCCGGACCC
1 CCCGAACCCCGAACCC
13552 CGGACCCCGG
Statistics
Matches: 71, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
34 38 0.54
35 33 0.46
ACGTcount: A:0.34, C:0.49, G:0.08, T:0.08
Consensus pattern (34 bp):
CCCGAACCCCGAACCCTGAACCCTAAACCCTAAA
Found at i:13498 original size:42 final size:42
Alignment explanation
Indices: 13425--13511 Score: 165
Period size: 42 Copynumber: 2.1 Consensus size: 42
13415 CCCCACCCCC
*
13425 CCCCGAACCCCGAACCCCGAACCCTGAACCCTAAACCCTAAA
1 CCCCGAACCCCGAACCCCGAACCCTAAACCCTAAACCCTAAA
13467 CCCCGAACCCCGAACCCCGAACCCTAAACCCTAAACCCTAAA
1 CCCCGAACCCCGAACCCCGAACCCTAAACCCTAAACCCTAAA
13509 CCC
1 CCC
13512 TAAACCTAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.33, C:0.52, G:0.08, T:0.07
Consensus pattern (42 bp):
CCCCGAACCCCGAACCCCGAACCCTAAACCCTAAACCCTAAA
Found at i:13544 original size:20 final size:20
Alignment explanation
Indices: 13444--13538 Score: 100
Period size: 20 Copynumber: 4.6 Consensus size: 20
13434 CCGAACCCCG
*
13444 AACCCTGAACCCTAAACCCTA
1 AACCCTAAACCC-AAACCCTA
* * * **
13465 AACCCCGAACCCCGAACCCCG
1 AA-CCCTAAACCCAAACCCTA
13486 AACCCTAAACCCTAAACCCTA
1 AACCCTAAACCC-AAACCCTA
*
13507 AACCCTAAACCTAAACCCTA
1 AACCCTAAACCCAAACCCTA
13527 AACCCTAAACCC
1 AACCCTAAACCC
13539 GGACCCCGGA
Statistics
Matches: 59, Mismatches: 13, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
20 27 0.46
21 25 0.42
22 7 0.12
ACGTcount: A:0.39, C:0.46, G:0.04, T:0.11
Consensus pattern (20 bp):
AACCCTAAACCCAAACCCTA
Found at i:14913 original size:18 final size:17
Alignment explanation
Indices: 14859--14907 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
14849 TTGGAACCTT
* *
14859 AGTGCATCGGTGCACTAA
1 AGTGCATCGATGCA-TCA
14877 GAGTGCATCGATGCATCA
1 -AGTGCATCGATGCATCA
14895 AGTGCATTCGATG
1 AGTGCA-TCGATG
14908 TTTCAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 6 0.22
18 8 0.30
19 13 0.48
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (17 bp):
AGTGCATCGATGCATCA
Found at i:14991 original size:64 final size:64
Alignment explanation
Indices: 14878--15067 Score: 217
Period size: 64 Copynumber: 3.0 Consensus size: 64
14868 GTGCACTAAG
* * *** *
14878 AGTGCATCGATGCATCAAGTGCATTCGATGTTTCAAAATAGCCCA-AGTGCATCGATGCATGGCT
1 AGTGCATCGATGCATCAAATGCATTCGATGTTT-AAATTAAATCAGAGTGCATCGATGCATGGAT
* *
14942 GGTGCATCGATGCATCAAATGCATTCGATGTTTTAATTAAATCAGAGTGCATCGATGCATGGAT
1 AGTGCATCGATGCATCAAATGCATTCGATGTTTAAATTAAATCAGAGTGCATCGATGCATGGAT
* * *
15006 AGTGCATCGGTGCAT-AGAATGCATTCGATGTTTCAATT-ATTCATTGA-TGCATCGATGCATGG
1 AGTGCATCGATGCATCA-AATGCATTCGATGTTTAAATTAAATCA--GAGTGCATCGATGCATGG
15068 TATTGATGCA
Statistics
Matches: 110, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
63 11 0.10
64 97 0.88
65 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.31
Consensus pattern (64 bp):
AGTGCATCGATGCATCAAATGCATTCGATGTTTAAATTAAATCAGAGTGCATCGATGCATGGAT
Found at i:16719 original size:7 final size:7
Alignment explanation
Indices: 16710--18917 Score: 3854
Period size: 7 Copynumber: 316.0 Consensus size: 7
16700 CTTGAATCCT
*
16710 AAACCCT
1 AAACCCC
*
16717 AAACCCT
1 AAACCCC
*
16724 AAACCCT
1 AAACCCC
*
16731 AAACCCT
1 AAACCCC
*
16738 AAACCCT
1 AAACCCC
*
16745 AAACCCT
1 AAACCCC
*
16752 AAACCCT
1 AAACCCC
*
16759 AAACCCT
1 AAACCCC
*
16766 AAACCCT
1 AAACCCC
*
16773 AAACCCT
1 AAACCCC
*
16780 AAACCCT
1 AAACCCC
*
16787 AAACCCT
1 AAACCCC
*
16794 AAACCCT
1 AAACCCC
*
16801 AAACCCT
1 AAACCCC
*
16808 AAACCCT
1 AAACCCC
*
16815 AAACCCT
1 AAACCCC
16822 AAACCCC
1 AAACCCC
16829 AAACCCC
1 AAACCCC
16836 AAACCCC
1 AAACCCC
16843 AAACCCC
1 AAACCCC
16850 AAACCCC
1 AAACCCC
16857 AAACCCC
1 AAACCCC
16864 AAACCCC
1 AAACCCC
16871 AAACCCC
1 AAACCCC
16878 AAACCCC
1 AAACCCC
16885 AAACCCC
1 AAACCCC
16892 AAACCCC
1 AAACCCC
16899 AAACCCC
1 AAACCCC
16906 AAACCCC
1 AAACCCC
16913 AAACCCC
1 AAACCCC
16920 AAACCCC
1 AAACCCC
16927 AAACCCC
1 AAACCCC
16934 AAACCCC
1 AAACCCC
16941 AAACCCC
1 AAACCCC
16948 AAACCCC
1 AAACCCC
16955 AAACCCC
1 AAACCCC
16962 AAACCCC
1 AAACCCC
16969 AAACCCC
1 AAACCCC
16976 AAACCCC
1 AAACCCC
16983 AAACCCC
1 AAACCCC
16990 AAACCCC
1 AAACCCC
16997 AAACCCC
1 AAACCCC
17004 AAACCCC
1 AAACCCC
17011 AAACCCC
1 AAACCCC
17018 AAACCCC
1 AAACCCC
17025 AAACCCC
1 AAACCCC
17032 AAACCCC
1 AAACCCC
17039 AAACCCC
1 AAACCCC
17046 AAACCCC
1 AAACCCC
17053 AAACCCC
1 AAACCCC
17060 AAACCCC
1 AAACCCC
17067 AAACCCC
1 AAACCCC
17074 AAACCCC
1 AAACCCC
17081 AAACCCC
1 AAACCCC
17088 AAACCCC
1 AAACCCC
17095 AAACCCC
1 AAACCCC
17102 AAACCCC
1 AAACCCC
17109 AAACCCC
1 AAACCCC
17116 AAACCCC
1 AAACCCC
17123 AAACCCC
1 AAACCCC
17130 AAACCCC
1 AAACCCC
17137 AAACCCC
1 AAACCCC
17144 AAACCCC
1 AAACCCC
17151 AAACCCC
1 AAACCCC
17158 AAACCCC
1 AAACCCC
17165 AAACCCC
1 AAACCCC
17172 AAACCCC
1 AAACCCC
17179 AAACCCC
1 AAACCCC
17186 AAACCCC
1 AAACCCC
17193 AAACCCC
1 AAACCCC
17200 AAACCCC
1 AAACCCC
17207 AAACCCC
1 AAACCCC
17214 AAACCCCCCC
1 AAA---CCCC
17224 AAACCCC
1 AAACCCC
17231 AAACCCC
1 AAACCCC
17238 AAACCCC
1 AAACCCC
17245 AAACCCC
1 AAACCCC
17252 AAACCCC
1 AAACCCC
17259 AAACCCC
1 AAACCCC
17266 AAACCCC
1 AAACCCC
17273 AAACCCC
1 AAACCCC
17280 AAACCCC
1 AAACCCC
17287 AAACCCC
1 AAACCCC
17294 AAACCCC
1 AAACCCC
17301 AAACCCC
1 AAACCCC
17308 AAACCCC
1 AAACCCC
17315 AAACCCC
1 AAACCCC
17322 AAA-CCC
1 AAACCCC
17328 AAACCCC
1 AAACCCC
17335 AAACCCC
1 AAACCCC
17342 AAACCCC
1 AAACCCC
17349 AAACCCC
1 AAACCCC
17356 AAACCCC
1 AAACCCC
17363 AAACCCC
1 AAACCCC
17370 AAACCCC
1 AAACCCC
17377 AAACCCC
1 AAACCCC
17384 AAACCCC
1 AAACCCC
17391 AAACCCC
1 AAACCCC
17398 AAACCCC
1 AAACCCC
17405 AAACCCC
1 AAACCCC
17412 AAACCCC
1 AAACCCC
17419 AAACCCC
1 AAACCCC
17426 AAACCCC
1 AAACCCC
17433 AAACCCC
1 AAACCCC
17440 AAACCCC
1 AAACCCC
17447 AAACCCC
1 AAACCCC
17454 AAACCCC
1 AAACCCC
17461 AAACCCC
1 AAACCCC
17468 AAACCCC
1 AAACCCC
17475 AAACCCC
1 AAACCCC
17482 AAACCCC
1 AAACCCC
17489 AAACCCC
1 AAACCCC
17496 -AACCCC
1 AAACCCC
17502 AAACCCC
1 AAACCCC
17509 AAACCCC
1 AAACCCC
17516 AAACCCC
1 AAACCCC
17523 AAACCCC
1 AAACCCC
17530 AAACCCC
1 AAACCCC
17537 AAACCCC
1 AAACCCC
17544 AAACCCC
1 AAACCCC
17551 AAACCCC
1 AAACCCC
17558 AAACCCC
1 AAACCCC
17565 AAACCCC
1 AAACCCC
17572 AAACCCC
1 AAACCCC
17579 AAACCCC
1 AAACCCC
17586 AAACCCC
1 AAACCCC
17593 AAACCCC
1 AAACCCC
17600 AAACCCC
1 AAACCCC
17607 AAACCCC
1 AAACCCC
17614 AAACCCC
1 AAACCCC
17621 AAACCCC
1 AAACCCC
17628 AAACCCC
1 AAACCCC
17635 AAACCCC
1 AAACCCC
17642 AAACCCC
1 AAACCCC
17649 AAACCCC
1 AAACCCC
17656 AAACCCC
1 AAACCCC
17663 AAACCCC
1 AAACCCC
17670 AAACCCC
1 AAACCCC
17677 AAACCCC
1 AAACCCC
17684 AAACCCC
1 AAACCCC
17691 AAACCCC
1 AAACCCC
17698 AAACCCC
1 AAACCCC
17705 AAACCCC
1 AAACCCC
17712 AAACCCC
1 AAACCCC
17719 AAACCCC
1 AAACCCC
17726 AAACCCC
1 AAACCCC
17733 AAACCCC
1 AAACCCC
17740 AAACCCC
1 AAACCCC
17747 AAACCCC
1 AAACCCC
17754 AAACCCC
1 AAACCCC
17761 AAACCCC
1 AAACCCC
17768 AAACCCC
1 AAACCCC
17775 AAACCCC
1 AAACCCC
17782 AAACCCC
1 AAACCCC
17789 AAACCCC
1 AAACCCC
17796 AAACCCC
1 AAACCCC
17803 AAACCCC
1 AAACCCC
17810 AAACCCC
1 AAACCCC
17817 AAACCCC
1 AAACCCC
17824 AAACCCC
1 AAACCCC
17831 AAACCCC
1 AAACCCC
17838 AAACCCC
1 AAACCCC
17845 AAACCCC
1 AAACCCC
17852 AAACCCC
1 AAACCCC
17859 AAACCCC
1 AAACCCC
17866 AAACCCC
1 AAACCCC
17873 AAACCCC
1 AAACCCC
17880 AAACCCC
1 AAACCCC
17887 AAACCCC
1 AAACCCC
17894 AAACCCC
1 AAACCCC
17901 AAACCCC
1 AAACCCC
17908 AAACCCC
1 AAACCCC
17915 AAACCCC
1 AAACCCC
17922 AAACCCC
1 AAACCCC
17929 AAACCCC
1 AAACCCC
17936 AAACCCC
1 AAACCCC
17943 AAACCCC
1 AAACCCC
17950 AAACCCC
1 AAACCCC
17957 AAACCCC
1 AAACCCC
17964 AAACCCC
1 AAACCCC
17971 AAACCCC
1 AAACCCC
17978 AAACCCC
1 AAACCCC
17985 AAACCCC
1 AAACCCC
17992 AAACCCC
1 AAACCCC
17999 AAACCCC
1 AAACCCC
18006 AAACCCC
1 AAACCCC
18013 AAACCCC
1 AAACCCC
18020 AAACCCC
1 AAACCCC
18027 AAACCCC
1 AAACCCC
18034 AAACCCC
1 AAACCCC
18041 AAACCCC
1 AAACCCC
18048 AAACCCC
1 AAACCCC
18055 AAACCCC
1 AAACCCC
18062 AAACCCC
1 AAACCCC
18069 AAACCCC
1 AAACCCC
18076 AAACCCC
1 AAACCCC
18083 AAACCCC
1 AAACCCC
18090 AAACCCC
1 AAACCCC
18097 AAACCCC
1 AAACCCC
18104 AAACCCC
1 AAACCCC
18111 AAACCCC
1 AAACCCC
18118 AAACCCC
1 AAACCCC
18125 AAACCCC
1 AAACCCC
18132 AAACCCC
1 AAACCCC
18139 AAACCCC
1 AAACCCC
18146 AAACCCC
1 AAACCCC
18153 AAACCCC
1 AAACCCC
18160 AAACCCC
1 AAACCCC
18167 AAACCCC
1 AAACCCC
18174 AAACCCC
1 AAACCCC
18181 AAACCCC
1 AAACCCC
18188 AAACCCC
1 AAACCCC
18195 AAACCCC
1 AAACCCC
18202 AAACCCC
1 AAACCCC
18209 AAACCCC
1 AAACCCC
18216 AAACCCC
1 AAACCCC
18223 AAACCCC
1 AAACCCC
18230 AAACCCC
1 AAACCCC
18237 AAACCCC
1 AAACCCC
18244 AAACCCC
1 AAACCCC
18251 AAACCCC
1 AAACCCC
18258 AAACCCC
1 AAACCCC
18265 AAACCCC
1 AAACCCC
18272 AAACCCC
1 AAACCCC
18279 AAACCCC
1 AAACCCC
18286 AAACCCC
1 AAACCCC
18293 AAACCCC
1 AAACCCC
18300 AAACCCC
1 AAACCCC
18307 AAACCCC
1 AAACCCC
18314 AAACCCC
1 AAACCCC
18321 AAACCCC
1 AAACCCC
18328 AAACCCC
1 AAACCCC
18335 AAACCCC
1 AAACCCC
18342 AAACCCC
1 AAACCCC
18349 AAACCCC
1 AAACCCC
18356 AAACCCC
1 AAACCCC
18363 AAACCCC
1 AAACCCC
18370 AAACCCC
1 AAACCCC
18377 AAACCCC
1 AAACCCC
18384 AAACCCC
1 AAACCCC
18391 AAACCCC
1 AAACCCC
18398 AAACCCC
1 AAACCCC
18405 AAACCCC
1 AAACCCC
18412 AAACCCC
1 AAACCCC
18419 AAACCCC
1 AAACCCC
18426 AAACCCC
1 AAACCCC
18433 AAACCCC
1 AAACCCC
18440 AAACCCC
1 AAACCCC
18447 AAACCCC
1 AAACCCC
18454 AAACCCC
1 AAACCCC
18461 AAACCCC
1 AAACCCC
18468 AAACCCC
1 AAACCCC
18475 AAACCCC
1 AAACCCC
18482 AAACCCC
1 AAACCCC
18489 AAACCCC
1 AAACCCC
18496 AAACCCC
1 AAACCCC
18503 AAACCCC
1 AAACCCC
18510 AAACCCC
1 AAACCCC
18517 AAACCCC
1 AAACCCC
18524 AAACCCC
1 AAACCCC
18531 AAACCCC
1 AAACCCC
18538 AAACCCC
1 AAACCCC
18545 AAACCCC
1 AAACCCC
18552 AAACCCC
1 AAACCCC
18559 AAACCCC
1 AAACCCC
18566 AAACCCC
1 AAACCCC
18573 AAACCCC
1 AAACCCC
18580 AAACCCC
1 AAACCCC
18587 AAACCCC
1 AAACCCC
18594 AAACCCC
1 AAACCCC
18601 AAACCCC
1 AAACCCC
18608 AAACCCC
1 AAACCCC
18615 AAACCCC
1 AAACCCC
18622 -AACCCC
1 AAACCCC
18628 -AACCCC
1 AAACCCC
18634 AAACCCC
1 AAACCCC
18641 AAACCCC
1 AAACCCC
18648 AAACCCC
1 AAACCCC
18655 AAACCCC
1 AAACCCC
18662 AAACCCC
1 AAACCCC
18669 AAACCCC
1 AAACCCC
18676 AAACCCC
1 AAACCCC
18683 AAACCCC
1 AAACCCC
18690 AAACCCC
1 AAACCCC
18697 AAACCCC
1 AAACCCC
18704 AAACCCC
1 AAACCCC
18711 AAACCCC
1 AAACCCC
18718 AAACCCC
1 AAACCCC
*
18725 ---CCCT
1 AAACCCC
*
18729 AACCCCC
1 AAACCCC
* *
18736 TAACCCT
1 AAACCCC
*
18743 AACCCCC
1 AAACCCC
*
18750 TAACCCC
1 AAACCCC
* *
18757 TAACCCT
1 AAACCCC
*
18764 AGACCCC
1 AAACCCC
* *
18771 TAACCCT
1 AAACCCC
* *
18778 AGACCCT
1 AAACCCC
* *
18785 AGACCCT
1 AAACCCC
* *
18792 AGACCCT
1 AAACCCC
* *
18799 AGACCCT
1 AAACCCC
* *
18806 AGACCCT
1 AAACCCC
* *
18813 AGACCCT
1 AAACCCC
* *
18820 AGACCCT
1 AAACCCC
* *
18827 AGACCCT
1 AAACCCC
*
18834 AAACCCT
1 AAACCCC
*
18841 AAACCCT
1 AAACCCC
*
18848 AAACCCT
1 AAACCCC
*
18855 AAACCCT
1 AAACCCC
*
18862 AAACCCT
1 AAACCCC
*
18869 AAACCCT
1 AAACCCC
*
18876 AAACCCT
1 AAACCCC
*
18883 AAACCCT
1 AAACCCC
*
18890 AAACCCT
1 AAACCCC
*
18897 AAACCCT
1 AAACCCC
*
18904 AAACCCT
1 AAACCCC
18911 AAACCCC
1 AAACCCC
18918 GGACCCCGGA
Statistics
Matches: 2170, Mismatches: 22, Indels: 18
0.98 0.01 0.01
Matches are distributed among these distances:
4 3 0.00
6 24 0.01
7 2136 0.98
10 7 0.00
ACGTcount: A:0.42, C:0.56, G:0.00, T:0.02
Consensus pattern (7 bp):
AAACCCC
Found at i:18734 original size:8 final size:8
Alignment explanation
Indices: 18723--18762 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
18713 ACCCCAAACC
18723 CCCCCTAA
1 CCCCCTAA
18731 CCCCCTAA
1 CCCCCTAA
