Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009462.1 Hibiscus syriacus cultivar Beakdansim tig00113725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20687664
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 37 of 91
Found at i:7963553 original size:24 final size:24
Alignment explanation
Indices: 7963526--7963608 Score: 127
Period size: 24 Copynumber: 3.6 Consensus size: 24
7963516 TCCCTCTAGG
7963526 GGGAATCGATTCCCCTTTAAAAGA
1 GGGAATCGATTCCCCTTTAAAAGA
*
7963550 GGGAATCGATTCCCCTTCAAAAGA
1 GGGAATCGATTCCCCTTTAAAAGA
7963574 GGGAATCGATTCCCCTTT--AAG-
1 GGGAATCGATTCCCCTTTAAAAGA
*
7963595 GGGTATCGATTCCC
1 GGGAATCGATTCCC
7963609 TCTGCACCAA
Statistics
Matches: 56, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.23
22 3 0.05
24 40 0.71
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
GGGAATCGATTCCCCTTTAAAAGA
Found at i:7963609 original size:20 final size:21
Alignment explanation
Indices: 7963505--7963608 Score: 102
Period size: 24 Copynumber: 4.7 Consensus size: 21
7963495 GAACCCATGT
* * *
7963505 GGGGTATCGATT-CCCTCTAG
1 GGGGAATCGATTCCCCTTTAA
7963525 GGGGAATCGATTCCCCTTTAAAA
1 GGGGAATCGATTCCCCTTT--AA
*
7963548 GAGGGAATCGATTCCCCTTCAAAA
1 G-GGGAATCGATTCCCCTT--TAA
7963572 GAGGGAATCGATTCCCCTTTAA
1 G-GGGAATCGATTCCCCTTTAA
*
7963594 GGGGTATCGATTCCC
1 GGGGAATCGATTCCC
7963609 TCTGCACCAA
Statistics
Matches: 72, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
20 11 0.15
21 18 0.25
22 3 0.04
23 2 0.03
24 38 0.53
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (21 bp):
GGGGAATCGATTCCCCTTTAA
Found at i:7969444 original size:75 final size:75
Alignment explanation
Indices: 7969319--7969512 Score: 298
Period size: 75 Copynumber: 2.6 Consensus size: 75
7969309 GACCGTTACA
* * *
7969319 CAGGGGGAATCGGTACCCCCCTTAGGGGAAATCGGTTCCCTCCGAGTAATCTGTTATTTCTCGGA
1 CAGGGGGAATCGGTA-CCCCCTTGGGGGGAATCGGTTCCCTCTGAGTAATCTGTTATTTCTCGGA
7969384 GCCAAACCATT
65 GCCAAACCATT
* *
7969395 TAGGGGGAATCGGTACCCCCTTGGGGGGAATCGATTCCCTCTGAGTAATCTGTTATTTCTCGGAG
1 CAGGGGGAATCGGTACCCCCTTGGGGGGAATCGGTTCCCTCTGAGTAATCTGTTATTTCTCGGAG
*
7969460 TCAAACCATT
66 CCAAACCATT
* *
7969470 CAGGGGGGAATCGGTACCCTCTTGGGGGGAATCGGTACCCTCT
1 CA-GGGGGAATCGGTACCCCCTTGGGGGGAATCGGTTCCCTCT
7969513 TGGGGGGAAT
Statistics
Matches: 107, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
75 56 0.52
76 51 0.48
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (75 bp):
CAGGGGGAATCGGTACCCCCTTGGGGGGAATCGGTTCCCTCTGAGTAATCTGTTATTTCTCGGAG
CCAAACCATT
Found at i:7969498 original size:21 final size:21
Alignment explanation
Indices: 7969472--7969526 Score: 110
Period size: 21 Copynumber: 2.6 Consensus size: 21
7969462 AAACCATTCA
7969472 GGGGGGAATCGGTACCCTCTT
1 GGGGGGAATCGGTACCCTCTT
7969493 GGGGGGAATCGGTACCCTCTT
1 GGGGGGAATCGGTACCCTCTT
7969514 GGGGGGAATCGGT
1 GGGGGGAATCGGT
7969527 TCCGTCTGGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.15, C:0.20, G:0.44, T:0.22
Consensus pattern (21 bp):
GGGGGGAATCGGTACCCTCTT
Found at i:7975647 original size:269 final size:269
Alignment explanation
Indices: 7975168--7975706 Score: 1015
Period size: 269 Copynumber: 2.0 Consensus size: 269
7975158 GAAAATTCCC
*
7975168 ATCCACTTGAACCATTTTTGTAAAATTAAAACCCTTTAATAGATAACTTGAAAGCTCTGACAAAC
1 ATCCACTTGAACCATTTTTGTAAAATCAAAACCCTTTAATAGATAACTTGAAAGCTCTGACAAAC
