genome.fa.s9455.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009455.1 Hibiscus syriacus cultivar Beakdansim tig00113702_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65774

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9214--9243	4	7.5	4	92	0	51	50	20	0	30	1.49
9608--9642	18	1.9	18	100	0	70	25	34	22	17	1.96
9606--9680	20	3.8	20	87	3	100	20	29	26	24	1.99
11740--11860	64	1.9	63	86	1	170	35	18	18	28	1.94
11758--11901	63	2.3	64	83	6	168	34	20	18	26	1.96
12540--12598	23	2.6	23	83	0	73	18	23	27	30	1.98
12540--12608	23	3.0	23	80	0	57	20	21	24	33	1.97
18092--18212	64	1.9	63	86	5	172	34	19	18	27	1.95
18904--18955	23	2.3	23	82	0	68	21	23	25	30	1.99
26025--26105	31	2.6	31	86	1	119	32	13	8	45	1.74
28850--28935	29	2.9	29	94	1	145	33	13	9	43	1.77
33616--33701	29	2.9	29	94	1	145	33	13	9	43	1.77
37125--37172	3	16.0	3	87	8	71	64	0	2	33	1.05
37371--37768	137	2.9	138	87	1	575	24	16	30	28	1.96
37786--37899	36	3.2	36	88	0	165	44	15	17	21	1.86
37843--38023	65	2.7	66	82	3	204	42	13	17	27	1.86
37906--38132	36	6.4	36	72	8	187	40	12	18	29	1.87
37858--38032	66	2.7	65	82	4	199	41	13	17	28	1.87
38360--38431	37	2.0	37	86	5	103	40	8	18	33	1.80
39885--39935	2	25.5	2	95	0	93	49	1	0	49	1.12
54606--54751	80	1.8	78	84	8	197	43	7	2	46	1.46

Tables:   1

The End!