18739 --CCCTAA
1 CCCCCTAA
18745 CCCCCTAA
1 CCCCCTAA
18753 -CCCCTAA
1 CCCCCTAA
18760 CCC
1 CCC
18763 TAGACCCCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
6 6 0.21
7 7 0.24
8 16 0.55
ACGTcount: A:0.25, C:0.62, G:0.00, T:0.12
Consensus pattern (8 bp):
CCCCCTAA
Found at i:18923 original size:7 final size:7
Alignment explanation
Indices: 18913--19113 Score: 222
Period size: 7 Copynumber: 29.6 Consensus size: 7
18903 TAAACCCTAA
18913 ACCCCGG
1 ACCCCGG
18920 ACCCCGG
1 ACCCCGG
18927 ACCCCGG
1 ACCCCGG
18934 ACCCCGG
1 ACCCCGG
18941 ACCCCGG
1 ACCCCGG
18948 ACCCCGG
1 ACCCCGG
18955 ACCCCGG
1 ACCCCGG
18962 ACCCCGG
1 ACCCCGG
18969 ACCCCGG
1 ACCCCGG
18976 ACCCCCGG
1 A-CCCCGG
18984 A-CCCGG
1 ACCCCGG
18990 ACCCCGG
1 ACCCCGG
18997 A-CCCGG
1 ACCCCGG
19003 ACCCC-G
1 ACCCCGG
19009 ACCCCGG
1 ACCCCGG
*
19016 ACCCCCG
1 ACCCCGG
*
19023 ACCCCTAG
1 ACCCC-GG
19031 ACCCC-G
1 ACCCCGG
*
19037 ACCCCTAG
1 ACCCC-GG
19045 ACCCC-G
1 ACCCCGG
*
19051 ACCCCCG
1 ACCCCGG
19058 ACCCC--
1 ACCCCGG
19063 -CCCC-G
1 ACCCCGG
*
19068 ACCCCCG
1 ACCCCGG
*
19075 ACCCCCG
1 ACCCCGG
*
19082 ACCCCCG
1 ACCCCGG
*
19089 ACCCCGA
1 ACCCCGG
*
19096 ACCCCGA
1 ACCCCGG
*
19103 ACCCCGA
1 ACCCCGG
19110 ACCC
1 ACCC
19114 TGAACCCTAA
Statistics
Matches: 179, Mismatches: 4, Indels: 22
0.87 0.02 0.11
Matches are distributed among these distances:
4 4 0.02
6 34 0.19
7 122 0.68
8 19 0.11
ACGTcount: A:0.17, C:0.61, G:0.21, T:0.01
Consensus pattern (7 bp):
ACCCCGG
Found at i:19118 original size:7 final size:7
Alignment explanation
Indices: 19109--19204 Score: 129
Period size: 7 Copynumber: 13.7 Consensus size: 7
19099 CCGAACCCCG
*
19109 AACCCTG
1 AACCCTA
19116 AACCCTA
1 AACCCTA
19123 AACCCTA
1 AACCCTA
**
19130 AACCCCG
1 AACCCTA
**
19137 AACCCCG
1 AACCCTA
**
19144 AACCCCG
1 AACCCTA
19151 AACCCTA
1 AACCCTA
19158 AACCCTA
1 AACCCTA
19165 AACCCTA
1 AACCCTA
19172 AACCCTA
1 AACCCTA
19179 AACCCTA
1 AACCCTA
19186 AACCCTA
1 AACCCTA
19193 AACCCTA
1 AACCCTA
19200 AACCC
1 AACCC
19205 CGGACCCCGG
Statistics
Matches: 84, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 84 1.00
ACGTcount: A:0.39, C:0.47, G:0.04, T:0.10
Consensus pattern (7 bp):
AACCCTA
Found at i:19118 original size:14 final size:14
Alignment explanation
Indices: 18912--19285 Score: 192
Period size: 14 Copynumber: 27.1 Consensus size: 14
18902 CTAAACCCTA
*
18912 AACCCCGGACCCCG
1 AACCCCGAACCCCG
* *
18926 GACCCCGGACCCCG
1 AACCCCGAACCCCG
* *
18940 GACCCCGGACCCCG
1 AACCCCGAACCCCG
* *
18954 GACCCCGGACCCCG
1 AACCCCGAACCCCG
* *
18968 GACCCCGGACCCCCG
1 AACCCC-GAACCCCG
* *
18983 GA-CCCGGACCCCG
1 AACCCCGAACCCCG
* *
18996 GA-CCCGGACCCCG
1 AACCCCGAACCCCG
*
19009 -ACCCCGGACCCCCG
1 AACCCC-GAACCCCG
*
19023 -ACCCCTAGACCCCG
1 AACCCCGA-ACCCCG
*
19037 -ACCCCTAGACCCCG
1 AACCCCGA-ACCCCG
*
19051 ACCCCCG-ACCCC-
1 AACCCCGAACCCCG
*
19063 --CCCCGACCCCCG
1 AACCCCGAACCCCG
* *
19075 ACCCCCGACCCCCG
1 AACCCCGAACCCCG
19089 -ACCCCGAACCCCG
1 AACCCCGAACCCCG
*
19102 AACCCCGAACCCTG
1 AACCCCGAACCCCG
** **
19116 AACCCTAAACCCTA
1 AACCCCGAACCCCG
19130 AACCCCGAACCCCG
1 AACCCCGAACCCCG
**
19144 AACCCCGAACCCTA
1 AACCCCGAACCCCG
** **
19158 AACCCTAAACCCTA
1 AACCCCGAACCCCG
** **
19172 AACCCTAAACCCTA
1 AACCCCGAACCCCG
** **
19186 AACCCTAAACCCTA
1 AACCCCGAACCCCG
*
19200 AACCCCGGACCCCG
1 AACCCCGAACCCCG
* *
19214 GACCCCGGACCCCG
1 AACCCCGAACCCCG
* *
19228 GACCCCGGACCCCG
1 AACCCCGAACCCCG
* *
19242 AGCCCCGAGCCCCG
1 AACCCCGAACCCCG
* *
19256 AGCCCCGAGCCCCG
1 AACCCCGAACCCCG
* *
19270 AGCCCCGAGCCCCG
1 AACCCCGAACCCCG
19284 AA
1 AA
19286 AATAATTCAT
Statistics
Matches: 313, Mismatches: 37, Indels: 20
0.85 0.10 0.05
Matches are distributed among these distances:
10 5 0.02
11 4 0.01
12 1 0.00
13 39 0.12
14 252 0.81
15 12 0.04
ACGTcount: A:0.22, C:0.56, G:0.18, T:0.03
Consensus pattern (14 bp):
AACCCCGAACCCCG
Found at i:19118 original size:21 final size:21
Alignment explanation
Indices: 18912--19285 Score: 192
Period size: 21 Copynumber: 18.1 Consensus size: 21
18902 CTAAACCCTA
* *
18912 AACCCCGGACCCCGGACCCCG
1 AACCCCGAACCCCGAACCCCG
* * *
18933 GACCCCGGACCCCGGACCCCG
1 AACCCCGAACCCCGAACCCCG
* * *
18954 GACCCCGGACCCCGGACCCCGG
1 AACCCCGAACCCCGAACCCC-G
* * *
18976 ACCCCCGGA-CCCGGACCCCG
1 AACCCCGAACCCCGAACCCCG
* *
18996 GA-CCCGGACCCCG-ACCCCGG
1 AACCCCGAACCCCGAACCCC-G
* *
19016 ACCCCCG-ACCCCTAGACCCCG
1 AACCCCGAACCCCGA-ACCCCG
* *
19037 -ACCCCTAGACCCCGACCCCCG
1 AACCCCGA-ACCCCGAACCCCG
*
19058 -ACCCC---CCCCGACCCCCG
1 AACCCCGAACCCCGAACCCCG
* *
19075 ACCCCCGACCCCCG-ACCCCG
1 AACCCCGAACCCCGAACCCCG
*
19095 AACCCCGAACCCCGAACCCTG
1 AACCCCGAACCCCGAACCCCG
** **
19116 AACCCTAAACCCTAAACCCCG
1 AACCCCGAACCCCGAACCCCG
**
19137 AACCCCGAACCCCGAACCCTA
1 AACCCCGAACCCCGAACCCCG
** ** **
19158 AACCCTAAACCCTAAACCCTA
1 AACCCCGAACCCCGAACCCCG
** ** **
19179 AACCCTAAACCCTAAACCCTA
1 AACCCCGAACCCCGAACCCCG
* *
19200 AACCCCGGACCCCGGACCCCG
1 AACCCCGAACCCCGAACCCCG
* * *
19221 GACCCCGGACCCCGGACCCCG
1 AACCCCGAACCCCGAACCCCG
* * *
19242 AGCCCCGAGCCCCGAGCCCCG
1 AACCCCGAACCCCGAACCCCG
* * *
19263 AGCCCCGAGCCCCGAGCCCCG
1 AACCCCGAACCCCGAACCCCG
19284 AA
1 AA
19286 AATAATTCAT
Statistics
Matches: 292, Mismatches: 48, Indels: 26
0.80 0.13 0.07
Matches are distributed among these distances:
17 12 0.04
18 4 0.01
19 11 0.04
20 32 0.11
21 214 0.73
22 19 0.07
ACGTcount: A:0.22, C:0.56, G:0.18, T:0.03
Consensus pattern (21 bp):
AACCCCGAACCCCGAACCCCG
Found at i:19134 original size:35 final size:35
Alignment explanation
Indices: 19095--19218 Score: 176
Period size: 35 Copynumber: 3.5 Consensus size: 35
19085 CCCGACCCCG
19095 AACCCCGAACCCCGAACCCTGAACCCTAAACCCTA
1 AACCCCGAACCCCGAACCCTGAACCCTAAACCCTA
*
19130 AACCCCGAACCCCGAACCCCGAACCCTAAACCCTA
1 AACCCCGAACCCCGAACCCTGAACCCTAAACCCTA
** ** *
19165 AACCCTAAACCCTAAACCCTAAACCCTAAACCCTA
1 AACCCCGAACCCCGAACCCTGAACCCTAAACCCTA
* *
19200 AACCCCGGACCCCGGACCC
1 AACCCCGAACCCCGAACCC
19219 CGGACCCCGG
Statistics
Matches: 76, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 76 1.00
ACGTcount: A:0.35, C:0.49, G:0.08, T:0.08
Consensus pattern (35 bp):
AACCCCGAACCCCGAACCCTGAACCCTAAACCCTA
Found at i:19211 original size:7 final size:7
Alignment explanation
Indices: 19201--19241 Score: 82
Period size: 7 Copynumber: 5.9 Consensus size: 7
19191 TAAACCCTAA
19201 ACCCCGG
1 ACCCCGG
19208 ACCCCGG
1 ACCCCGG
19215 ACCCCGG
1 ACCCCGG
19222 ACCCCGG
1 ACCCCGG
19229 ACCCCGG
1 ACCCCGG
19236 ACCCCG
1 ACCCCG
19242 AGCCCCGAGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.15, C:0.59, G:0.27, T:0.00
Consensus pattern (7 bp):
ACCCCGG
Found at i:19247 original size:7 final size:7
Alignment explanation
Indices: 19237--19284 Score: 96
Period size: 7 Copynumber: 6.9 Consensus size: 7
19227 GGACCCCGGA
19237 CCCCGAG
1 CCCCGAG
19244 CCCCGAG
1 CCCCGAG
19251 CCCCGAG
1 CCCCGAG
19258 CCCCGAG
1 CCCCGAG
19265 CCCCGAG
1 CCCCGAG
19272 CCCCGAG
1 CCCCGAG
19279 CCCCGA
1 CCCCGA
19285 AAATAATTCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 41 1.00
ACGTcount: A:0.15, C:0.58, G:0.27, T:0.00
Consensus pattern (7 bp):
CCCCGAG
Found at i:20583 original size:18 final size:17
Alignment explanation
Indices: 20529--20577 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
20519 TTGGAACCTT
* *
20529 AGTGCATCGGTGCACTAA
1 AGTGCATCGATGCA-TCA
20547 GAGTGCATCGATGCATCA
1 -AGTGCATCGATGCATCA
20565 AGTGCATTCGATG
1 AGTGCA-TCGATG
20578 TTTCAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 6 0.22
18 8 0.30
19 13 0.48
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (17 bp):
AGTGCATCGATGCATCA
Found at i:20661 original size:64 final size:64
Alignment explanation
Indices: 20548--20738 Score: 217
Period size: 64 Copynumber: 3.0 Consensus size: 64
20538 GTGCACTAAG
* * *** *
20548 AGTGCATCGATGCATCAAGTGCATTCGATGTTTCAAAATAGCCCA-AGTGCATCGATGCATGGCT
1 AGTGCATCGATGCATCAAATGCATTCGATGTTT-AAATTAAATCAGAGTGCATCGATGCATGGAT
* *
20612 GGTGCATCGATGCATCAAATGCATTCGATGTTTTAATTAAATCAGAGTGCATCGATGCATGGAT
1 AGTGCATCGATGCATCAAATGCATTCGATGTTTAAATTAAATCAGAGTGCATCGATGCATGGAT
* * * *
20676 AGTGCATCGGTGCAT-AGAATGCATTCGATGTTTCAATTTATTCATTGA-TGCATCGATGCATGG
1 AGTGCATCGATGCATCA-AATGCATTCGATGTTTAAATTAAATCA--GAGTGCATCGATGCATGG
20739 TATTGATGCA
Statistics
Matches: 110, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
63 7 0.06
64 86 0.78
65 15 0.14
66 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.31
Consensus pattern (64 bp):
AGTGCATCGATGCATCAAATGCATTCGATGTTTAAATTAAATCAGAGTGCATCGATGCATGGAT
Found at i:32798 original size:45 final size:45
Alignment explanation
Indices: 32734--32840 Score: 214
Period size: 45 Copynumber: 2.4 Consensus size: 45
32724 CGGTGCACTA
32734 AGAGTGCATCGATGCATAAAATGCATTCGATGTTTCAAAATAGCC
1 AGAGTGCATCGATGCATAAAATGCATTCGATGTTTCAAAATAGCC
32779 AGAGTGCATCGATGCATAAAATGCATTCGATGTTTCAAAATAGCC
1 AGAGTGCATCGATGCATAAAATGCATTCGATGTTTCAAAATAGCC
32824 AGAGTGCATCGATGCAT
1 AGAGTGCATCGATGCAT
32841 GGTTTGTGCA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 62 1.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (45 bp):
AGAGTGCATCGATGCATAAAATGCATTCGATGTTTCAAAATAGCC
Found at i:32874 original size:45 final size:45
Alignment explanation
Indices: 32825--32912 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
32815 AAAATAGCCA
* * *
32825 GAGTGCATCGATGCATGGTTTGTGCATCGATGCATCAAATGCACT
1 GAGTGCATCGATGCATGGTATATGCATCGATGCATAAAATGCACT
*
32870 GAGTGCATCGATGCATGGTATATGCATCGATTCATAAAATGCA
1 GAGTGCATCGATGCATGGTATATGCATCGATGCATAAAATGCA
32913 TTTGATGTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (45 bp):
GAGTGCATCGATGCATGGTATATGCATCGATGCATAAAATGCACT
Found at i:34041 original size:21 final size:21
Alignment explanation
Indices: 34017--34060 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
34007 GTACCGGAGG
* *
34017 AGGAGGAGCACGAGAAGAGCT
1 AGGAGCAGCACGAGAAGAACT
* *
34038 AGGAGCAGCTCGTGAAGAACT
1 AGGAGCAGCACGAGAAGAACT
34059 AG
1 AG
34061 CTCCCGGAGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.16, G:0.39, T:0.09
Consensus pattern (21 bp):
AGGAGCAGCACGAGAAGAACT
Found at i:35672 original size:20 final size:21
Alignment explanation
Indices: 35604--35675 Score: 76
Period size: 21 Copynumber: 3.4 Consensus size: 21
35594 GACCTTGTGC
* *
35604 ATCGATGCACCTTCATGGTGT
1 ATCGATGCACATTCAAGGTGT
*
35625 ATCGATGCACATTCAAGGATGC
1 ATCGATGCACATTCAAGG-TGT
*
35647 ATCGATGCAC-TGT-TAGGTGT
1 ATCGATGCACAT-TCAAGGTGT
35667 ATCGATGCA
1 ATCGATGCA
35676 TTAAGCACAA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
20 11 0.25
21 20 0.45
22 13 0.30
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (21 bp):
ATCGATGCACATTCAAGGTGT
Found at i:39530 original size:22 final size:21
Alignment explanation
Indices: 39488--39527 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
39478 GAGTTTATTT
*
39488 TCATTTTTCAATTTTGAAATA
1 TCATTTTTCAATTTTAAAATA
39509 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
39528 ATAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.07, G:0.03, T:0.55
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAATA
Found at i:41534 original size:19 final size:19
Alignment explanation
Indices: 41510--41561 Score: 95
Period size: 19 Copynumber: 2.7 Consensus size: 19
41500 AATAGTCAGA
*
41510 GTGCATCGATGCATGGTTT
1 GTGCATCGATGCATGGTAT
41529 GTGCATCGATGCATGGTAT
1 GTGCATCGATGCATGGTAT
41548 GTGCATCGATGCAT
1 GTGCATCGATGCAT
41562 AAAATGCATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.19, C:0.17, G:0.31, T:0.33
Consensus pattern (19 bp):
GTGCATCGATGCATGGTAT
Found at i:41564 original size:83 final size:84