7975233 CCACCAAAAACTCTCTTTCTAGGGATAAATTCTTTGTGAAGCATGATAGTAGAATGAGTATAGTA
66 CCACCAAAAACTCTCTTTCTAGGGATAAATTCTTTGTGAAGCATGATAGTAGAATGAGTATAGTA
*
7975298 TCATATACTGGTTATGGGGATAAAAATAGCATTACTCATAGTAGAAGTGGTACCTCATTATATAA
131 TCATATACTGGTTATGGGGATAAAAATAGAATTACTCATAGTAGAAGTGGTACCTCATTATATAA
* * *
7975363 CTTATCCTAATCACCATTAAGCAATTTCTTTGCTTTATTTTTAGTTATCCACGTCTTGTACTAAG
196 CTTATCCTAATCACCATTAAACAATTTCTTTGCTTTATTTTTAGTCATCCACATCTTGTACTAAG
*
7975428 ATGAAATAT
261 ATAAAATAT
7975437 ATCCACTTGAACCATTTTTGTAAAATCAAAACCCTTTAATAGATAACTTGAAAGCTCTGACAAAC
1 ATCCACTTGAACCATTTTTGTAAAATCAAAACCCTTTAATAGATAACTTGAAAGCTCTGACAAAC
7975502 CCACCAAAAACTCTCTTTCTAGGGATAAATTCTTTGTGAAGCATGATAGTAGAATGAGTATAGTA
66 CCACCAAAAACTCTCTTTCTAGGGATAAATTCTTTGTGAAGCATGATAGTAGAATGAGTATAGTA
*
7975567 TCATATACTGGTTATGGGGATTAAAATAGAATTACTCATAGTAGAAGTGGTACCTCATTATATAA
131 TCATATACTGGTTATGGGGATAAAAATAGAATTACTCATAGTAGAAGTGGTACCTCATTATATAA
7975632 CTTATCCTAATCACCATTAAACAATTTCTTTGCTTTATTTTTAGTCATCCACATCTTGTACTAAG
196 CTTATCCTAATCACCATTAAACAATTTCTTTGCTTTATTTTTAGTCATCCACATCTTGTACTAAG
7975697 ATAAAATAT
261 ATAAAATAT
7975706 A
1 A
7975707 ACCAAACGTA
Statistics
Matches: 263, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
269 263 1.00
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (269 bp):
ATCCACTTGAACCATTTTTGTAAAATCAAAACCCTTTAATAGATAACTTGAAAGCTCTGACAAAC
CCACCAAAAACTCTCTTTCTAGGGATAAATTCTTTGTGAAGCATGATAGTAGAATGAGTATAGTA
TCATATACTGGTTATGGGGATAAAAATAGAATTACTCATAGTAGAAGTGGTACCTCATTATATAA
CTTATCCTAATCACCATTAAACAATTTCTTTGCTTTATTTTTAGTCATCCACATCTTGTACTAAG
ATAAAATAT
Found at i:7978664 original size:2 final size:2
Alignment explanation
Indices: 7978657--7978699 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
7978647 TGTTGTAAAT
7978657 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7978699 T
1 T
7978700 TGTAGATTGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7982746 original size:17 final size:17
Alignment explanation
Indices: 7982724--7982761 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
7982714 AAAATGTCAA
*
7982724 AAATGCTCTTCAGATAC
1 AAATGCTCTTCAAATAC
7982741 AAATGCTCTTCAAATAC
1 AAATGCTCTTCAAATAC
7982758 AAAT
1 AAAT
7982762 ATGACATGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (17 bp):
AAATGCTCTTCAAATAC
Found at i:7993394 original size:14 final size:14
Alignment explanation
Indices: 7993375--7993422 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
7993365 AAATGGTTAA
7993375 ATGGAAAGATAAAT
1 ATGGAAAGATAAAT
*
7993389 ATGG-AAG-TAATGAA
1 ATGGAAAGATAA--AT
7993403 ATGGAAAGATAAAT
1 ATGGAAAGATAAAT
7993417 ATGGAA
1 ATGGAA
7993423 GCGGAAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 3 0.11
13 3 0.11
14 16 0.57
15 3 0.11
16 3 0.11
ACGTcount: A:0.54, C:0.00, G:0.25, T:0.21
Consensus pattern (14 bp):
ATGGAAAGATAAAT
Found at i:8000773 original size:9 final size:9
Alignment explanation
Indices: 8000749--8000790 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
8000739 CAAGGAAAAT
*
8000749 ATAAAGAAA
1 ATAAATAAA
8000758 TATAAATAAA
1 -ATAAATAAA
8000768 ATAAATAAA
1 ATAAATAAA
8000777 ATAAA-AATA
1 ATAAATAA-A
8000786 ATAAA
1 ATAAA
8000791 ATGGGTTGCC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
8 2 0.07
9 20 0.67
10 8 0.27
