Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009450.1 Hibiscus syriacus cultivar Beakdansim tig00113645_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16326
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.22
Found at i:2722 original size:32 final size:32
Alignment explanation
Indices: 2686--2767 Score: 112
Period size: 33 Copynumber: 2.6 Consensus size: 32
2676 TGGCCCGGGG
* *
2686 TTGCCGATGGTGACCGAGACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGACACCCGCCTGGGA
*
2718 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGA-GACACCCGCCTGGGA
*
2751 CTGCCGATGGTG-CCGAG
1 TTGCCGATGGTGACCGAG
2768 GCCGAGCTCC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
31 1 0.02
32 21 0.47
33 23 0.51
ACGTcount: A:0.15, C:0.30, G:0.37, T:0.18
Consensus pattern (32 bp):
TTGCCGATGGTGACCGAGACACCCGCCTGGGA
Found at i:2749 original size:33 final size:33
Alignment explanation
Indices: 2686--2770 Score: 120
Period size: 32 Copynumber: 2.6 Consensus size: 33
2676 TGGCCCGGGG
* * *
2686 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
2718 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
*
2751 CTGCCGATGGTG-CCGAGGCC
1 TTGCCGATGGTGACCGAGGCC
2771 GAGCTCCCGC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
32 25 0.52
33 23 0.48
ACGTcount: A:0.14, C:0.32, G:0.36, T:0.18
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:2834 original size:31 final size:33
Alignment explanation
Indices: 2799--2874 Score: 111
Period size: 33 Copynumber: 2.4 Consensus size: 33
2789 CCCGGGGTTG
* *
2799 CGATGGTGACCGA-GACACCCGTCT-GGTTTGC
1 CGATGGTGACCGAGGACACCCGCCTGGGATTGC
*
2830 CGATGGTGACCGAGGCCACCCGCCTGGGATTGC
1 CGATGGTGACCGAGGACACCCGCCTGGGATTGC
2863 CGATGGTGACCG
1 CGATGGTGACCG
2875 GCTCACGCAC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
31 13 0.32
32 9 0.22
33 18 0.45
ACGTcount: A:0.16, C:0.30, G:0.36, T:0.18
Consensus pattern (33 bp):
CGATGGTGACCGAGGACACCCGCCTGGGATTGC
Found at i:2855 original size:108 final size:110
Alignment explanation
Indices: 2664--2870 Score: 391
Period size: 108 Copynumber: 1.9 Consensus size: 110
2654 TCTGTGCGCA
2664 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
2729 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGCCGAGGCCGAG
66 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGCCGAGGCCGAG
2774 CTCCCGCACCAATGGCCCGGGGTTG-CGATGGTGACCGAGACACCCGTCT-GGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
*
2837 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTG
66 GACCGAGGCCACCCGCCTGGGACTGCCGATGGTG
2871 ACCGGCTCAC
Statistics
Matches: 96, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
108 47 0.49
109 24 0.25
110 25 0.26
ACGTcount: A:0.14, C:0.33, G:0.36, T:0.17
Consensus pattern (110 bp):
CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
GACCGAGGCCACCCGCCTGGGACTGCCGATGGTGCCGAGGCCGAG
Found at i:2989 original size:32 final size:32
Alignment explanation
Indices: 2953--3039 Score: 129
Period size: 33 Copynumber: 2.7 Consensus size: 32
2943 CCAATGGCCC
*
2953 GGGTTTGCCGATGGTGACCGAGACACCCGTCT
1 GGGTTTGCCGATGGTGACCGAGACACCCGCCT
*
2985 GGGTTTGCCGATGGTGACCGAGGCCACCCGCCT
1 GGGTTTGCCGATGGTGACCGA-GACACCCGCCT
* *
3018 TGGATTGCCGATGGTGACCGAG
1 GGGTTTGCCGATGGTGACCGAG
3040 GCTCACGCAC
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
32 22 0.44
33 28 0.56
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.21
Consensus pattern (32 bp):
GGGTTTGCCGATGGTGACCGAGACACCCGCCT
Found at i:3167 original size:271 final size:266
Alignment explanation
Indices: 2597--3173 Score: 595
Period size: 271 Copynumber: 2.1 Consensus size: 266
2587 GCCTGGGTTG
* *
2597 CCGAGGCACCCGTCGGGGTTGCCGATGGTGACCGAGGCTCCCGCACCAACGCCCGGTTCTGTGCG