Alignment explanation
Indices: 41465--41626 Score: 222
Period size: 83 Copynumber: 1.9 Consensus size: 84
41455 TGCACTAAGA
* *
41465 GTGCATTGATGAATAAAATGCATTCGATGTTTCAAAATAGT-CA-GAGTGCATCGATGCATGG-T
1 GTGCATCGATGAATAAAATGCATTCGATG-TTCAAAATAATCCATG-GTGCATCGATGCATGGAT
*
41527 TTGTGCATCGATGCATGGTAT
64 TGGTGCATCGATGCATGGTAT
* * **
41548 GTGCATCGATGCATAAAATGCATTTGATGTTCAATTTAATCCATGGTGCATCGATGCATGGATTG
1 GTGCATCGATGAATAAAATGCATTCGATGTTCAAAATAATCCATGGTGCATCGATGCATGGATTG
41613 GTGCATCGATGCAT
66 GTGCATCGATGCAT
41627 CACTTTGAAA
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
82 8 0.12
83 44 0.64
84 17 0.25
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.33
Consensus pattern (84 bp):
GTGCATCGATGAATAAAATGCATTCGATGTTCAAAATAATCCATGGTGCATCGATGCATGGATTG
GTGCATCGATGCATGGTAT
Found at i:46219 original size:73 final size:74
Alignment explanation
Indices: 46119--46272 Score: 274
Period size: 73 Copynumber: 2.1 Consensus size: 74
46109 TAAACCACAT
* *
46119 TCAAAAGGGGGGGGGAATCATTGAATTTGAAATAAAACATACTCAAAACAAGAAATTGCATACAG
1 TCAAAAAGGGGGGGG-ATCATTAAATTTGAAATAAAACATACTCAAAACAAGAAATTGCATACAG
46184 ATCAAAAGAA
65 ATCAAAAGAA
46194 TCAAAAAGGGGGGGG-TCATTAAATTTGAAATAAAACATACTCAAAACAAGAAATTGCATACAGA
1 TCAAAAAGGGGGGGGATCATTAAATTTGAAATAAAACATACTCAAAACAAGAAATTGCATACAGA
46258 TCAAAAGAA
66 TCAAAAGAA
46267 TCAAAA
1 TCAAAA
46273 CGGAACGATA
Statistics
Matches: 77, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
73 63 0.82
75 14 0.18
ACGTcount: A:0.51, C:0.12, G:0.18, T:0.19
Consensus pattern (74 bp):
TCAAAAAGGGGGGGGATCATTAAATTTGAAATAAAACATACTCAAAACAAGAAATTGCATACAGA
TCAAAAGAA
Found at i:51351 original size:23 final size:23
Alignment explanation
Indices: 51319--51398 Score: 81
Period size: 23 Copynumber: 3.4 Consensus size: 23
51309 GAGTTGAGGG
*
51319 TTCTACGTGGTCCTTCGGGACAA
1 TTCTATGTGGTCCTTCGGGACAA
* **
51342 TTCTATGTGGTCATTCAAGACAAA
1 TTCTATGTGGTCCTTCGGGAC-AA
*
51366 TTATAT-TCGGTCCTTCGGGACAA
1 TTCTATGT-GGTCCTTCGGGACAA
*
51389 ATCTATGTGG
1 TTCTATGTGG
51399 AACTTCGGTG
Statistics
Matches: 44, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
23 26 0.59
24 18 0.41
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.34
Consensus pattern (23 bp):
TTCTATGTGGTCCTTCGGGACAA
Found at i:51387 original size:24 final size:24
Alignment explanation
Indices: 51325--51398 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 24
51315 AGGGTTCTAC
*
51325 GTGGTCCTTCGGGAC-AATTCTAT
1 GTGGTCCTTCGGGACAAATTATAT
* **
51348 GTGGTCATTCAAGACAAATTATAT
1 GTGGTCCTTCGGGACAAATTATAT
*
51372 -TCGGTCCTTCGGGACAAA-TCTAT
1 GT-GGTCCTTCGGGACAAATTATAT
51395 GTGG
1 GTGG
51399 AACTTCGGTG
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
23 19 0.47
24 21 0.52
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.32
Consensus pattern (24 bp):
GTGGTCCTTCGGGACAAATTATAT
Found at i:54680 original size:45 final size:45
Alignment explanation
Indices: 54628--54727 Score: 191
Period size: 45 Copynumber: 2.2 Consensus size: 45
54618 ACATGAAGAA
54628 CATCGATGCACCCATTAAAAATGGAAACATCAAATGCAATTAGTG
1 CATCGATGCACCCATTAAAAATGGAAACATCAAATGCAATTAGTG
*
54673 CATCGATGCACCCATTAAAAATGGAAACATCGAATGCAATTAGTG
1 CATCGATGCACCCATTAAAAATGGAAACATCAAATGCAATTAGTG
54718 CATCGATGCA
1 CATCGATGCA
54728 TAAGGAGTGC
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 54 1.00
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.22
Consensus pattern (45 bp):
CATCGATGCACCCATTAAAAATGGAAACATCAAATGCAATTAGTG
Found at i:54788 original size:63 final size:64
Alignment explanation
Indices: 54668--54806 Score: 156
Period size: 63 Copynumber: 2.2 Consensus size: 64
54658 CAAATGCAAT
* * *
54668 TAGTGCATCGATGCACCCATTAAAAATGGAAACATCGAATGCAATTAGTGCATCGATGCATAAGG
1 TAGTGCATCGATACACCCATTAAAAATGGAAACATCGAAGGCAATTAGTGCACCGATGCAT-AGG
* * * ** * * *
54733 -AGTGCATCGATACACCCCTT-AAGATTGAAACATCGAAGGTGATTTGTGTACCGATGCATGGG
1 TAGTGCATCGATACACCCATTAAAAATGGAAACATCGAAGGCAATTAGTGCACCGATGCATAGG
54795 TAGTGCATCGAT
1 TAGTGCATCGAT
54807 GCACATGTTA
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
62 2 0.03
63 42 0.68
64 18 0.29
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (64 bp):
TAGTGCATCGATACACCCATTAAAAATGGAAACATCGAAGGCAATTAGTGCACCGATGCATAGG
Found at i:55577 original size:21 final size:21
Alignment explanation
Indices: 55551--55593 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
55541 TTTTCGGGCT
* *
55551 AGGGGAATCGGTACCCATTCA
1 AGGGGAACCGATACCCATTCA
*
55572 AGGGGAACCGATACCCCTTCA
1 AGGGGAACCGATACCCATTCA
55593 A
1 A
55594 CGAAATGAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAACCGATACCCATTCA
Found at i:55677 original size:69 final size:65
Alignment explanation
Indices: 55573--55723 Score: 178
Period size: 69 Copynumber: 2.3 Consensus size: 65
55563 ACCCATTCAA
* * *
55573 GGGGAACCGATACCCCTTCAACGAAATGAATTTCCAGAATGCAAGAGGGGAATCGATACCCCCAA
1 GGGGAACCGATACCCCCTCAACGAAATGAAATTCCAGAATGCAAGAGGGGAACCGATA--CCC-A
55638 GGG
63 GGG
* * * *
55641 GGGGGACCGATACCCCCTCATCGTATAA-GAAATTCCAGAATGCTATAGGGGAACCGATACCCAG
1 GGGGAACCGATACCCCCTCAACG-A-AATGAAATTCCAGAATGCAAGAGGGGAACCGATACCCAG
55705 GG
64 GG
*
55707 GGGGAACCGATTCCCCC
1 GGGGAACCGATACCCCC
55724 ATGAGAAAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
66 19 0.26
67 3 0.04
68 20 0.28
69 28 0.39
70 2 0.03
ACGTcount: A:0.30, C:0.27, G:0.27, T:0.15
Consensus pattern (65 bp):
GGGGAACCGATACCCCCTCAACGAAATGAAATTCCAGAATGCAAGAGGGGAACCGATACCCAGGG
Found at i:56057 original size:29 final size:29
Alignment explanation
Indices: 56023--56094 Score: 117
Period size: 29 Copynumber: 2.5 Consensus size: 29
56013 CATATTATGA
**
56023 TACATGACATGAATTTGTATTAAATGTAT
1 TACATGACATGAATTCATATTAAATGTAT
*
56052 TACATGACATGAATTCATATTATATGTAT
1 TACATGACATGAATTCATATTAAATGTAT
56081 TACATGACATGAAT
1 TACATGACATGAAT
56095 ATGCAGAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (29 bp):
TACATGACATGAATTCATATTAAATGTAT
Found at i:56149 original size:30 final size:31
Alignment explanation
Indices: 56109--56167 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
56099 AGAAAAGTTC
*
56109 TATGCACTATGTGATAAAGGTATGTAAATGA
1 TATGCACTATGTGATAAAGGTATGGAAATGA
*
56140 TATGC-CTATGTGTTAAAGGTATGGAAAT
1 TATGCACTATGTGATAAAGGTATGGAAAT
56168 CCTATGTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.36, C:0.07, G:0.24, T:0.34
Consensus pattern (31 bp):
TATGCACTATGTGATAAAGGTATGGAAATGA
Found at i:56461 original size:22 final size:22
Alignment explanation
Indices: 56387--56453 Score: 134
Period size: 22 Copynumber: 3.0 Consensus size: 22
56377 TTATGGACAT
56387 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
56409 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
56431 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
56453 A
1 A
56454 TTTATACGAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.27
Consensus pattern (22 bp):
AATTCTACGGGCACTTCGGTGC
Found at i:62520 original size:21 final size:21
Alignment explanation
Indices: 62494--62536 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
62484 TTTTCGGGCT
* *
62494 AGGGGAATCGGTACCCATTCA
1 AGGGGAACCGATACCCATTCA
*
62515 AGGGGAACCGATACCCCTTCA
1 AGGGGAACCGATACCCATTCA
62536 A
1 A
62537 CGAAATGAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAACCGATACCCATTCA
Found at i:62656 original size:69 final size:68
Alignment explanation
Indices: 62516--62669 Score: 195
Period size: 70 Copynumber: 2.2 Consensus size: 68
62506 ACCCATTCAA
* * *
62516 GGGGAACCGATACCCCTTCAACGAAATGAATTTCCAGAATGCAAGAGGGGAATCGATACCCCCAG
1 GGGGAACCGATACCCCCTCAACGAAATGAAATTCCAGAATGCAAGAGGGGAACCGATACCCCCA-
62581 GGGG
65 GGGG
* * * *
62585 GGGGGACCGATACCCCCTCATCGTATAA-GAAATTCCAGAATGCTATAGGGGAACCGATA-CCCC
1 GGGGAACCGATACCCCCTCAACG-A-AATGAAATTCCAGAATGCAAGAGGGGAACCGATACCCCC
62648 AGGGG
64 AGGGG
*
62653 GGGGAACCGATTCCCCC
1 GGGGAACCGATACCCCC
62670 ATGAGAAAAA
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
68 19 0.26
69 25 0.34
70 28 0.38
71 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.29, T:0.15
Consensus pattern (68 bp):
GGGGAACCGATACCCCCTCAACGAAATGAAATTCCAGAATGCAAGAGGGGAACCGATACCCCCAG
GGG
Found at i:63006 original size:29 final size:29
Alignment explanation
Indices: 62972--63043 Score: 117
Period size: 29 Copynumber: 2.5 Consensus size: 29
62962 CATATTATGA
**
62972 TACATGACATGAATTTGTATTAAATGTAT
1 TACATGACATGAATTCATATTAAATGTAT
*
63001 TACATGACATGAATTCATATTATATGTAT
1 TACATGACATGAATTCATATTAAATGTAT
63030 TACATGACATGAAT
1 TACATGACATGAAT
63044 ATGCAGAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (29 bp):
TACATGACATGAATTCATATTAAATGTAT
Found at i:63098 original size:30 final size:31
Alignment explanation
Indices: 63058--63116 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
63048 AGAAAAGTTC
*
63058 TATGCACTATGTGATAAAGGTATGTAAATGA
1 TATGCACTATGTGATAAAGGTATGGAAATGA
*
63089 TATGC-CTATGTGTTAAAGGTATGGAAAT
1 TATGCACTATGTGATAAAGGTATGGAAAT
63117 CCTATGTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.36, C:0.07, G:0.24, T:0.34
Consensus pattern (31 bp):
TATGCACTATGTGATAAAGGTATGGAAATGA
Found at i:63410 original size:22 final size:22
Alignment explanation
Indices: 63336--63402 Score: 134
Period size: 22 Copynumber: 3.0 Consensus size: 22
63326 TTATGGACAT
63336 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
63358 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
63380 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
63402 A
1 A
63403 TTTATACGAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.27
Consensus pattern (22 bp):
AATTCTACGGGCACTTCGGTGC
Found at i:67611 original size:29 final size:29
Alignment explanation
Indices: 67578--67645 Score: 136
Period size: 29 Copynumber: 2.3 Consensus size: 29
67568 CAACAATTGG
67578 TAACAATTGAACAATTGATATCCTTTTGT
1 TAACAATTGAACAATTGATATCCTTTTGT
67607 TAACAATTGAACAATTGATATCCTTTTGT
1 TAACAATTGAACAATTGATATCCTTTTGT
67636 TAACAATTGA
1 TAACAATTGA
67646 TATATTTTTC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (29 bp):
TAACAATTGAACAATTGATATCCTTTTGT
Found at i:67663 original size:23 final size:21
Alignment explanation
Indices: 67616--67660 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
67606 TTAACAATTG
* *
67616 AACAATTGATATCCTTTTGTT
1 AACAATTGATATACTTTTATT
*
67637 AACAATTGATATATTTTTCATT
1 AACAATTGATATACTTTT-ATT
67659 AA
1 AA
67661 ACATTTTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.36, C:0.11, G:0.07, T:0.47
Consensus pattern (21 bp):
AACAATTGATATACTTTTATT
Found at i:67907 original size:19 final size:20
Alignment explanation
Indices: 67885--67926 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
67875 CTGTATAAAT
67885 AGTACCGATA-CGTTTGAAC
1 AGTACCGATATCGTTTGAAC
*
67904 AGTACCGATATTGTTTGAAC
1 AGTACCGATATCGTTTGAAC
67924 AGT
1 AGT
67927 GATGAACAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (20 bp):
AGTACCGATATCGTTTGAAC
Found at i:68069 original size:21 final size:21
Alignment explanation
Indices: 68043--68084 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
68033 ATTTGAATTT
*
68043 TATGAAGAGGTATCGATACCC
1 TATGAAGAGGTACCGATACCC
*
68064 TATGAAGGGGTACCGATACCC
1 TATGAAGAGGTACCGATACCC
68085 CCTGTACGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.21
Consensus pattern (21 bp):
TATGAAGAGGTACCGATACCC
Found at i:78807 original size:20 final size:19
Alignment explanation
Indices: 78784--78829 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 19
78774 CGATATACCA
78784 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