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.21
Consensus pattern (9 bp):
ATAAATAAA
Found at i:8000778 original size:14 final size:13
Alignment explanation
Indices: 8000744--8000792 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 13
8000734 TGTACCAAGG
8000744 AAAATATAAAGAAAT
1 AAAATA-AAA-AAAT
8000759 ATAAATAAAATAAAT
1 A-AAATAAAA-AAAT
8000774 AAAATAAAAATAAT
1 AAAATAAAAA-AAT
8000788 AAAAT
1 AAAAT
8000793 GGGTTGCCTC
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
13 1 0.03
14 16 0.52
15 9 0.29
16 5 0.16
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (13 bp):
AAAATAAAAAAAT
Found at i:8001482 original size:13 final size:13
Alignment explanation
Indices: 8001464--8001504 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
8001454 AAAATTAATG
8001464 AAAATAAATGAAT
1 AAAATAAATGAAT
*
8001477 AAAATAAATAAAT
1 AAAATAAATGAAT
*
8001490 -AAAT-ATTGAAT
1 AAAATAAATGAAT
8001501 AAAA
1 AAAA
8001505 ATAATAATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
11 5 0.21
12 7 0.29
13 12 0.50
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (13 bp):
AAAATAAATGAAT
Found at i:8002145 original size:13 final size:13
Alignment explanation
Indices: 8002127--8002159 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
8002117 ACCATTGCAA
8002127 AAATAAAA-AAAT
1 AAATAAAATAAAT
8002139 GAAATAAAATAAAT
1 -AAATAAAATAAAT
8002153 AAATAAA
1 AAATAAA
8002160 GATGTAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 15 0.79
14 4 0.21
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (13 bp):
AAATAAAATAAAT
Found at i:8006115 original size:25 final size:25
Alignment explanation
Indices: 8006065--8006126 Score: 67
Period size: 25 Copynumber: 2.6 Consensus size: 25
8006055 TTGTTAGGAT
* * * *
8006065 TAGAGAAT-ATTAGTTTTTAGATTC
1 TAGAGAATGGTTAGTTCTTAAAATC
8006089 TAGAGAATGGTTAGTTCTTAAAATC
1 TAGAGAATGGTTAGTTCTTAAAATC
8006114 T--AGAATGGTTAGT
1 TAGAGAATGGTTAGT
8006127 GGACCATTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
23 12 0.36
24 8 0.24
25 13 0.39
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (25 bp):
TAGAGAATGGTTAGTTCTTAAAATC
Found at i:8007422 original size:16 final size:15
Alignment explanation
Indices: 8007401--8007451 Score: 59
Period size: 17 Copynumber: 3.2 Consensus size: 15
8007391 GTACTGAAGA
8007401 AAATATAAAGAAAAAT
1 AAATATAAA-AAAAAT
8007417 AAATATAAAAATAAAAT
1 AAATAT-AAAA-AAAAT
8007434 AAA-ATAAAAAATAAT
1 AAATATAAAAAA-AAT
8007449 AAA
1 AAA
8007452 ATGTGTTGCC
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
14 2 0.06
15 10 0.31
16 9 0.28
17 11 0.34
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (15 bp):
AAATATAAAAAAAAT
Found at i:8007434 original size:5 final size:5
Alignment explanation
Indices: 8007412--8007453 Score: 50
Period size: 5 Copynumber: 8.0 Consensus size: 5
8007402 AATATAAAGA
8007412 AAAAT AAATAT AAAAAT AAAAT AAAAT AAAA- AATAAT AAAAT
1 AAAAT AAA-AT -AAAAT AAAAT AAAAT AAAAT AA-AAT AAAAT
8007454 GTGTTGCCTC
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
4 2 0.06
5 22 0.67
6 6 0.18
7 3 0.09
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:8007447 original size:17 final size:17
Alignment explanation
Indices: 8007401--8007443 Score: 63
Period size: 16 Copynumber: 2.6 Consensus size: 17
8007391 GTACTGAAGA
*
8007401 AAATATAAAGA-AAAAT
