genome.fa.s9449.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009449.1 Hibiscus syriacus cultivar Beakdansim tig00113550_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86258

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5630--5676	20	2.6	17	78	18	58	21	29	19	29	1.97
5638--5675	20	1.9	20	94	0	67	23	28	18	28	1.98
6500--6558	31	1.9	31	82	6	75	18	27	28	25	1.98
12341--12377	12	3.1	12	96	0	65	37	0	21	40	1.54
12642--12681	21	1.9	21	89	0	62	12	27	35	25	1.92
13735--13921	31	6.0	31	88	3	243	22	16	21	40	1.91
13735--13921	93	2.0	93	88	2	277	22	16	21	40	1.91
13735--13921	62	3.0	62	88	0	275	22	16	21	40	1.91
15935--16056	31	3.9	31	70	12	79	17	24	27	30	1.97
15935--16058	63	2.0	63	82	6	153	16	24	28	30	1.97
16075--16124	25	2.0	25	88	0	73	30	8	18	44	1.78
18637--18680	19	2.3	19	84	0	52	36	29	11	22	1.89
18738--18786	20	2.5	19	87	9	71	46	20	12	20	1.82
19293--19344	20	2.5	20	87	3	77	50	19	17	13	1.78
21115--21227	21	5.4	22	72	8	67	22	12	30	34	1.91
21531--21643	21	5.4	21	78	8	122	21	36	19	23	1.95
21525--21643	42	2.8	41	88	2	166	21	36	18	23	1.95
22950--22994	13	3.4	13	81	6	63	24	0	17	57	1.40
23066--23095	14	2.1	14	93	0	51	10	20	26	43	1.83
23079--23163	20	4.3	20	71	3	73	15	17	21	45	1.85
23354--23539	20	9.4	20	83	1	176	12	14	24	48	1.78
23354--23540	60	3.1	60	84	4	225	12	14	24	48	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26148--26201	24	2.2	24	93	0	90	40	16	18	24	1.90
26148--26215	24	2.8	24	84	0	64	38	16	17	27	1.91
27142--27211	20	3.5	20	69	21	56	34	12	21	31	1.91
27235--27456	20	11.0	20	68	14	68	22	14	25	38	1.92
27363--27456	40	2.3	40	96	0	170	18	14	31	35	1.91
38468--38549	29	2.8	29	94	1	137	32	14	9	42	1.79
43220--43301	29	2.8	29	94	1	137	32	14	9	42	1.79
49098--49166	23	3.0	23	89	0	102	26	26	27	20	1.99
49182--49495	103	3.0	103	95	0	565	36	22	13	26	1.92
54960--55029	34	2.1	34	100	0	140	35	14	17	32	1.90
55076--55108	14	2.4	14	94	0	57	57	0	6	36	1.23
55977--56070	31	3.0	29	75	13	89	27	5	12	54	1.60
58146--58173	2	14.0	2	100	0	56	50	0	0	50	1.00
59391--59416	2	13.0	2	100	0	52	50	0	0	50	1.00
60500--60531	14	2.1	16	88	11	50	53	3	0	43	1.16
60507--60562	16	3.5	16	85	7	69	55	0	0	44	0.99
61873--61915	18	2.4	18	85	14	54	23	9	0	67	1.19
68315--68383	30	2.2	31	84	5	86	68	5	17	8	1.36
69960--70002	18	2.4	18	88	7	61	25	9	0	65	1.22
78328--78427	32	3.2	31	79	12	107	26	18	22	34	1.96
79710--79746	18	2.0	19	89	5	58	43	21	13	21	1.87
81351--81382	14	2.1	16	88	11	50	53	3	0	43	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81584--81635	20	2.6	20	96	0	95	38	26	13	21	1.90
81621--81703	21	4.0	21	70	6	69	32	24	18	25	1.97
81690--81880	20	9.6	20	81	7	221	35	26	19	18	1.95
81690--81880	60	3.2	60	83	2	253	35	26	19	18	1.95
82259--82329	33	2.2	33	92	0	115	11	22	18	47	1.80
82424--82497	14	4.7	14	73	23	67	40	22	27	9	1.85
82443--82513	33	2.2	33	92	0	115	42	25	23	8	1.82
82509--82606	19	5.7	19	70	22	81	10	24	22	42	1.84
82531--82620	14	5.7	14	74	23	81	8	25	23	42	1.83
82514--82628	33	3.5	33	95	0	212	9	24	20	45	1.81
84310--84774	90	5.1	93	93	5	842	22	12	19	45	1.83
84817--84951	19	7.6	19	74	16	110	45	26	18	9	1.80
84853--84946	33	2.9	32	88	4	152	46	25	19	8	1.77
84817--84951	52	2.6	51	74	15	141	45	26	18	9	1.80
84963--85013	14	3.7	14	78	5	59	9	21	25	43	1.83
84947--85032	27	2.8	33	74	20	112	10	20	23	45	1.82
85004--85069	19	3.4	19	87	6	89	10	16	27	45	1.80

Tables:   1

The End!