78804 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
78824 GGTAAA
1 GGTAAA
78830 TTTAAAAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:78974 original size:20 final size:20
Alignment explanation
Indices: 78951--78998 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
78941 CGATATAACA
*
78951 GGTAAAATTATGATAAAACC
1 GGTAAAATAATGATAAAACC
78971 GGTAACAA-AATGATAAAACC
1 GGTAA-AATAATGATAAAACC
78991 GGTAAAAT
1 GGTAAAAT
78999 GATACCGGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 2 0.08
20 21 0.84
21 2 0.08
ACGTcount: A:0.52, C:0.10, G:0.17, T:0.21
Consensus pattern (20 bp):
GGTAAAATAATGATAAAACC
Found at i:81270 original size:21 final size:21
Alignment explanation
Indices: 81223--81287 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
81213 AAGACAATCA
* *
81223 AGAGTCGAAGAGAAACTTGATC
1 AGAGTCGAAGAGAAACTCGA-G
*
81245 A-AGTCGTAGAGAAACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
* *
81265 AGAGTCGAAGATACACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
81286 AG
1 AG
81288 GAATAAGGGG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.40, C:0.15, G:0.29, T:0.15
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTCGAG
Found at i:81363 original size:33 final size:33
Alignment explanation
Indices: 81321--81386 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
81311 AAATAGATGG
*
81321 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
81354 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
81387 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:83196 original size:18 final size:17
Alignment explanation
Indices: 83172--83219 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 17
83162 AAATGTCGAG
83172 TTAATTTTGTATAAGAT
1 TTAATTTTGTATAAGAT
*
83189 TATAATTTTGTATACGAT
1 T-TAATTTTGTATAAGAT
83207 TTATATTTTGTAT
1 TTA-ATTTTGTAT
83220 GTGAATATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 3 0.11
18 25 0.89
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.56
Consensus pattern (17 bp):
TTAATTTTGTATAAGAT
Found at i:83705 original size:197 final size:198
Alignment explanation
Indices: 83338--85094 Score: 3368
Period size: 197 Copynumber: 8.9 Consensus size: 198
83328 CAATATGGCC
* *
83338 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCAATCCCAAAATCATCGAAC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAAC
83403 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
83468 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAA
83533 TGGAA
195 TGG-A
*
83538 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCCAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
83602 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACC-GTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
83666 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
83731 GGA
196 GGA
83734 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
83799 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACC-GTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
83863 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
83928 GGA
196 GGA
83931 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCC-AAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
83995 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTACACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
84060 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
84125 GGA
196 GGA
84128 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
84193 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
84258 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
84323 GGA
196 GGA
84326 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
84391 CAAAAGTATAATGT-ATATGTAATTTTTCAATCTAACCGGTACAATTACACCGG-TTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
84454 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
84519 GGA
196 GGA
84522 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
84586 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
84651 AATATGTCTAAATAATGTGTCGACATTAATATAGTTTGTGTCGATAC-TTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
84715 GGA
196 GGA
84718 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
84783 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
84848 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
84913 GGAA
196 GG-A
*
84917 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCCAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
84982 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
85047 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACT
85095 AATTTAATAT
Statistics
Matches: 1538, Mismatches: 11, Indels: 17
0.98 0.01 0.01
Matches are distributed among these distances:
195 43 0.03
196 293 0.19
197 682 0.44
198 308 0.20
199 178 0.12
200 34 0.02
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (198 bp):
AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
GGA
Found at i:86531 original size:3 final size:3
Alignment explanation
Indices: 86523--86594 Score: 72
Period size: 3 Copynumber: 24.0 Consensus size: 3
86513 TCTTTTAACA
* * * ** * *
86523 GAT GAT GAT GAT GAC GAT GAA GCT GGC GAT GAA GAT GAT GAC GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
*
86571 GAT GAT GAT GAT GAA GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT
86595 CCAAACAAGT
Statistics
Matches: 54, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.35, C:0.06, G:0.35, T:0.25
Consensus pattern (3 bp):
GAT
Found at i:88178 original size:182 final size:182
Alignment explanation
Indices: 87787--88437 Score: 1130
Period size: 182 Copynumber: 3.6 Consensus size: 182
87777 CAAAGTTTTC
* * * *
87787 ACACTTTTTAATATTGTGTCTGTACTTTATGTCCAGAATGAAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
* *
87852 AAAAAAGTGTCG--ATTGAAAAAACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAA
66 AAAAAAGTGTCGACATT---TACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAA
*
87915 TATAACCGGTAT-AATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
128 TATAACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCT-TATCG
87970 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
*
88035 AAAAAAGTGTCGACATTTACACATCGGAACCCATATTTATAATGTAATAGATAATTTTGTAATAT
66 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
88100 AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTATCG
131 AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTATCG
* *
88152 ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTAGAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
88217 -AAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
66 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
88281 AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTTATCG
131 AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACC-TTATCG
*
88334 ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
88399 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTA
66 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTA
88438 AGGTTATCTT
Statistics
Matches: 451, Mismatches: 12, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
181 109 0.24
182 192 0.43
183 147 0.33
185 3 0.01
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (182 bp):
ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTCTACAACCTTATCG
Found at i:89696 original size:23 final size:23
Alignment explanation
Indices: 89665--89727 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
89655 ATAGGTAAAC
*
89665 ATATGATGTAATAGGTACCCCTT
1 ATATAATGTAATAGGTACCCCTT
* **
89688 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTACCCCTT
89711 ATATAATGTAATAGGTA
1 ATATAATGTAATAGGTA
89728 GTGGTTATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTACCCCTT
Found at i:89735 original size:23 final size:23
Alignment explanation
Indices: 89665--89737 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
89655 ATAGGTAAAC
* * **
89665 ATATGATGTAATAGGTACCCCTT
1 ATATAATGTAATAGGTATCGGTT
*
89688 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTATCGGTT
89711 ATATAATGTAATAGGTAGT-GGTT
1 ATATAATGTAATAGGTA-TCGGTT
89734 ATAT
1 ATAT
89738 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 43 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.07, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCGGTT
Found at i:90078 original size:22 final size:22
Alignment explanation
Indices: 90033--90078 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
90023 ATTACATAAG
*
90033 TTTTAAAAAAAGTATCGATCCT
1 TTTTAAAAAAAGTATCGAACCT
*
90055 TTTTATAAAAAGTAT-GAACACT
1 TTTTAAAAAAAGTATCGAAC-CT
90077 TT
1 TT
90079 CAATATAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.14
22 18 0.86
ACGTcount: A:0.41, C:0.11, G:0.09, T:0.39
Consensus pattern (22 bp):
TTTTAAAAAAAGTATCGAACCT
Found at i:90127 original size:23 final size:23
Alignment explanation
Indices: 90096--90158 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
90086 ATAGGTAAAC
*
90096 ATATGATGTAATAGGTACCCCTT
1 ATATAATGTAATAGGTACCCCTT
* **
90119 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTACCCCTT
90142 ATATAATGTAATAGGTA
1 ATATAATGTAATAGGTA
90159 GTGGTTATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTACCCCTT
Found at i:90166 original size:23 final size:23
Alignment explanation
Indices: 90096--90168 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
90086 ATAGGTAAAC
* * **
90096 ATATGATGTAATAGGTACCCCTT
1 ATATAATGTAATAGGTATCGGTT
*
90119 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTATCGGTT
90142 ATATAATGTAATAGGTAGT-GGTT
1 ATATAATGTAATAGGTA-TCGGTT
90165 ATAT
1 ATAT
90169 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 43 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.07, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTATCGGTT
Found at i:90470 original size:25 final size:25
Alignment explanation
Indices: 90436--90486 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
90426 ACAACAAATC
*
90436 AATTAAACATTGTTGTGGGTACATT
1 AATTAAACATTGTTATGGGTACATT
*
90461 AATTGAACATTGTTATGGGTACATT
1 AATTAAACATTGTTATGGGTACATT
90486 A
1 A
90487 TTTGGATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (25 bp):
AATTAAACATTGTTATGGGTACATT
Found at i:90756 original size:18 final size:18
Alignment explanation
Indices: 90735--90771 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
90725 GTAATTGGAG
90735 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
90753 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
90771 T
1 T
90772 ATATTTCGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:91071 original size:39 final size:39
Alignment explanation
Indices: 91028--91153 Score: 234
Period size: 39 Copynumber: 3.2 Consensus size: 39
91018 TCCGATGCTC
* *
91028 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
91067 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
91106 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
91145 ATCAAAATC
1 ATCAAAATC
91154 TACAACTTGA
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 85 1.00
ACGTcount: A:0.48, C:0.21, G:0.13, T:0.17
Consensus pattern (39 bp):
ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
Found at i:91586 original size:23 final size:23
Alignment explanation
Indices: 91555--91618 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
91545 ATAGGTAAAC
*
91555 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