1 AAATATAAAAATAAAAT
8007417 AAATATAAAAATAAAAT
1 AAATATAAAAATAAAAT
8007434 AAA-ATAAAAA
1 AAATATAAAAA
8007444 ATAATAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 17 0.68
17 8 0.32
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (17 bp):
AAATATAAAAATAAAAT
Found at i:8010338 original size:15 final size:15
Alignment explanation
Indices: 8010313--8010365 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 15
8010303 AAATTAATGA
8010313 AAATAAATGAATAAAT
1 AAAT-AATGAATAAAT
* *
8010329 AAATATTGAATAAAA
1 AAATAATGAATAAAT
8010344 ATAATAATGAGA-AAAT
1 A-AATAATGA-ATAAAT
8010360 AAATAA
1 AAATAA
8010366 AGCATATAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
15 15 0.48
16 15 0.48
17 1 0.03
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.25
Consensus pattern (15 bp):
AAATAATGAATAAAT
Found at i:8011868 original size:20 final size:20
Alignment explanation
Indices: 8011843--8011898 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
8011833 ATTTAATTCA
8011843 TGGTGCATCGATGCATGGAT
1 TGGTGCATCGATGCATGGAT
8011863 TGGTGCATCGATGCATGGAT
1 TGGTGCATCGATGCATGGAT
*
8011883 TGGTGCATCGGTGCAT
1 TGGTGCATCGATGCAT
8011899 CACTCTGAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.18, C:0.16, G:0.36, T:0.30
Consensus pattern (20 bp):
TGGTGCATCGATGCATGGAT
Found at i:8011879 original size:65 final size:65
Alignment explanation
Indices: 8011671--8011878 Score: 248
Period size: 65 Copynumber: 3.2 Consensus size: 65
8011661 TGCACTAAGA
* * ** *
8011671 GTGCATCGATGCATCAAGTGCATTCGATGTTTCAAAATAGCT-A-GAGTGCATCGATGCATGGCT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAATATAATTCATG-GTGCATCGATGCATGGTT
8011734 G
65 G
* *
8011735 GTGCATCGATGCATCAAATGCATTCGATGTTTTC-ATAAAATTC-TCAGTGCATCGATGCATGGT
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTCAATATAATTCAT-GGTGCATCGATGCATGGT
8011798 AT-
64 -TG
* *
8011800 GTGCATCGATGCATGAAATGCATTCGATG-TTCAATTTAATTCATGGTGCATCGATGCATGGATT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAATATAATTCATGGTGCATCGATGCATGG-TT
8011864 G
65 G
8011865 GTGCATCGATGCAT
1 GTGCATCGATGCAT
8011879 GGATTGGTGC
Statistics
Matches: 124, Mismatches: 11, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
63 3 0.02
64 56 0.45
65 64 0.52
66 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (65 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCAATATAATTCATGGTGCATCGATGCATGGTTG
Found at i:8012563 original size:14 final size:15
Alignment explanation
Indices: 8012544--8012573 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
8012534 TTCAAACATT
8012544 AAACAATCCA-AAAC
1 AAACAATCCAGAAAC
8012558 AAACAATCCAGAAAC
1 AAACAATCCAGAAAC
8012573 A
1 A
8012574 TCAAAAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.63, C:0.27, G:0.03, T:0.07
Consensus pattern (15 bp):
AAACAATCCAGAAAC
Found at i:8012936 original size:21 final size:21
Alignment explanation
Indices: 8012911--8012954 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
8012901 GAGGAGTAGG
*
8012911 AGGAGGAGCACGAGAAGAGCT
1 AGGAGCAGCACGAGAAGAGCT
* *
8012932 AGGAGCAGCTCGTGAAGAGCT
1 AGGAGCAGCACGAGAAGAGCT
8012953 AG
1 AG
8012955 CTCCCGGGGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.16, G:0.41, T:0.09
Consensus pattern (21 bp):
AGGAGCAGCACGAGAAGAGCT
Found at i:8019373 original size:46 final size:45
