Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000945.1 Hibiscus syriacus cultivar Beakdansim tig00001887_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93576

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2196--2229
17
2.1
16
88
5
50
58
5
17
17
1.57
4743--4768
12
2.2
12
100
0
52
23
7
7
61
1.49
7388--7444
29
2.0
29
96
0
105
36
15
3
43
1.64
10972--11016
20
2.2
20
88
0
63
40
17
15
26
1.90
16383--16444
24
2.6
24
85
10
74
43
3
8
45
1.49
16407--16454
24
2.0
24
84
8
62
41
0
14
43
1.45
19344--19500
21
7.8
20
72
7
84
38
24
17
19
1.92
19467--19660
20
9.6
20
81
5
221
35
25
19
19
1.95
19467--19660
60
3.2
60
83
0
253
35
25
19
19
1.95
20043--20113
33
2.2
33
92
0
115
11
22
18
47
1.80
20195--20302
21
5.7
20
73
17
104
46
17
25
11
1.81
20195--20302
41
2.9
37
84
13
134
46
17
25
11
1.81
20253--20309
14
3.7
14
72
20
51
45
22
22
8
1.80
20245--20325
33
2.5
33
93
0
135
48
22
20
8
1.77
20321--20448
19
7.1
19
70
19
78
11
25
17
45
1.82
20343--20399
14
3.7
14
70
20
51
10
24
21
43
1.83
20326--20448
33
3.5
33
85
10
156
11
24
17
46
1.81
20384--20448
21
3.1
21
82
4
96
10
26
15
47
1.78
22146--22335
93
2.1
92
98
1
371
22
12
19
45
1.83
22383--22429
19
2.4
20
89
3
69
44
25
17
12
1.84
22383--22459
19
4.3
19
73
17
65
45
27
16
10
1.80
22455--22608
19
8.6
19
75
14
139
12
19
22
46
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22477--22533
14
3.7
14
72
20
51
12
21
21
45
1.83
22460--22590
33
3.8
33
85
7
172
11
19
21
47
1.81
24531--24566
14
2.6
14
95
0
63
33
0
22
44
1.53
24673--24737
19
3.4
19
97
2
121
46
16
21
15
1.84
24746--24896
19
8.7
19
72
21
143
15
21
18
45
1.86
24746--24865
52
2.3
52
95
1
213
15
22
17
45
1.85
24803--24910
33
3.2
33
87
7
173
12
21
19
46
1.83
27193--27217
12
2.1
12
100
0
50
0
28
0
72
0.86
28120--28349
20
11.5
20
84
1
228
19
18
24
37
1.94
28336--28418
21
4.0
21
75
6
78
25
15
24
34
1.95
28316--28414
42
2.4
43
77
11
100
21
17
23
38
1.93
32412--32464
2
26.5
2
100
0
106
49
0
0
50
1.00
32831--32862
2
16.5
2
93
6
57
50
0
0
50
1.00
34883--34948
2
33.0
2
84
0
87
0
54
1
43
1.09
34883--34957
12
6.4
12
82
8
66
0
52
2
45
1.15
38553--38596
22
2.0
21
86
4
61
63
0
6
29
1.20
38553--38591
19
2.0
21
90
10
64
66
0
5
28
1.12
38470--38717
129
2.0
125
84
7
324
56
4
10
28
1.53
41679--41966
143
2.0
145
98
1
562
27
13
22
35
1.92
49525--49571
23
2.0
25
87
8
71
61
10
12
14
1.56
49523--49576
23
2.4
21
80
17
63
62
11
12
12
1.54
60132--60178
15
3.1
15
84
3
58
31
8
12
46
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64672--64735
20
3.2
20
77
4
74
14
20
23
42
1.88
64672--64766
41
2.3
41
82
8
113
16
21
22
40
1.92
65294--65331
6
6.3
6
100
0
76
0
18
47
34
1.49
77105--77870
299
2.6
295
89
3
1112
40
19
13
25
1.89

Tables:   1

The End!