genome.fa.s9451.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009451.1 Hibiscus syriacus cultivar Beakdansim tig00113647_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  213755

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12326--12472	57	2.6	56	85	3	186	51	14	1	32	1.52
12326--12480	28	5.4	29	86	3	190	49	16	1	31	1.57
20368--20549	63	2.9	63	84	0	229	15	30	7	46	1.73
24146--24210	30	2.2	29	83	2	76	38	4	21	35	1.74
26749--26786	20	1.9	19	89	5	58	76	2	2	18	1.02
26749--26794	19	2.4	19	82	13	58	76	2	4	17	1.06
26832--26899	26	2.6	26	80	15	70	47	7	2	42	1.46
26844--27005	22	7.3	23	75	16	146	44	9	3	42	1.54
26843--27012	65	2.5	67	79	12	204	44	8	3	42	1.52
28184--28523	143	2.4	143	91	0	536	23	18	23	34	1.96
28184--28628	72	6.2	71	78	5	385	24	20	21	33	1.97
28205--28596	143	2.7	143	87	2	457	25	19	21	33	1.97
34518--34582	20	3.3	19	79	14	69	29	13	16	40	1.88
35612--35653	15	2.6	16	82	17	52	61	0	4	33	1.17
35934--35960	9	3.0	9	100	0	54	77	0	0	22	0.76
37376--37441	3	21.7	3	96	3	123	34	0	0	65	0.93
38038--38082	24	1.9	23	86	4	63	33	31	0	35	1.58
45565--45616	20	2.6	19	79	8	59	65	1	0	32	1.04
45746--45789	22	2.0	22	81	4	52	50	2	0	47	1.13
47178--47226	3	15.7	3	83	8	62	65	0	0	34	0.93
47731--48466	113	6.5	113	92	0	1141	27	18	14	38	1.91
49157--49495	114	3.0	114	95	0	597	30	20	15	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50154--50231	15	5.4	14	73	23	72	0	21	0	78	0.76
50156--50223	6	10.7	6	76	17	57	0	20	0	79	0.73
50174--50229	3	20.7	3	78	14	52	0	23	0	76	0.78
50159--50229	37	2.0	35	89	10	108	0	22	0	77	0.77
50157--50232	21	3.6	21	85	5	91	0	22	0	77	0.77
50160--50243	42	2.0	42	84	9	109	1	22	1	75	0.95
57487--57518	15	2.1	15	94	0	55	46	9	18	25	1.79
61447--61498	20	2.6	19	79	8	59	65	1	0	32	1.04
61628--61671	22	2.0	22	81	4	52	50	2	0	47	1.13
63049--63097	3	15.7	3	83	8	62	65	0	0	34	0.93
63702--63727	2	13.0	2	100	0	52	50	0	0	50	1.00
63616--63924	101	2.9	103	89	5	460	44	20	7	27	1.78
65098--65135	20	1.9	20	94	0	67	21	15	21	42	1.89
68786--68826	16	2.6	16	88	0	55	39	12	24	24	1.89
77318--77437	61	2.0	61	89	0	186	27	19	25	28	1.98
88115--88188	35	2.1	35	89	0	112	39	0	16	44	1.47
89396--89453	26	2.2	26	78	0	62	22	6	24	46	1.76
103504--103984	79	6.1	79	89	0	683	29	24	10	35	1.89
103583--103974	45	9.7	43	67	22	199	30	24	10	34	1.88
104490--104539	20	2.5	20	100	0	100	30	28	12	30	1.92
107327--107628	54	5.5	55	74	10	249	27	24	21	26	1.99
107334--107426	27	3.4	27	68	16	75	24	26	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107330--107628	108	2.7	109	81	5	280	27	25	21	26	1.99
108500--108627	32	4.0	32	87	4	168	17	29	33	19	1.95
116978--117249	96	2.9	95	85	3	350	12	34	33	19	1.89
117258--117362	32	3.2	32	85	2	147	20	25	31	21	1.98
120797--120890	3	32.0	3	82	4	102	36	3	1	59	1.20
122572--122646	39	1.9	39	83	5	98	49	4	1	45	1.29
123687--123724	15	2.5	15	100	0	76	47	13	26	13	1.79
125241--125282	7	6.0	7	81	8	50	14	16	14	54	1.71
125241--125282	15	3.0	14	83	10	50	14	16	14	54	1.71
127002--127039	2	19.0	2	100	0	76	50	0	0	50	1.00
130417--130666	75	3.3	75	83	0	293	30	14	22	33	1.93
132388--133406	113	9.0	113	87	3	1318	38	15	18	27	1.91
132402--133406	339	2.9	339	91	2	1539	38	14	19	28	1.91
133750--133837	3	30.0	3	84	8	101	37	1	0	61	1.04
135260--135301	2	21.0	2	100	0	84	50	0	0	50	1.00
139537--139618	21	4.0	19	83	14	85	75	0	23	1	0.87
139551--139612	3	22.7	3	77	12	55	75	0	24	0	0.80
139549--139622	6	11.7	6	78	16	69	78	0	21	0	0.75
140283--140621	114	3.0	114	95	0	597	32	15	20	30	1.94
141329--142047	113	6.4	113	92	0	1159	38	14	19	27	1.91
142552--142598	3	15.0	3	82	8	58	34	0	0	65	0.93
144175--144216	20	2.2	19	86	4	57	33	0	2	64	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154001--154041	17	2.4	16	84	11	55	21	2	7	68	1.26
155061--155128	30	2.3	31	82	17	90	35	2	0	61	1.11
162664--162713	23	2.3	23	79	6	68	24	40	20	16	1.91
163398--163423	12	2.2	12	100	0	52	23	53	0	23	1.46
169837--169866	15	1.9	16	93	6	53	80	0	20	0	0.72
173981--174135	54	2.9	54	81	1	177	38	15	21	25	1.92
174497--174556	22	2.7	22	92	0	93	36	18	11	33	1.87
175149--175847	74	9.4	75	86	4	968	26	20	21	32	1.97
176021--176091	3	23.7	3	80	5	81	40	0	0	59	0.98
176023--176091	27	2.6	27	90	4	104	42	0	0	57	0.98
176029--176104	27	3.2	24	76	14	61	46	0	0	53	1.00
187728--188021	75	3.9	75	86	1	365	39	11	17	31	1.85
187991--188081	38	2.4	38	83	3	121	36	12	20	30	1.89
188065--188190	34	3.6	34	70	21	98	44	11	14	30	1.79
188920--189375	89	5.1	89	91	0	628	33	21	7	38	1.80
188920--189375	44	10.3	44	87	1	579	33	21	7	38	1.80
189534--189687	57	2.6	59	79	5	168	31	24	12	31	1.93
189534--189670	57	2.3	59	82	3	170	29	25	13	31	1.94
189732--190075	177	1.9	177	88	2	521	30	21	10	37	1.87
189652--190073	118	3.6	118	86	2	528	29	21	11	37	1.88
189652--190082	59	7.3	57	80	6	434	29	21	11	37	1.88
192649--192718	28	2.5	28	92	0	113	35	28	20	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193019--193061	21	2.0	21	86	9	59	34	4	13	46	1.65
194670--194752	30	2.8	29	80	8	87	16	16	28	37	1.91
194681--194752	29	2.4	30	88	2	101	16	16	29	37	1.91
194952--194998	23	2.0	22	84	15	60	31	2	19	46	1.61
201473--201579	28	3.8	28	89	0	169	38	28	18	14	1.91
213283--213308	13	2.0	13	100	0	52	61	7	0	30	1.24

Tables:   1

The End!