91578 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
91601 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
91619 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:91625 original size:23 final size:23
Alignment explanation
Indices: 91555--91627 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
91545 ATAGGTAAAC
* **
91555 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
91578 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
91601 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
91624 ATAT
1 ATAT
91628 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:94234 original size:2 final size:2
Alignment explanation
Indices: 94227--94255 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
94217 TCTTTTTAAA
94227 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
94256 CCCCCATCCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:94502 original size:24 final size:22
Alignment explanation
Indices: 94468--94559 Score: 85
Period size: 24 Copynumber: 3.9 Consensus size: 22
94458 ACATAATTCA
94468 AGTCAAGTATCATATCAGAATCC
1 AGTCAA-TATCATATCAGAATCC
* * *
94491 AGATTATTTATCAGATCAGAATCC
1 AG-TCA-ATATCATATCAGAATCC
94515 ATGTCAATATCATATCAGAATCC
1 A-GTCAATATCATATCAGAATCC
* *
94538 AGGTCAGGTATCATAACAGAAT
1 A-GTCA-ATATCATATCAGAAT
94560 TCAAATTTGA
Statistics
Matches: 56, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
23 22 0.39
24 33 0.59
25 1 0.02
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.28
Consensus pattern (22 bp):
AGTCAATATCATATCAGAATCC
Found at i:94550 original size:47 final size:48
Alignment explanation
Indices: 94469--94559 Score: 121
Period size: 47 Copynumber: 1.9 Consensus size: 48
94459 CATAATTCAA
* ** *
94469 GTCAAGTATCATATCAGAATCCAGATTATTTATCAGATCAGAATCCAT
1 GTCAAGTATCATATCAGAATCCAGATCAGGTATCAGAACAGAATCCAT
* *
94517 GTCAA-TATCATATCAGAATCCAGGTCAGGTATCATAACAGAAT
1 GTCAAGTATCATATCAGAATCCAGATCAGGTATCAGAACAGAAT
94560 TCAAATTTGA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
47 32 0.86
48 5 0.14
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (48 bp):
GTCAAGTATCATATCAGAATCCAGATCAGGTATCAGAACAGAATCCAT
Found at i:97985 original size:3 final size:3
Alignment explanation
Indices: 97977--98015 Score: 51
Period size: 3 Copynumber: 12.7 Consensus size: 3
97967 TATTAATACT
* *
97977 TTA TTA TTA TTA TTAA TTA TTA TTT TTA TTA ATA TTA TT
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TT
98016 TAATTACATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:97997 original size:13 final size:13
Alignment explanation
Indices: 97979--98021 Score: 52
Period size: 12 Copynumber: 3.3 Consensus size: 13
97969 TTAATACTTT
97979 ATTATTATTATTA
1 ATTATTATTATTA
*
97992 ATTATTATT-TTT
1 ATTATTATTATTA
*
98004 ATTAATATTATTTA
1 ATTATTATTA-TTA
98018 ATTA
1 ATTA
98022 CATTATGTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
12 10 0.40
13 9 0.36
14 6 0.24
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
ATTATTATTATTA
Found at i:97998 original size:16 final size:16
Alignment explanation
Indices: 97977--98015 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
97967 TATTAATACT
97977 TTATTATTATTATTAA
1 TTATTATTATTATTAA
*
97993 TTATTATTTTTATTAA
1 TTATTATTATTATTAA
98009 -TATTATT
1 TTATTATT
98016 TAATTACATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 7 0.32
16 15 0.68
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TTATTATTATTATTAA
Found at i:108367 original size:21 final size:21
Alignment explanation
Indices: 108343--108382 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
108333 TAAATTTATT
*
108343 AAATTGAATTAAA-ATATAATC
1 AAATT-AATAAAACATATAATC
108364 AAATTAATAAAACATATAA
1 AAATTAATAAAACATATAA
108383 ATACTAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (21 bp):
AAATTAATAAAACATATAATC
Found at i:108512 original size:31 final size:31
Alignment explanation
Indices: 108454--108512 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
108444 TATTAACAAC
*
108454 AAGTGATTTATTTGACTACAATTAAATAACT
1 AAGTGATTTATTTGACTAAAATTAAATAACT
108485 AAGTGATTT-TATTGA-TAAAATTGAAATA
1 AAGTGATTTAT-TTGACTAAAATT-AAATA
108513 TTGATGATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 7 0.28
31 18 0.72
ACGTcount: A:0.44, C:0.05, G:0.12, T:0.39
Consensus pattern (31 bp):
AAGTGATTTATTTGACTAAAATTAAATAACT
Found at i:114138 original size:22 final size:22
Alignment explanation
Indices: 114113--114157 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
114103 CAATTTGAAG
114113 TGTTTCGAGCAAAGGTTTGTGT
1 TGTTTCGAGCAAAGGTTTGTGT
114135 TGTTTCGAGCAAAGGTTTGTGT
1 TGTTTCGAGCAAAGGTTTGTGT
114157 T
1 T
114158 CAATCGTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.18, C:0.09, G:0.31, T:0.42
Consensus pattern (22 bp):
TGTTTCGAGCAAAGGTTTGTGT
Found at i:121238 original size:21 final size:21
Alignment explanation
Indices: 121212--121294 Score: 125
Period size: 21 Copynumber: 4.0 Consensus size: 21
121202 CCGTTAGACA
*
121212 GGGGGGAATCGGTACCCCCTG
1 GGGGGGAATCTGTACCCCCTG
*
121233 GGGGGGAATCTGTTCCCCCTG
1 GGGGGGAATCTGTACCCCCTG
121254 GGGGGGAATCTGTA-CCCCT-
1 GGGGGGAATCTGTACCCCCTG
*
121273 GGGGGGAATATGTACCCCCTG
1 GGGGGGAATCTGTACCCCCTG
121294 G
1 G
121295 ACAATCTGAT
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
19 13 0.23
20 10 0.18
21 33 0.59
ACGTcount: A:0.14, C:0.27, G:0.40, T:0.19
Consensus pattern (21 bp):
GGGGGGAATCTGTACCCCCTG
Found at i:124035 original size:68 final size:66
Alignment explanation
Indices: 123948--124117 Score: 227
Period size: 67 Copynumber: 2.5 Consensus size: 66
123938 CTTGGAGCGT
*
123948 GGGGGGAATTGGTACCCCCTCAT-AGGGAATCGGTTCCCTAATTACAATCTGATTTCGACCGTTA
1 GGGGGGAATCGGTA-CCCCT--TGAGGGAATCGGTTCCCTAATTACAATCTGATTTCGACCGTTA
124012 GACA
63 GACA
* *
124016 GGGGGGAATCGGTATCCCCTTGGGGGAATCTGTTCCCTAATTACAATCTGATTTCGACCGTTAGA
1 GGGGGGAATCGGTA-CCCCTTGAGGGAATCGGTTCCCTAATTACAATCTGATTTCGACCGTTAGA
124081 CA
65 CA
* * * *
124083 -GGGGAAATCGGTACCCCTGGGGGGAATCTGTTCCC
1 GGGGGGAATCGGTACCCCTTGAGGGAATCGGTTCCC
124118 CCTGGGGGGG
Statistics
Matches: 95, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
65 21 0.22
66 13 0.14
67 43 0.45
68 18 0.19
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (66 bp):
GGGGGGAATCGGTACCCCTTGAGGGAATCGGTTCCCTAATTACAATCTGATTTCGACCGTTAGAC
A
Found at i:124051 original size:67 final size:65
Alignment explanation
Indices: 123972--124117 Score: 247
Period size: 67 Copynumber: 2.2 Consensus size: 65
123962 CCCCCTCATA
* * *
123972 GGGAATCGGTTCCCTAATTACAATCTGATTTCGACCGTTAGACAGGGGGGAATCGGTATCCCCTT
1 GGGAATCTGTTCCCTAATTACAATCTGATTTCGACCGTTAGACA-GGGGAAATCGGTA-CCCCTG
124037 GG
64 GG
124039 GGGAATCTGTTCCCTAATTACAATCTGATTTCGACCGTTAGACAGGGGAAATCGGTACCCCTGGG
1 GGGAATCTGTTCCCTAATTACAATCTGATTTCGACCGTTAGACAGGGGAAATCGGTACCCCTGGG
124104 GGGAATCTGTTCCC
1 GGGAATCTGTTCCC
124118 CCTGGGGGGG
Statistics
Matches: 76, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
65 21 0.28
66 12 0.16
67 43 0.57
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (65 bp):
GGGAATCTGTTCCCTAATTACAATCTGATTTCGACCGTTAGACAGGGGAAATCGGTACCCCTGGG
Found at i:124127 original size:21 final size:21
Alignment explanation
Indices: 124083--124159 Score: 97
Period size: 20 Copynumber: 3.8 Consensus size: 21
124073 CCGTTAGACA
* *
124083 GGGGAAATCGGTA-CCCCT-G
1 GGGGGAATCTGTACCCCCTGG
*
124102 GGGGGAATCTGTTCCCCCTGG
1 GGGGGAATCTGTACCCCCTGG
124123 GGGGGAATCTGTACCCCCT-G
1 GGGGGAATCTGTACCCCCTGG
*
124143 GGGGGAATTTGTACCCC
1 GGGGGAATCTGTACCCC
124160 TGGACAATCT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
19 10 0.20
20 22 0.43
21 19 0.37
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (21 bp):
GGGGGAATCTGTACCCCCTGG
Found at i:124976 original size:57 final size:57
Alignment explanation
Indices: 124870--124983 Score: 142
Period size: 57 Copynumber: 2.0 Consensus size: 57
124860 ATATCTATTG
* * * * *
124870 AATAGTACTTTAGTACTTAAATTGTATTTTATTGAGTCCTACAATTATTAAAAGTTA
1 AATAATACTTTAATACTTAAATTATATTTTATTAAGTCCTACAACTATTAAAAGTTA
*
124927 AATAATACTTTAATA-TATAAATTATATTTTATTAAGT-CTCATAACTATTAAAAGTTA
1 AATAATACTTTAATACT-TAAATTATATTTTATTAAGTCCT-ACAACTATTAAAAGTTA
124984 TAAAATGGTC
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
56 3 0.06
57 46 0.94
ACGTcount: A:0.41, C:0.08, G:0.07, T:0.44
Consensus pattern (57 bp):
AATAATACTTTAATACTTAAATTATATTTTATTAAGTCCTACAACTATTAAAAGTTA
Found at i:130292 original size:113 final size:113
Alignment explanation
Indices: 129984--130555 Score: 944
Period size: 113 Copynumber: 5.1 Consensus size: 113
129974 CTTGTCGGTT
* * *
129984 GTGTCGATACTTTAT-AAAATATATTGATCCATAACAATATAACAAGT-AAAAAAATGACAAAA-
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAAATGACAAAAC
130046 C-GTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATA-TGAAA
66 CGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
* *
130092 GTGTCGATACTTT-TAAAAATGTATCTATCCATAACAATATAGCAGGT-AAAAAAATGACAAAAC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAAATGACAAAAC
* *
130155 CGGTTTATAAAGGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
66 CGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
130203 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAAATGACAAAAC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAAATGACAAAAC
130268 CGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATA-TGAAA
66 CGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
*
130315 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAAATGATAAAAC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAAATGACAAAAC
* * * *
130380 CGGTCTATAAATGACAAAACAAGTAAAGCGCTATCGGATATGTTGATA
66 CGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
* *
130428 GTGTCAATACTTTATAAAAATGTATCGATCCATAACAATAAAACAGGTAAAAAAAATGACAAAAC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAAATGACAAAAC
* *
130493 CGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGATA
66 CGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
130541 GTGTCGATACTTTAT
1 GTGTCGATACTTTAT
130556 TATAAGTATC
Statistics
Matches: 435, Mismatches: 22, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
107 1 0.00
108 55 0.13
109 1 0.00
110 38 0.09
111 18 0.04
112 140 0.32
113 182 0.42
ACGTcount: A:0.45, C:0.14, G:0.16, T:0.24
Consensus pattern (113 bp):
GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAAATGACAAAAC
CGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
Found at i:130567 original size:225 final size:224
Alignment explanation
Indices: 129984--130555 Score: 947
Period size: 225 Copynumber: 2.6 Consensus size: 224
129974 CTTGTCGGTT
* * *
129984 GTGTCGATACTTTAT-AAAATATATTGATCCATAACAATATAACAAGT-AAAAAAATGACAAAA-
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAAATGACAAAAC
130046 C-GTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATGAAAGTGTCGATACTTT-TAAA
66 CGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATGAAAGTGTCGATACTTTATAAA
* * *
130109 AATGTATCTATCCATAACAATATAGCAGGTAAAAAAATGACAAAACCGGTTTATAAAGGACAAAA
131 AATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACCGGTCTATAAAGGACAAAA
*
130174 CAGGTAAAGCGCTACCGGATATATTGAAA
196 CAAGTAAAGCGCTACCGGATATATTGAAA
130203 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAAATGACAAAAC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAAATGACAAAAC
130268 CGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATGAAAGTGTCGATACTTTATAAA
66 CGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATGAAAGTGTCGATACTTTATAAA
* *