1 CCGA-GCACCCGTCGGGATTGCCGATGGTGACCGAGACTCCCGCACCAACGCCCGGTTCTGTGCG
2662 CACTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATG
65 CACTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATG
*
2727 GTGACCGAGGCCACCCGCCTGGGACTGCCGATGGTGCCGAGGCCGAGCTCCCGCACCAATGGCCC
130 GTGACCGAGGCCACCCGCCTGGGACTGCCGATGGTGCCGA---CGAGCTCACGCACCAA----CC
* ****** * * * *
2792 GGGGTTGCGATGGTGACCGAGACACCCGTCTGGTTTGCCGATGGTGACCGAGGCCACCCGCCTGG
188 GGGGCT-CGATGGTGACCGAGACACCCGTCACCAAAGCCGATGGGGACCCAGACCAACCGCCTGG
2857 GATTGCCGATGGTGA
252 GATTGCCGATGGTGA
* * ** *
2872 CCG-GCTCACG-C---ACAGCCTGATGGTGACCGAGACTCCCGCACCAACGCTCGGTTCTGTGCG
1 CCGAGCACCCGTCGGGATTGCC-GATGGTGACCGAGACTCCCGCACCAACGCCCGGTTCTGTGC-
*
2932 GCACTCCCGCACCAATGGCCCGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGAT
64 GCACTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGAT
* *
2997 GGTGACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGA-G-GCTCACGCA-C-A-CGGGGC
129 GGTGACCGAGGCCACCCGCCTGGGACTGCCGATGGTG-CCGACGAGCTCACGCACCAACCGGGGC
* * * **
3057 -CTGATGGTGACCGAGGCTCCCG-CACCAAAGCTCGGTACTGGCGGCACTCCCGCACCAATGGCC
193 TC-GATGGTGACCGAGACACCCGTCACCAAAGC-C-G-A-TGG-GG-AC-CCAG-ACCAACCGCC
*
3120 -GGGGTTGCCGATGGTGA
249 TGGGATTGCCGATGGTGA
*
3137 CCGAGACACCCGTCTGGGTTTGCCGATGGTGACCGAG
1 CCGAG-CACCCGTC-GGGATTGCCGATGGTGACCGAG
3174 GCCACCCGCC
Statistics
Matches: 250, Mismatches: 33, Indels: 42
0.77 0.10 0.13
Matches are distributed among these distances:
258 4 0.02
259 19 0.08
260 6 0.02
261 1 0.00
262 3 0.01
263 1 0.00
264 2 0.01
265 22 0.09
266 8 0.03
267 12 0.05
268 2 0.01
269 3 0.01
270 39 0.16
271 112 0.45
272 8 0.03
273 5 0.02
275 3 0.01
ACGTcount: A:0.16, C:0.34, G:0.34, T:0.17
Consensus pattern (266 bp):
CCGAGCACCCGTCGGGATTGCCGATGGTGACCGAGACTCCCGCACCAACGCCCGGTTCTGTGCGC
ACTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGG
TGACCGAGGCCACCCGCCTGGGACTGCCGATGGTGCCGACGAGCTCACGCACCAACCGGGGCTCG
ATGGTGACCGAGACACCCGTCACCAAAGCCGATGGGGACCCAGACCAACCGCCTGGGATTGCCGA
TGGTGA
Found at i:3174 original size:167 final size:169
Alignment explanation
Indices: 2774--3342 Score: 948
Period size: 167 Copynumber: 3.4 Consensus size: 169
2764 CGAGGCCGAG
2774 CTCCCGCACCAATGGCCCGGGGTTG-CGATGGTGACCGAGACACCCGTCT-GGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
*
2837 GACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACC--GGCTCACGCACA----GCCTGATGGT
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGCCTGATGGT
*
2896 GACCGAGACTCCCGCACCAACGCTCGGTTCTGTGCGGCA
131 GACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
*
2935 CTCCCGCACCAATGGCCCGGGTTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
3000 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGCCTGATGGT
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGCCTGATGGT
* *
3065 GACCGAGGCTCCCGCACCAAAGCTCGGTACTG-GCGGCA
131 GACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
3103 CTCCCGCACCAATGG-CCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
* *
3167 GACCGAGGCCACCCGCCTTGGATTACCGATGGTGACCGAGGCGCACGCACACGGGGGCCTGATGG
66 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACAC-GGGGCCTGATGG
3232 TGACCGAGGCTCCCGCACCAACGCTC-GTTCTGTGCGGCA
130 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
***
3271 CT-CC-CACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTTTTTTTGCCGATGGT
1 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
3334 GACCGAGGC
66 GACCGAGGC
3343 ACGCACACGT
Statistics
Matches: 384, Mismatches: 13, Indels: 16
0.93 0.03 0.04
Matches are distributed among these distances:
161 24 0.06
162 24 0.06
163 50 0.13
165 12 0.03
166 9 0.02
167 160 0.42
168 66 0.17
169 39 0.10
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (169 bp):
CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGCCTGATGGT
GACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
Found at i:3196 original size:33 final size:33
Alignment explanation
Indices: 3127--3208 Score: 112
Period size: 33 Copynumber: 2.5 Consensus size: 33
3117 GCCGGGGTTG
* * * *
3127 CCGATGGTGACCGA-GACACCCGTCTGGGTTTG
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
*
3159 CCGATGGTGACCGAGGCCACCCGCCTTGGATTA
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
3192 CCGATGGTGACCGAGGC
1 CCGATGGTGACCGAGGC
3209 GCACGCACAC
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
32 14 0.32
33 30 0.68
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.18
Consensus pattern (33 bp):
CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
Found at i:11137 original size:11 final size:11
Alignment explanation
Indices: 11121--11153 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
11111 CGATAATGTC
11121 TCGCCGGAGCA
1 TCGCCGGAGCA
*
11132 TCGCCGGAGCG
1 TCGCCGGAGCA
11143 TCGCCGGAGCA
1 TCGCCGGAGCA
11154 CCACCGGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.15, C:0.36, G:0.39, T:0.09
Consensus pattern (11 bp):
TCGCCGGAGCA
Found at i:11609 original size:31 final size:32
Alignment explanation
Indices: 11529--11610 Score: 114
Period size: 31 Copynumber: 2.6 Consensus size: 32
11519 TGGCCCGGGT
* **
11529 TGCCGATGGTGACCGA-GACACCCGTCTGGGTT
1 TGCCGATGGTGACCGAGGCCACCCG-CTGGGAC
11561 TGCCGATGGTGACCGAGGCCACCC-CTGGGAC
1 TGCCGATGGTGACCGAGGCCACCCGCTGGGAC
11592 TGCCGATGGTGACCGAGGC
1 TGCCGATGGTGACCGAGGC
11611 TGCACGGCCG
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
31 24 0.52
32 16 0.35
33 6 0.13
ACGTcount: A:0.16, C:0.30, G:0.37, T:0.17
Consensus pattern (32 bp):
TGCCGATGGTGACCGAGGCCACCCGCTGGGAC
Found at i:11639 original size:24 final size:24
Alignment explanation
Indices: 11593--11639 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
11583 CCCTGGGACT
* *
11593 GCCGATGGTGACCGAGGCTGCACG
1 GCCGATGGTGACCGAGCCCGCACG
**
11617 GCCGATGGTGACCGCTCCCGCAC
1 GCCGATGGTGACCGAGCCCGCAC
11640 CAATGGCCCG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.15, C:0.36, G:0.36, T:0.13
Consensus pattern (24 bp):
GCCGATGGTGACCGAGCCCGCACG
Found at i:11668 original size:124 final size:125
Alignment explanation
Indices: 11507--11741 Score: 429
Period size: 124 Copynumber: 1.9 Consensus size: 125
11497 CTGTGCGGCA
*
11507 CTCCCGCACCAATGGCCCGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
1 CTCCCGCACCAATGGCCCGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
11572 ACCGAGGCCA-CC-CCTGGGACTGCCGATGGTGACCGAGGCTGCACGGCCGATGGTGACCG
66 ACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCT-CACGGCCGATGGTGACCG
11631 CTCCCGCACCAATGGCCCGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
1 CTCCCGCACCAATGGCCCGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
*
11696 ACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACG
66 ACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACG
11742 CACAAGCGCC
Statistics
Matches: 107, Mismatches: 2, Indels: 3
0.96 0.02 0.03
Matches are distributed among these distances:
124 74 0.69
125 6 0.06
126 27 0.25
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.17
Consensus pattern (125 bp):
CTCCCGCACCAATGGCCCGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
ACCGAGGCCACCCGCCTGGGACTGCCGATGGTGACCGAGGCTCACGGCCGATGGTGACCG
Found at i:11715 original size:33 final size:33
Alignment explanation
Indices: 11655--11736 Score: 130
Period size: 33 Copynumber: 2.5 Consensus size: 33
11645 GCCCGGGTTA
* * *
11655 CCGATGGTGACCGA-GACACCCGTCTGGGTTTG
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTG
11687 CCGATGGTGACCGAGGCCACCCGCCTGGGATTG