130333 AATGTATCGATCCATAACAATATAACAGGTAAAAAAAATGATAAAACCGGTCTATAAATGACAAA
131 AATGTATCGATCCATAACAATATAACAGGT-AAAAAAATGACAAAACCGGTCTATAAAGGACAAA
* * *
130398 ACAAGTAAAGCGCTATCGGATATGTTGATA
195 ACAAGTAAAGCGCTACCGGATATATTGAAA
* *
130428 GTGTCAATACTTTATAAAAATGTATCGATCCATAACAATAAAACAGGTAAAAAAAATGACAAAAC
1 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAAATGACAAAAC
* *
130493 CGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGATAGTGTCGATACTTTAT
66 CGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATAT-ATGAAAGTGTCGATACTTTAT
130556 TATAAGTATC
Statistics
Matches: 330, Mismatches: 16, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
219 15 0.05
220 29 0.09
221 15 0.05
222 1 0.00
223 58 0.18
224 32 0.10
225 161 0.49
226 19 0.06
ACGTcount: A:0.45, C:0.14, G:0.16, T:0.24
Consensus pattern (224 bp):
GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAAATGACAAAAC
CGGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATGAAAGTGTCGATACTTTATAAA
AATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACCGGTCTATAAAGGACAAAA
CAAGTAAAGCGCTACCGGATATATTGAAA
Found at i:131434 original size:21 final size:21
Alignment explanation
Indices: 131408--131447 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
131398 ATAAATGTGT
131408 ATCGATGCACT-GCTACAGTGC
1 ATCGATGCA-TAGCTACAGTGC
131429 ATCGATGCATAGCTACAGT
1 ATCGATGCATAGCTACAGT
131448 ACTGCTACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (21 bp):
ATCGATGCATAGCTACAGTGC
Found at i:131456 original size:11 final size:11
Alignment explanation
Indices: 131440--131481 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
131430 TCGATGCATA
131440 GCTACAGTACT
1 GCTACAGTACT
* *
131451 GCTACAATAAT
1 GCTACAGTACT
131462 GCTACAGTACT
1 GCTACAGTACT
*
131473 ACTACAGTA
1 GCTACAGTA
131482 TTTCCAGCAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (11 bp):
GCTACAGTACT
Found at i:131753 original size:2 final size:2
Alignment explanation
Indices: 131746--131780 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
131736 TTTAATTCCA
*
131746 AT AT AT AT AT AT AT AT AT AT AT AT AT AT CT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
131781 CCCATATTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:132021 original size:58 final size:58
Alignment explanation
Indices: 131941--132050 Score: 166
Period size: 58 Copynumber: 1.9 Consensus size: 58
131931 TCCTTTTTCG
* * * *
131941 TTTTAGCACACAAAGTGTCCTATCCGAAAATTCATACCATTAGTATGATTTTGTTACA
1 TTTTAGCACACAAAATGCCCTATCCGAAAATCCATACCATTAATATGATTTTGTTACA
* *
131999 TTTTAGCACATAAAATGCCCTATGCGAAAATCCATACCATTAATATGATTTT
1 TTTTAGCACACAAAATGCCCTATCCGAAAATCCATACCATTAATATGATTTT
132051 CTTATCCTTG
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
58 46 1.00
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (58 bp):
TTTTAGCACACAAAATGCCCTATCCGAAAATCCATACCATTAATATGATTTTGTTACA
Found at i:132133 original size:114 final size:115
Alignment explanation
Indices: 131982--132339 Score: 414
Period size: 114 Copynumber: 3.1 Consensus size: 115
131972 TCATACCATT
** * ***
131982 AGTATGATTTTGTTA-CATTTTAGCACATAAAATGCCCTATGCGAAAATCCATACCATTAATATG
1 AGTATGATTTCCTTACCATTTTAGCACATAACATGCCCTATG-G-AAATCCATATTTTTAATATG
* *
132046 ATTTTCTTATCCTTGAAGCACCCTTAGTGCTTTATCT-GAAATCCA-ACA-TC
64 ATTTCCTTATCCTTGAAGCA-CCTGAGTGCTTTATCTGGAAATCCATACACTC
132096 AGTATGA-TTCCTTACCATTTTAGCACATAACATGCCCTATAGGGAAATCCATATTTTTAATATG
1 AGTATGATTTCCTTACCATTTTAGCACATAACATGCCCTAT--GGAAATCCATATTTTTAATATG
* *
132160 ATTTCCTTAT-CTTGTAGCACCTGAGTGCTTTATTTGGAAATCCATACACTC
64 ATTTCCTTATCCTTGAAGCACCTGAGTGCTTTATCTGGAAATCCATACACTC
132211 AGTATGATTTCCTTACCATTTTAGCACATAACATGCCCTTATGGAAAT-CATATTTTTAATATGA
1 AGTATGATTTCCTTACCATTTTAGCACATAACATGCCC-TATGGAAATCCATATTTTTAATATGA
* * * * *
132275 TTTCCTTATCATT-TAGCACACTAAGTGCTCCTA--TGGAAATCTATACACTC
65 TTTCCTTATCCTTGAAGCAC-CTGAGTGCT-TTATCTGGAAATCCATACACTC
*
132325 AATAT-AGTTTCCTTA
1 AGTATGA-TTTCCTTA
132340 TTGTTTTAGC
Statistics
Matches: 217, Mismatches: 15, Indels: 24
0.85 0.06 0.09
Matches are distributed among these distances:
112 14 0.06
113 22 0.10
114 119 0.55
115 26 0.12
116 33 0.15
117 3 0.01
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.37
Consensus pattern (115 bp):
AGTATGATTTCCTTACCATTTTAGCACATAACATGCCCTATGGAAATCCATATTTTTAATATGAT
TTCCTTATCCTTGAAGCACCTGAGTGCTTTATCTGGAAATCCATACACTC
Found at i:132217 original size:57 final size:56
Alignment explanation
Indices: 132026--132340 Score: 151
Period size: 57 Copynumber: 5.5 Consensus size: 56
132016 CCCTATGCGA
* * * * * *
132026 AAATCCATACCATTAATATGATTTTCTTATCCTTGAAGCACCCTTAGTGCTTTATCT-G
1 AAATCCATA-CATCAGTATGATTTCCTTAT-CTTGTAGCA-CCTAAGTGCTTTATATGG
* * * * ** *
132084 AAATCCA-ACATCAGTATGA-TTCCTTACCATTTTAGCACATAACATGCCCTATAGGG
1 AAATCCATACATCAGTATGATTTCCTTATC-TTGTAGCACCTAA-GTGCTTTATATGG
** * * * *
132140 AAATCCATATTTTTAATATGATTTCCTTATCTTGTAGCACCTGAGTGCTTTATTTGG
1 AAATCCATA-CATCAGTATGATTTCCTTATCTTGTAGCACCTAAGTGCTTTATATGG
* * * * **
132197 AAATCCATACACTCAGTATGATTTCCTTACCATTTTAGCACATAACATGCCCT-TATGG
1 AAATCCATACA-TCAGTATGATTTCCTTATC-TTGTAGCACCTAA-GTGCTTTATATGG
** * * **
132255 AAAT-CATATTTTTAATATGATTTCCTTATCATT-TAGCACACTAAGTGC-TCCTATGG
1 AAATCCATA-CATCAGTATGATTTCCTTATC-TTGTAGCAC-CTAAGTGCTTTATATGG
* *
132311 AAATCTATACACTCAATAT-AGTTTCCTTAT
1 AAATCCATACA-TCAGTATGA-TTTCCTTAT
132341 TGTTTTAGCA
Statistics
Matches: 191, Mismatches: 51, Indels: 31
0.70 0.19 0.11
Matches are distributed among these distances:
54 4 0.02
55 18 0.09
56 36 0.19
57 79 0.41
58 42 0.22
59 12 0.06
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.38
Consensus pattern (56 bp):
AAATCCATACATCAGTATGATTTCCTTATCTTGTAGCACCTAAGTGCTTTATATGG
Found at i:132578 original size:62 final size:60
Alignment explanation
Indices: 132509--132668 Score: 160
Period size: 62 Copynumber: 2.6 Consensus size: 60
132499 TTCTCTCACA
*
132509 GATGCATCGGTGCACAACCTATGCATCGATGCATATATTACATTCGATGTTTCATCTTA-AGG
1 GATGCATCGGTGCACAACCTATGCATCGATGCATA-ACTACATTCGATGTTT-AT-TTATAGG
* * * * * *
132571 GATGCATCGATGCACTACCTGTGCATCGATACACTAACTACCTTCGATGTTTATTTATTTATG
1 GATGCATCGGTGCACAACCTATGCATCGATGCA-TAACTACATTCGATGTTTATTTA--TAGG
* * *
132634 TATGCATCGGTGCACTCACTTATGCATCGATGCAT
1 GATGCATCGGTGCAC-AACCTATGCATCGATGCAT
132669 CTTTCCCAGA
Statistics
Matches: 80, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
60 3 0.04
61 2 0.03
62 43 0.54
63 18 0.22
64 14 0.17
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.34
Consensus pattern (60 bp):
GATGCATCGGTGCACAACCTATGCATCGATGCATAACTACATTCGATGTTTATTTATAGG
Found at i:138373 original size:20 final size:21
Alignment explanation
Indices: 138348--138390 Score: 79
Period size: 20 Copynumber: 2.1 Consensus size: 21
138338 AATATTAAAT
138348 GTGTATCGATGCAT-GCTACA
1 GTGTATCGATGCATAGCTACA
138368 GTGTATCGATGCATAGCTACA
1 GTGTATCGATGCATAGCTACA
138389 GT
1 GT
138391 ACTGCTACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (21 bp):
GTGTATCGATGCATAGCTACA
Found at i:138399 original size:11 final size:11
Alignment explanation
Indices: 138383--138424 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
138373 TCGATGCATA
138383 GCTACAGTACT
1 GCTACAGTACT
* *
138394 GCTACAATAAT
1 GCTACAGTACT
138405 GCTACAGTACT
1 GCTACAGTACT
*
138416 ACTACAGTA
1 GCTACAGTA
138425 TTTCTAGCAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (11 bp):
GCTACAGTACT
Found at i:139126 original size:114 final size:115
Alignment explanation
Indices: 138909--139268 Score: 419
Period size: 115 Copynumber: 3.1 Consensus size: 115
138899 TCATACCATT
** * * ** *
138909 AGTATGATTTTGTTACCATTTTAGAACATAAAATG-CCTAT-GCGAAAATCCATACCATTAGTAT
1 AGTATGATTTCCTTACCATTTTAG-ACATAACATGCCCTATAG-GGAAATCCATA-TTTTAATAT
* * * *
138972 GATTT-CTTATCCTTGAAGCACCCTTAGTGCTTTATCTGGAAATCCATACACTC
63 GATTTCCTTAT-CATGTAGCACCCTAAGTGCTTTATATGGAAATCCATACACTC
139025 AGTATGATTTCCTTACCATTTTAG-CATAACATGCCCTATAGGGAAATCCATATTTTTAATATGA
1 AGTATGATTTCCTTACCATTTTAGACATAACATGCCCTATAGGGAAATCCATA-TTTTAATATGA
* *
139089 TTTCCTTATC-TGTAGCACCCTGAGTGCTTTATTTGGAAATCCATACACTC
65 TTTCCTTATCATGTAGCACCCTAAGTGCTTTATATGGAAATCCATACACTC
*
139139 AGTATGATTTCCTTACCA-TTTAGCACATAACATGCCCTATATGGAAATCCATATTTTAATATGA
1 AGTATGATTTCCTTACCATTTTAG-ACATAACATGCCCTATAGGGAAATCCATATTTTAATATGA
* * *** **
139203 TTTCCTTATCATTTAGCACACTAAGTGCTCCCTATGGAAATATATACACTC
65 TTTCCTTATCATGTAGCACCCTAAGTGCTTTATATGGAAATCCATACACTC
139254 AGTAT-AGTTTCCTTA
1 AGTATGA-TTTCCTTA
139269 TTGTTTTAGC
Statistics
Matches: 216, Mismatches: 21, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
113 5 0.02
114 85 0.39
115 98 0.45
116 28 0.13
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (115 bp):
AGTATGATTTCCTTACCATTTTAGACATAACATGCCCTATAGGGAAATCCATATTTTAATATGAT
TTCCTTATCATGTAGCACCCTAAGTGCTTTATATGGAAATCCATACACTC
Found at i:139221 original size:57 final size:58
Alignment explanation
Indices: 139008--139222 Score: 206
Period size: 57 Copynumber: 3.8 Consensus size: 58
138998 GTGCTTTATC
** * *
139008 TGGAAATCCATACACTCAGTATGATTTCCTTACCATTTTAG--CATAACATGCCCTATA
1 TGGAAATCCATACTTTTAATATGATTTCCTTACCA-TTTAGCACATAACATGCCCTATA
* * * * * * * ** *
139065 GGGAAATCCATATTTTTAATATGATTTCCTTATC-TGTAGCACCCTGA-GTGCTTTATT
1 TGGAAATCCATACTTTTAATATGATTTCCTTACCATTTAGCA-CATAACATGCCCTATA
** * *
139122 TGGAAATCCATACACTCAGTATGATTTCCTTACCATTTAGCACATAACATGCCCTATA
1 TGGAAATCCATACTTTTAATATGATTTCCTTACCATTTAGCACATAACATGCCCTATA
*
139180 TGGAAATCCATA-TTTTAATATGATTTCCTTATCATTTAGCACA
1 TGGAAATCCATACTTTTAATATGATTTCCTTACCATTTAGCACA
139223 CTAAGTGCTC
Statistics
Matches: 120, Mismatches: 33, Indels: 10
0.74 0.20 0.06
Matches are distributed among these distances:
55 4 0.03
57 89 0.74
58 27 0.22
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (58 bp):
TGGAAATCCATACTTTTAATATGATTTCCTTACCATTTAGCACATAACATGCCCTATA
Found at i:139239 original size:57 final size:58
Alignment explanation
Indices: 138953--139243 Score: 186
Period size: 57 Copynumber: 5.1 Consensus size: 58
138943 GCCTATGCGA
** * * * * * ** *
138953 AAATCCATACCATTAGTATGATTT-CTTATCCTTGAAGCACCCTTAGTGCTTTATCTGG
1 AAATCCATACTTTTAATATGATTTCCTTATCATT-TAGCACACTAAGTGCTCCATATGG
** * * * * *
139011 AAATCCATACACTCAGTATGATTTCCTTACCATTTTAG--CA-TAACATGC-CCTATAGGG
1 AAATCCATACTTTTAATATGATTTCCTTATCA-TTTAGCACACTAA-GTGCTCC-ATATGG
* * * * ** *
139068 AAATCCATATTTTTAATATGATTTCCTTATC-TGTAGCACCCTGAGTGCTTTATTTGG
1 AAATCCATACTTTTAATATGATTTCCTTATCATTTAGCACACTAAGTGCTCCATATGG
** * * * *
139125 AAATCCATACACTCAGTATGATTTCCTTACCATTTAGCACA-TAACATGC-CCTATATGG
1 AAATCCATACTTTTAATATGATTTCCTTATCATTTAGCACACTAA-GTGCTCC-ATATGG
*
139183 AAATCCATA-TTTTAATATGATTTCCTTATCATTTAGCACACTAAGTGCTCCCTATGG
1 AAATCCATACTTTTAATATGATTTCCTTATCATTTAGCACACTAAGTGCTCCATATGG
139240 AAAT
1 AAAT
139244 ATATACACTC
Statistics
Matches: 173, Mismatches: 47, Indels: 27
0.70 0.19 0.11
Matches are distributed among these distances:
55 4 0.02
56 2 0.01
57 106 0.61
58 52 0.30
59 7 0.04
60 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.12, T:0.36
Consensus pattern (58 bp):
AAATCCATACTTTTAATATGATTTCCTTATCATTTAGCACACTAAGTGCTCCATATGG
Found at i:141946 original size:14 final size:13
Alignment explanation
Indices: 141922--141956 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
141912 TTATTCAGAT
*
141922 TTTTATTTTTTTA
1 TTTTATTTTTTAA
141935 TTTTATTATTTTAA
1 TTTTATT-TTTTAA
141949 TTTTATTT
1 TTTTATTT
141957 CTTTTTCCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTATTTTTTAA
Found at i:144647 original size:95 final size:95
Alignment explanation
Indices: 144483--144722 Score: 281
Period size: 95 Copynumber: 2.7 Consensus size: 95
144473 TAATATTATA
* * * *
144483 TATACAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAATGCCCCGGTTTTATGGATAAT
1 TATACAATAAAGCTTGAGATGTCCCTCTAGAGCAATTGGTTAAACGCCCCGGCTTTATGGATAAG
* *
144548 ATTCAGCTAGCCTAATAAAGGTGATTATGC
66 ATTCAACTAACCTAATAAAGGTGATTATGC
*
144578 TATACAATAAAGCTTGAGATGTCCCTCTA-AGGCAATTGGTTAAACGCTCCGGCTTTATGGATAA
1 TATACAATAAAGCTTGAGATGTCCCTCTAGA-GCAATTGGTTAAACGCCCCGGCTTTATGGATAA
*
144642 GATTCAACTAACCTGATAAAGGTG----T--
65 GATTCAACTAACCTAATAAAGGTGATTATGC
* **
144667 T-TAC-AT--A--TTGAGTTGTCCCTCTAGAGCAATTGGTTAAATTCCCCGGCTTTATGGAT
1 TATACAATAAAGCTTGAGATGTCCCTCTAGAGCAATTGGTTAAACGCCCCGGCTTTATGGAT
144723 TCGGCTAGCC
Statistics
Matches: 131, Mismatches: 12, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
83 43 0.33
84 1 0.01
85 1 0.01
87 2 0.02
88 3 0.02
89 1 0.01
91 1 0.01
94 1 0.01
95 78 0.60
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33
Consensus pattern (95 bp):
TATACAATAAAGCTTGAGATGTCCCTCTAGAGCAATTGGTTAAACGCCCCGGCTTTATGGATAAG
ATTCAACTAACCTAATAAAGGTGATTATGC
Found at i:146025 original size:84 final size:84
Alignment explanation
Indices: 145874--146880 Score: 1073
Period size: 84 Copynumber: 12.1 Consensus size: 84
145864 CAAGGTTAGG
* * * *
145874 AGGGTTATCTGCCAA-CAAAGATCTTCGAGTTCGACTACACTCAGCTCTAAGGCACATCATTTAC
1 AGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGC
* *
145938 AGCATAGCTTAAGTCGATA
66 AGCATAACTTAAGTCGAGA
* * * *
145957 AGGGTTATCTGCCAACCAAAGACCTTCAAGTTCGATTACGCTCAGCTCCAAGGCATATTATTTGC
1 AGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGC
146022 AGCATAACTTAAGTCGAGA
66 AGCATAACTTAAGTCGAGA
* * * * *
146041 AGGGTTATCTTCCAACCTAAGACCTTCGAGTTCAACTCCGCTCAGCTTCAAGGCACATCATTTGC
1 AGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGC
* *
146106 AGCATAGCTTAAGTTGAGA
66 AGCATAACTTAAGTCGAGA
* * * * * *
146125 AGGGCTATCTG----CCAAAGACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTA
1 AGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTG
* * * *
146186 CAACATAACTCAAGGCTAGA
65 CAGCATAACTTAAGTCGAGA
* * * *
146206 AGGGTTATCTGTC-ACCAAAGACCTTCGAGTTCAACTCCGCTCAACTCCAAGGCACATCATTTGC
1 AGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGC
* *
146270 AGTATAGCTTAAGTCGAGA
66 AGCATAACTTAAGTCGAGA
* * * * * * * *
146289 AGGGCTATCTGCCAACCAAAGACCTTCAACTTCGATTACACTCAGCTTCGAGGGAACATCATTTG
1 AGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTG
* * *
146354 CAGCATAACTCAAGGCTAGA
65 CAGCATAACTTAAGTCGAGA
* * **
146374 AGGGTTGTCTGCCAA-CAAAGACCTTCGAATTCGACTACGCTCAGCTCCAAGAAACATCATTTGC
1 AGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGC
*
146438 AGCATAGCTTAAGTCGAGA
66 AGCATAACTTAAGTCGAGA
* * * * * * *
146457 AGGG-TGTCTG----CCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTA
1 AGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTG
* * *
146517 CAGCATAACTCAAGGCTAGA
65 CAGCATAACTTAAGTCGAGA
** * * * *
146537 AGGGTTATCTG-TGACTAAAAGACCTTCGAGTTCGACTACGCTCAGCTCTAAGGCATAGCATTTG
1 AGGGTTATCTGCCAAC-CAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTG
146601 CAGCATAACTTAAGTCGAGA
65 CAGCATAACTTAAGTCGAGA
*
146621 AGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTACAAGGCACATCATTTGC
1 AGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGC
*
146686 AACATAGA-TTAAGTCGAGA
66 AGCATA-ACTTAAGTCGAGA
* * ** * * *
146705 AGGGTTATCTG----CCAAAGACCCTCGAGTTCGATTACATTCAGCTTCGAGGGCACATCATTTA
1 AGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTG
* * *
146766 CAGCATAACTCAAGGCCAGA
65 CAGCATAACTTAAGTCGAGA
** *
146786 AGGGTTATCTATCAA-CAAAGACCTTCGAGTTCGACTACGTTCAGCTCCAAGGCACTATCATTTG
1 AGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCAC-ATCATTTG
*
146850 CAGC-TGAGCTTAAGTCGAGA
65 CAGCAT-AACTTAAGTCGAGA
146870 AGGGTTATCTG
1 AGGGTTATCTG
146881 TTAAAGACCT
Statistics
Matches: 759, Mismatches: 141, Indels: 47
0.80 0.15 0.05
Matches are distributed among these distances:
79 26 0.03
80 87 0.11
81 81 0.11
82 6 0.01
83 99 0.13
84 388 0.51
85 72 0.09
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (84 bp):
AGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGC
AGCATAACTTAAGTCGAGA
Found at i:146335 original size:248 final size:246
Alignment explanation
Indices: 145874--146900 Score: 1079
Period size: 248 Copynumber: 4.1 Consensus size: 246
145864 CAAGGTTAGG
*
145874 AGGGTTATCTGCCAACAAAGATCTTCGAGTTCGACTACACTCAGCTCTAAGGCACATCATTTACA
1 AGGGTTATCTGCC--CAAAGACCTTCGAGTTCGACTACACTCAGCTC-AAGGCACATCATTTACA
* * * * * *
145939 GCATAGCTTAAGTCGATAAGGGTTATCTGCCAACCAAAGACCTTCAAGTTCGATTACGCTCAGC-
63 ACATAACTTAAGTCGAGAAGGGTTATCTG----CCAAAGACCCTCGAGTTCGATTACACTCAGCT
* * * * * * *
146003 TCCAAGGCATATTATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTTCCAACCTAAGACCTTC
124 TCCAAGGCACATCATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGCCAACCAAAGACCTTC
* * * *
146068 GAGTTCAACTCCGCTCAGCTTC-AAGGCACATCATTTGCAGCATAGCTTAAGTTGAGA
189 GAGTTCGACTACGCTCAGCTTCGAAGGCACATCATTTGCAGCATAACTTAAGTCGAGA
* * *
146125 AGGGCTATCTG-CCAAAGACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAA
1 AGGGTTATCTGCCCAAAGACCTTCGAGTTCGACTACACTCAGC-TC-AAGGCACATCATTTACAA
* * * * * * * * *
146189 CATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCAACTCCGCTCAAC-TC
64 CATAACTTAAGTCGAGAAGGGTTATCTG---CCAAAGACCCTCGAGTTCGATTACACTCAGCTTC
* * * * * * *
146253 CAAGGCACATCATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAACCAAAGACCTTCAA
126 CAAGGCACATCATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGA
* * * * * * * *
146318 CTTCGATTACACTCAGCTTCGAGGGAACATCATTTGCAGCATAACTCAAGGCTAGA
191 GTTCGACTACGCTCAGCTTCGAAGGCACATCATTTGCAGCATAACTTAAGTCGAGA
* * * ** *
146374 AGGGTTGTCTGCCAACAAAGACCTTCGAATTCGACTACGCTCAGCTCCAAGAAACATCATTTGCA
1 AGGGTTATCTGCC--CAAAGACCTTCGAGTTCGACTACACTCAGCT-CAAGGCACATCATTTACA
* * * *
146439 GCATAGCTTAAGTCGAGAAGGG-TGTCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGA
63 ACATAACTTAAGTCGAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTCCA
* * ** *
146503 GGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTG-TGACTAAAAGACCTTCGAG
128 AGGCACATCATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGCCAAC-CAAAGACCTTCGAG
* * *
146567 TTCGACTACGCTCAGC-TCTAAGGCATAGCATTTGCAGCATAACTTAAGTCGAGA
192 TTCGACTACGCTCAGCTTCGAAGGCACATCATTTGCAGCATAACTTAAGTCGAGA
* *
146621 AGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTACAAGGCACATCATTTGC
1 AGGGTTATCTG-C--CCAAAGACCTTCGAGTTCGACTACACTCAGCT-CAAGGCACATCATTTAC
*
146686 AACATAGA-TTAAGTCGAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACATTCAGCTTC
62 AACATA-ACTTAAGTCGAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTC
* * * **
146750 GAGGGCACATCATTTACAGCATAACTCAAGGCCAGAAGGGTTATCTATCAA-CAAAGACCTTCGA
126 CAAGGCACATCATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGA
* * *
146814 GTTCGACTACGTTCAGC-TCCAAGGCACTATCATTTGCAGC-TGAGCTTAAGTCGAGA
191 GTTCGACTACGCTCAGCTTCGAAGGCAC-ATCATTTGCAGCAT-AACTTAAGTCGAGA
**
146870 AGGGTTATCTG-TTAAAGACCTTCGAGTTCGA
1 AGGGTTATCTGCCCAAAGACCTTCGAGTTCGA
146901 TTGTATTTAA
Statistics
Matches: 656, Mismatches: 104, Indels: 38
0.82 0.13 0.05
Matches are distributed among these distances:
245 18 0.03
247 67 0.10
248 297 0.45
249 196 0.30
250 9 0.01
251 41 0.06
252 28 0.04
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (246 bp):
AGGGTTATCTGCCCAAAGACCTTCGAGTTCGACTACACTCAGCTCAAGGCACATCATTTACAACA
TAACTTAAGTCGAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTCCAAGG
CACATCATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCG
ACTACGCTCAGCTTCGAAGGCACATCATTTGCAGCATAACTTAAGTCGAGA
Found at i:146460 original size:332 final size:331
Alignment explanation
Indices: 145854--146719 Score: 1268
Period size: 332 Copynumber: 2.6 Consensus size: 331
145844 AAACTATTGG
* * * * * *
145854 CAACATAACTCAAGGTTAGGAGGGTTATCTGCCAACAAAGATCTTCGAGTTCGACTACACTCAGC
1 CAACATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGC
* *
145919 TCTAAGGCACATCATTTACAGCATAGCTTAAGTCGATAAGGGTTATCTGCCAACCAAAGACCTTC
66 TCTAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTC
* * *
145984 AAGTTCGATTACGCTCAGCTCCAAGGCATATTATTTGCAGCATAACTTAAGTCGAGAAGGGTTAT
131 AAGTTCGATTACGCTCAGCTTCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTAT
* * * * * **
146049 CTTCCAACCTAAGACCTTCGAGTTCAACTCCGCTCAGCTTCAAGGCACATCATTTGCAGCATAGC
196 CTGCCAACCAAAGACCTTCGAATTCAACTACGCTCAGCTCCAAGAAACATCATTTGCAGCATAGC
* *
146114 TTAAGTTGAGAAGGGCTATCTGCCAAAGACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACA
261 TTAAGTCGAGAAGGG-TATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACA
146179 TCATTTA
325 TCATTTA
* * *
146186 CAACATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCAACTCCGCTCAAC
1 CAACATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGC
* * *
146251 TCCAAGGCACATCATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAACCAAAGACCTTC
66 TCTAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTC
* * * * * * * *
146316 AACTTCGATTACACTCAGCTTCGAGGGAACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTG
131 AAGTTCGATTACGCTCAGCTTC-AAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTA
*
146381 TCTGCCAA-CAAAGACCTTCGAATTCGACTACGCTCAGCTCCAAGAAACATCATTTGCAGCATAG
195 TCTGCCAACCAAAGACCTTCGAATTCAACTACGCTCAGCTCCAAGAAACATCATTTGCAGCATAG
*
146445 CTTAAGTCGAGAAGGGTGTCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACA
260 CTTAAGTCGAGAAGGGTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACA
146510 TCATTTA
325 TCATTTA
* * *
146517 CAGCATAACTCAAGGCTAGAAGGGTTATCTGTGACTAAAAGACCTTCGAGTTCGACTACGCTCAG
1 CAACATAACTCAAGGCTAGAAGGGTTATCTGTCAC-CAAAGACCTTCGAGTTCGACTACGCTCAG
* * *
146582 CTCTAAGGCATAGCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTT
65 CTCTAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTT
* * * *
146647 CGAGTTCGACTACGCTCAGCTACAAGGCACATCATTTGCAACATAGA-TTAAGTCGAGAAGGGTT
130 CAAGTTCGATTACGCTCAGCTTCAAGGCACATCATTTGCAGCATA-ACTTAAGTCGAGAAGGGTT
146711 ATCTGCCAA
194 ATCTGCCAA
146720 AGACCCTCGA
Statistics
Matches: 471, Mismatches: 60, Indels: 7
0.88 0.11 0.01
Matches are distributed among these distances:
331 128 0.27
332 302 0.64
333 41 0.09
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.24
Consensus pattern (331 bp):
CAACATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGCTCAGC
TCTAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTC
AAGTTCGATTACGCTCAGCTTCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTAT
CTGCCAACCAAAGACCTTCGAATTCAACTACGCTCAGCTCCAAGAAACATCATTTGCAGCATAGC
TTAAGTCGAGAAGGGTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACAT
CATTTA
Found at i:146996 original size:165 final size:164
Alignment explanation
Indices: 145874--146997 Score: 517
Period size: 168 Copynumber: 6.8 Consensus size: 164
145864 CAAGGTTAGG
* * * * * * *
145874 AGGGTTATCTGCCAACAAAGATCTTCGAGTTCGACTACACTCAGC-TCTAAGGCACATCATTTAC
1 AGGGTTATCTG-C--CAAAGACCCTCGAGTTCGATTACATTCAACTTCAAAGGCAAATCATTTAC
* * * * * * ** * **
145938 AGCATAGCTTAAGTCGATAAGGGTTATCTGCCAACCAAAGACCTTCAAGTTCGATTACGCTCAGC
63 AGCATAACTCAAGGCAAGAAGGGCTATCTATCAA-CAAAGACCTTCAAGTTCGACTACATTCAGC
* * *
146003 TCCAAGGCATATTATTTGCAGCATA-ACTTAAGTCGAGA
127 TCCAAGGCACATCATTTGCAACATAGA-TTAAGTCGAGA
* * * * * ** * * *
146041 AGGGTTATCTTCCAACCTAAGACCTTCGAGTTCAACTCCGCTCAGCTTC-AAGGCACATCATTTG
1 AGGGTTATCTGCC-A---AAGACCCTCGAGTTCGATTACATTCAACTTCAAAGGCAAATCATTTA
* * *** * * * *
146105 CAGCATAGCTTAAGTTGAGAAGGGCTATCT-GC--CAAAGACCTTCGAGTTCGATTACACTCAGC