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTG
11720 CCGATGGTGACCGAGGC
1 CCGATGGTGACCGAGGC
11737 TCACGCACAA
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
32 14 0.30
33 32 0.70
ACGTcount: A:0.16, C:0.30, G:0.37, T:0.17
Consensus pattern (33 bp):
CCGATGGTGACCGAGGCCACCCGCCTGGGATTG
Found at i:11888 original size:33 final size:33
Alignment explanation
Indices: 11819--11903 Score: 127
Period size: 33 Copynumber: 2.6 Consensus size: 33
11809 TGGCCCGGGG
* * *
11819 TTGCCGATGGTGACCGA-GACACCCGTCTGGGT
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
*
11851 TTGCCGATGGTGACCGAGGCCACCCGCCTTGGA
1 TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
11884 TTGCCGATGGTGACCGAGGC
1 TTGCCGATGGTGACCGAGGC
11904 TCACGCACAC
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 17 0.35
33 31 0.65
ACGTcount: A:0.15, C:0.29, G:0.35, T:0.20
Consensus pattern (33 bp):
TTGCCGATGGTGACCGAGGCCACCCGCCTGGGA
Found at i:11906 original size:167 final size:167
Alignment explanation
Indices: 11631--12207 Score: 996
Period size: 167 Copynumber: 3.4 Consensus size: 167
11621 ATGGTGACCG
*
11631 CTCCCGCACCAATGGCCCGGGTTACCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
1 CTCCCGCACCAATGGCCCGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
* *
11696 ACCGAGGCCACCCGCCTGGGATTGCCGATGGTGACCGAGGCTCACGCACAAGCGCCTGATGGTGA
66 ACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGCCTGATGGTGA
*
11761 CCGAGACTCCCGCACCAACGCTC-GTTCTGTGCGGCA
131 CCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
11797 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
1 CTCCCGCACCAATGGCCC-GGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
*
11862 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACACGGGGGCCTGATGG
65 GACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACA--AGGGCCTGATGG
* *
11927 TGACCGAGGCTCCCGCACCAAAGCTCGGTACTGTGCGGCA
128 TGACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
11967 CTCCCGCACCAATGG-CCGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
1 CTCCCGCACCAATGGCCCGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
* *
12031 ACCGAGGCCACCCGCCTTGGATTACCGATGGTGACCGAGGCGCACGCACAAGGGGCCTGATGGTG
66 ACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACAA-GGGCCTGATGGTG
12096 ACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
130 ACCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
**
12134 CTCCCGCACCAATGGCCCGGGGTTGCCGATGGTGACCGAGACACCCGTCTGTTTTTGCCGATGGT
1 CTCCCGCACCAATGGCCC-GGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGT
12199 GACCGAGGC
65 GACCGAGGC
12208 ACGCACACGT
Statistics
Matches: 390, Mismatches: 14, Indels: 11
0.94 0.03 0.03
Matches are distributed among these distances:
166 18 0.05
167 159 0.41
168 97 0.25
169 89 0.23
170 27 0.07
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.17
Consensus pattern (167 bp):
CTCCCGCACCAATGGCCCGGGTTGCCGATGGTGACCGAGACACCCGTCTGGGTTTGCCGATGGTG
ACCGAGGCCACCCGCCTTGGATTGCCGATGGTGACCGAGGCTCACGCACAAGGGCCTGATGGTGA
CCGAGGCTCCCGCACCAACGCTCGGTTCTGTGCGGCA
Found at i:12059 original size:33 final size:33
Alignment explanation
Indices: 11990--12071 Score: 112
Period size: 33 Copynumber: 2.5 Consensus size: 33
11980 GGCCGGGTTG
* * * *
11990 CCGATGGTGACCGA-GACACCCGTCTGGGTTTG
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
*
12022 CCGATGGTGACCGAGGCCACCCGCCTTGGATTA
1 CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
12055 CCGATGGTGACCGAGGC
1 CCGATGGTGACCGAGGC
12072 GCACGCACAA
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
32 14 0.32
33 30 0.68
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.18
Consensus pattern (33 bp):
CCGATGGTGACCGAGGCCACCCGCCTGGGATTA
Done.