62 CAGCATAACTCAAGGCAAGAAGGGCTATCTATCAACAAAGACCTTCAAGTTCGACTACATTCAGC
* * * * * *
146167 TTCGAGGGCACATCATTTACAACATA-ACTCAAGGCTAGA
127 -TCCAAGGCACATCATTTGCAACATAGA-TTAAGTCGAGA
* * * * ** * * *
146206 AGGGTTATCTGTCACCAAAGACCTTCGAGTTCAACTCCGCTCAAC-TCCAAGGCACATCATTTGC
1 AGGGTTATCTG---CCAAAGACCCTCGAGTTCGATTACATTCAACTTCAAAGGCAAATCATTTAC
* * * * * ** * * *
146270 AGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAACCAAAGACCTTCAACTTCGATTACACTCAGC
63 AGCATAACTCAAGGCAAGAAGGGCTATCTATCAA-CAAAGACCTTCAAGTTCGACTACATTCAGC
* * * * * * *
146335 TTCGAGGGAACATCATTTGCAGCATA-ACTCAAGGCTAGA
127 -TCCAAGGCACATCATTTGCAACATAGA-TTAAGTCGAGA
* * * * ** * * * *
146374 AGGGTTGTCTGCCAACAAAGACCTTCGAATTCGACTACGCTCAGC-TCCAA-GAAACATCATTTG
1 AGGGTTATCTG-C--CAAAGACCCTCGAGTTCGATTACATTCAACTTCAAAGGCAA-ATCATTTA
* * * * * * * * * *
146437 CAGCATAGCTTAAGTCGAGAAGGG-TGTCT-GC--CAAAGACCCTCGAGTTCGATTACACTCAGC
62 CAGCATAACTCAAGGCAAGAAGGGCTATCTATCAACAAAGACCTTCAAGTTCGACTACATTCAGC
* * * * * * *
146498 TTCGAGGGCACATCATTTACAGCATA-ACTCAAGGCTAGA
127 -TCCAAGGCACATCATTTGCAACATAGA-TTAAGTCGAGA
* * * ** * * * * *
146537 AGGGTTATCTGTGACTAAAAGACCTTCGAGTTCGACTACGCTCAGC-TCTAAGGCATAGCATTTG
1 AGGGTTATC--TG-C-CAAAGACCCTCGAGTTCGATTACATTCAACTTCAAAGGCAAATCATTTA
* * * * ** * **
146601 CAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAG
62 CAGCATAACTCAAGGCAAGAAGGGCTATCTATCAA-CAAAGACCTTCAAGTTCGACTACATTCAG
*
146666 CTACAAGGCACATCATTTGCAACATAGATTAAGTCGAGA
126 CTCCAAGGCACATCATTTGCAACATAGATTAAGTCGAGA
* * * *
146705 AGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACATTCAGCTTCGAGGGCACATCATTTACAGC
1 AGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACATTCAACTTCAAAGGCAAATCATTTACAGC
* * * *
146770 ATAACTCAAGGCCAGAAGGGTTATCTATCAACAAAGACCTTCGAGTTCGACTACGTTCAGCTCCA
66 ATAACTCAAGGCAAGAAGGGCTATCTATCAACAAAGACCTTCAAGTTCGACTACATTCAGCTCCA
* *
146835 AGGCACTATCATTTGCAGC-TGAGCTTAAGTCGAGA
131 AGGCAC-ATCATTTGCAACAT-AGATTAAGTCGAGA
** * ** *
146870 AGGGTTATCTGTTAAAGACCTTCGAGTTCGATTGTATTTAAC-TCAAAGGCAAATCAAGTTTACA
1 AGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACATTCAACTTCAAAGGCAAATC-A-TTTACA
* * * * * * * *
146934 TCATAGCTTAAGGCAAGAAGGGCTATCTGTCAATAAA-A-TTGTCAAGTTCGATTTCATTCAGCT
64 GCATAACTCAAGGCAAGAAGGGCTATCTATCAACAAAGACCT-TCAAGTTCGACTACATTCAGCT
146997 C
128 C
146998 GATGACACCT
Statistics
Matches: 814, Mismatches: 111, Indels: 66
0.82 0.11 0.07
Matches are distributed among these distances:
163 74 0.09
164 236 0.29
165 174 0.21
166 42 0.05
167 18 0.02
168 240 0.29
169 30 0.04
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.25
Consensus pattern (164 bp):
AGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACATTCAACTTCAAAGGCAAATCATTTACAGC
ATAACTCAAGGCAAGAAGGGCTATCTATCAACAAAGACCTTCAAGTTCGACTACATTCAGCTCCA
AGGCACATCATTTGCAACATAGATTAAGTCGAGA
Found at i:147661 original size:4 final size:4
Alignment explanation
Indices: 147654--147684 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
147644 CCATGCATGT
147654 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA
147685 GTTGAACAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAA
Found at i:147755 original size:14 final size:14
Alignment explanation
Indices: 147736--147775 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
147726 ATTGTGAAGT
147736 AATCCCTGCA-AATA
1 AATCCCTGCATAA-A
147750 AATCCCTGCATAAA
1 AATCCCTGCATAAA
*
147764 AATCTCTGCATA
1 AATCCCTGCATA
147776 TAGACAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 22 0.92
15 2 0.08
ACGTcount: A:0.40, C:0.28, G:0.07, T:0.25
Consensus pattern (14 bp):
AATCCCTGCATAAA
Found at i:153645 original size:20 final size:20
Alignment explanation
Indices: 153620--153657 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
153610 CCCCTTTTGA
*
153620 AGGGGAACCGATTCCCCCAC
1 AGGGGAACCGATACCCCCAC
*
153640 AGGGGAATCGATACCCCC
1 AGGGGAACCGATACCCCC
153658 TTGGGGTTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.37, G:0.26, T:0.11
Consensus pattern (20 bp):
AGGGGAACCGATACCCCCAC
Found at i:161270 original size:15 final size:15
Alignment explanation
Indices: 161233--161273 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
161223 AAATTATATA
*
161233 TTTTATT-TATTTAT
1 TTTTATTATTTTTAT
161247 TTTTATTATTTTTAT
1 TTTTATTATTTTTAT
161262 CTTTT-TTATTTT
1 -TTTTATTATTTT
161274 GGTAGGCCCC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 7 0.29
15 13 0.54
16 4 0.17
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTTATTATTTTTAT
Found at i:177302 original size:16 final size:16
Alignment explanation
Indices: 177281--177312 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
177271 GTCGAAACCT
177281 TTGATTTTTCAGAGAA
1 TTGATTTTTCAGAGAA
177297 TTGATTTTTCAGAGAA
1 TTGATTTTTCAGAGAA
177313 ACATTTTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (16 bp):
TTGATTTTTCAGAGAA
Found at i:190607 original size:282 final size:282
Alignment explanation
Indices: 190103--190669 Score: 1118
Period size: 282 Copynumber: 2.0 Consensus size: 282
190093 ATAGTGTTTC
190103 TTTTTTTTTCTTTGTCCTTTAAATTTTGCAGTTGATACAATATTCTACAAGGTACTACTGTGCTT
1 TTTTTTTTTCTTTGTCCTTTAAATTTTGCAGTTGATACAATATTCTACAAGGTACTACTGTGCTT
190168 TCTTGATTCTCTATGTTTCAAACAAAAAGCAGTGGTAGCTGTCCCTTGTGAAGAAGAATTGATTT
66 TCTTGATTCTCTATGTTTCAAACAAAAAGCAGTGGTAGCTGTCCCTTGTGAAGAAGAATTGATTT
190233 GCCACTTGAAAGTCATCTCCTATAGCCATGTGTTAATATAATGTATTTACTTATTTCAATGGTAC
131 GCCACTTGAAAGTCATCTCCTATAGCCATGTGTTAATATAATGTATTTACTTATTTCAATGGTAC
190298 CAAAAATAGGTATGTAGATCGCTCTGGCCATTTGCCTGTATTTGTAAGCACATGGATGGAAAAAT
196 CAAAAATAGGTATGTAGATCGCTCTGGCCATTTGCCTGTATTTGTAAGCACATGGATGGAAAAAT
190363 AAAGTGGTCGGGGTTAAACAGT
261 AAAGTGGTCGGGGTTAAACAGT
190385 TTTTTTTTTCTTTGTCCTTTAAATTTTGCAGTTGATACAATATTCTACAAGGTACTACTGTGCTT
1 TTTTTTTTTCTTTGTCCTTTAAATTTTGCAGTTGATACAATATTCTACAAGGTACTACTGTGCTT
190450 TCTTGATTCTTCTATGTTTCAAACAAAAAGCAGTGGTAGCTGTCCCTTGTGAAGAAGAATTGATT
66 TCTTGATTC-TCTATGTTTCAAACAAAAAGCAGTGGTAGCTGTCCCTTGTGAAGAAGAATTGATT
190515 TGCCACTTG-AAGTCATCTCCTATAGCCATGTGTTAATATAATGTATTTACTTATTTCAATGGTA
130 TGCCACTTGAAAGTCATCTCCTATAGCCATGTGTTAATATAATGTATTTACTTATTTCAATGGTA
190579 CCAAAAATAGGTATGTAGATCGCTCTGGCCATTTGCCTGTATTTGTAAGCACATGGATGGAAAAA
195 CCAAAAATAGGTATGTAGATCGCTCTGGCCATTTGCCTGTATTTGTAAGCACATGGATGGAAAAA
190644 TAAAGTGGTCGGGGTTAAACAGT
260 TAAAGTGGTCGGGGTTAAACAGT
190667 TTT
1 TTT
190670 AAGTATAATT
Statistics
Matches: 284, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
282 220 0.77
283 64 0.23
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.38
Consensus pattern (282 bp):
TTTTTTTTTCTTTGTCCTTTAAATTTTGCAGTTGATACAATATTCTACAAGGTACTACTGTGCTT
TCTTGATTCTCTATGTTTCAAACAAAAAGCAGTGGTAGCTGTCCCTTGTGAAGAAGAATTGATTT
GCCACTTGAAAGTCATCTCCTATAGCCATGTGTTAATATAATGTATTTACTTATTTCAATGGTAC
CAAAAATAGGTATGTAGATCGCTCTGGCCATTTGCCTGTATTTGTAAGCACATGGATGGAAAAAT
AAAGTGGTCGGGGTTAAACAGT
Found at i:198280 original size:14 final size:14
Alignment explanation
Indices: 198261--198315 Score: 65
Period size: 14 Copynumber: 3.7 Consensus size: 14
198251 TTTTTTCATT
198261 GAAAAAACCGAACC
1 GAAAAAACCGAACC
* *
198275 GAAAAACCCGAACT
1 GAAAAAACCGAACC
198289 GTTAAAAAAACCGAACC
1 G---AAAAAACCGAACC
198306 GAAAAAACCG
1 GAAAAAACCG
198316 GTTTCAGTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
14 22 0.65
17 12 0.35
ACGTcount: A:0.55, C:0.25, G:0.15, T:0.05
Consensus pattern (14 bp):
GAAAAAACCGAACC
Found at i:200347 original size:28 final size:28
Alignment explanation
Indices: 200303--200357 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
200293 TCATGTTTTC
* * **
200303 TGCATGGGATCATATCTCTGTCCTATTA
1 TGCATGAGATCAAATCTCAATCCTATTA
200331 TGCATGAGATCAAATCTCAATCCTATT
1 TGCATGAGATCAAATCTCAATCCTATT
200358 TCTGTCTAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (28 bp):
TGCATGAGATCAAATCTCAATCCTATTA
Found at i:205417 original size:149 final size:146
Alignment explanation
Indices: 205165--205476 Score: 473
Period size: 149 Copynumber: 2.1 Consensus size: 146
205155 TATAATTGCA
*
205165 CCGAAGTG-CCACATAGAATTGCACCGTAGTGCCATATAATAATATCCATAAGGACCACATATCA
1 CCGAAG-GACCACGTAGAATTGCACCGTAGTGCCATATAATAATATCCATAAGGACCACATATCA
* * *
205229 TTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTTACAAGACTTCACACATGTT
65 TTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACAAGACTTCACACATGTT
*
205294 CCACAGAATATATATATATC
130 CCA-AG-A-ATACATATATC
* * * *
205314 CCGAAGGATCGCGTAGAATTGCACTGTAGTGCCATATAATAATGTCCATAAGGACCACATATCAT
1 CCGAAGGACCACGTAGAATTGCACCGTAGTGCCATATAATAATATCCATAAGGACCACATATCAT
* * *
205379 TCCTTAAGAATCATATACATATGCCAAGGATCACGTATGTGTCTCACCAGACTTCACACATGTTC
66 TCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACAAGACTTCACACATGTTC
205444 CAAGAATACATATATC
131 CAAGAATACATATATC
205460 CCGAAGGACCACGTAGA
1 CCGAAGGACCACGTAGA
205477 CCCTCGACTC
Statistics
Matches: 148, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
146 25 0.17
147 1 0.01
148 3 0.02
149 119 0.80
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (146 bp):
CCGAAGGACCACGTAGAATTGCACCGTAGTGCCATATAATAATATCCATAAGGACCACATATCAT
TCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACAAGACTTCACACATGTTC
CAAGAATACATATATC
Found at i:206792 original size:21 final size:21
Alignment explanation
Indices: 206768--206810 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
206758 TTTTGTTCGT
* * *
206768 TTGAGGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
206789 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
206810 T
1 T
206811 AGCCCAGAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.14, C:0.26, G:0.30, T:0.30
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:212593 original size:27 final size:26
Alignment explanation
Indices: 212566--212622 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
212556 CCTCAGAAAT
212566 TTTATTAATATAAATCCATCCCCTAA
1 TTTATTAATATAAATCCATCCCCTAA
* * * *
212592 TTTCTTAATTTAAATTCATCTCCTAA
1 TTTATTAATATAAATCCATCCCCTAA
212618 GTTTA
1 -TTTA
212623 AGTTCACCCC
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.19, G:0.02, T:0.46
Consensus pattern (26 bp):
TTTATTAATATAAATCCATCCCCTAA
Found at i:219302 original size:21 final size:21
Alignment explanation
Indices: 219258--219307 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
219248 ATCCGAAAAA
* * *
219258 ATCGGATATCCGAAAATTCGG
1 ATCGAATATCCGAAAATCCAG
*
219279 ATCGAATATCCGAATATCCAG
1 ATCGAATATCCGAAAATCCAG
219300 ATCCGAAT
1 AT-CGAAT
219308 CCGATTTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 19 0.79
22 5 0.21
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (21 bp):
ATCGAATATCCGAAAATCCAG
Found at i:219525 original size:25 final size:25
Alignment explanation
Indices: 219490--219540 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
219480 AAAAGATGAC
*
219490 ATATTCTGTAAACAAACAATAAAAT
1 ATATTCAGTAAACAAACAATAAAAT
*
219515 ATATTCAGTAAACAAGCAATAAAAT
1 ATATTCAGTAAACAAACAATAAAAT
219540 A
1 A
219541 ACCGATACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.57, C:0.12, G:0.06, T:0.25
Consensus pattern (25 bp):
ATATTCAGTAAACAAACAATAAAAT
Found at i:238619 original size:20 final size:20
Alignment explanation
Indices: 238591--238635 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
238581 TTCTTTTAAT
*
238591 ATTTTATTTTAAAAATAAAA
1 ATTTAATTTTAAAAATAAAA
* *
238611 ATTTAATTTTATAGATAAAA
1 ATTTAATTTTAAAAATAAAA
238631 ATTTA
1 ATTTA
238636 TTAAAAACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
ATTTAATTTTAAAAATAAAA
Done.