Alignment explanation
Indices: 8019275--8019378 Score: 120
Period size: 45 Copynumber: 2.3 Consensus size: 45
8019265 GCACTAAGAG
* * * * *
8019275 TGCATCGATTCATCAAGTGCATTCGATGTTTCAAAATAGCCAGAG
1 TGCATCGATGCATCAAATGCATTCAATGTTTCAAAATAGCCACAA
* *
8019320 TGCATCGATGCATCAAATGCATTCAATGTTTTCATAAA-ATCCTCAA
1 TGCATCGATGCATCAAATGCATTCAATG-TTTCA-AAATAGCCACAA
8019366 TGCATCGATGCAT
1 TGCATCGATGCAT
8019379 GGTATGTGCA
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
45 25 0.50
46 22 0.44
47 3 0.06
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (45 bp):
TGCATCGATGCATCAAATGCATTCAATGTTTCAAAATAGCCACAA
Found at i:8022361 original size:32 final size:33
Alignment explanation
Indices: 8022306--8022419 Score: 151
Period size: 32 Copynumber: 3.4 Consensus size: 33
8022296 CACCCTAAAT
* *
8022306 CCGAGCCCGACCCAAATATCACACTTAAAAAAC
1 CCGACCCCGACCCGAATATCACACTTAAAAAAC
*
8022339 CCGA-CCCGGCCCGAATATCACACTTAAAAAAAC
1 CCGACCCCGACCCGAATATCACACTT-AAAAAAC
8022372 CCGACCGACTCGACCCGAATATCACACTTAAAAAAC
1 CCGACC--C-CGACCCGAATATCACACTTAAAAAAC
8022408 CCGA-CCCGACCC
1 CCGACCCCGACCC
8022420 AAACAAAATA
Statistics
Matches: 73, Mismatches: 3, Indels: 11
0.84 0.03 0.13
Matches are distributed among these distances:
32 25 0.34
33 16 0.22
34 1 0.01
35 1 0.01
36 12 0.16
37 18 0.25
ACGTcount: A:0.38, C:0.39, G:0.11, T:0.11
Consensus pattern (33 bp):
CCGACCCCGACCCGAATATCACACTTAAAAAAC
Found at i:8022380 original size:37 final size:36
Alignment explanation
Indices: 8022306--8022419 Score: 146
Period size: 37 Copynumber: 3.2 Consensus size: 36
8022296 CACCCTAAAT
*
8022306 CCGAGCCCGACCCAAATATCACACTTAAAAAA--C--
1 CCGA-CCCGACCCGAATATCACACTTAAAAAACCCGA
*
8022339 CCGACCCGGCCCGAATATCACACTTAAAAAAACCCGA
1 CCGACCCGACCCGAATATCACACTT-AAAAAACCCGA
*
8022376 CCGACTCGACCCGAATATCACACTTAAAAAACCCGA
1 CCGACCCGACCCGAATATCACACTTAAAAAACCCGA
8022412 CCCGACCC
1 -CCGACCC
8022420 AAACAAAATA
Statistics
Matches: 70, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
32 19 0.27
33 10 0.14
35 1 0.01
36 11 0.16
37 29 0.41
ACGTcount: A:0.38, C:0.39, G:0.11, T:0.11
Consensus pattern (36 bp):
CCGACCCGACCCGAATATCACACTTAAAAAACCCGA
Found at i:8025961 original size:37 final size:39
Alignment explanation
Indices: 8025883--8025962 Score: 96
Period size: 39 Copynumber: 2.1 Consensus size: 39
8025873 AACAAGTTAG
* *
8025883 AAAATATTTATATATTTTCTTTAAGAAATTTAAATTCAT
1 AAAATATTTATATATTTTCTTTAAGAAATTGAAAATCAT
8025922 AAAAT-TTATATATATTTT-TTTACA-AAATTGAAAAT-AT
1 AAAATATT-TATATATTTTCTTTA-AGAAATTGAAAATCAT
8025959 AAAA
1 AAAA
8025963 AGGTTTAATG
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
37 6 0.16
38 15 0.41
39 16 0.43
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.45
Consensus pattern (39 bp):
AAAATATTTATATATTTTCTTTAAGAAATTGAAAATCAT
Found at i:8027275 original size:114 final size:114
Alignment explanation
Indices: 8027053--8027898 Score: 675
Period size: 114 Copynumber: 7.5 Consensus size: 114
8027043 CTGGAACAAT
* ** * * * * * *
8027053 AATCTTAACTATTAACGT-CTTTTCTTTACATTGAAATATCACCTCATATTAGAATTTTCTTATT
1 AATCTTAACTATTCACGTCCTTTTCTTTGTAGTGAAACATCACCTCATATCATAAATTTCTTAAT
* *** *
8027117 ACTAAAAGAAAATGATGATTCATGACAATAATAATTTTAAATGACAAAG
66 ACTACAAGAAAATGATGATTTGGGATAATAATAATTTTAAATGACAAAG
* * *
8027166 AATCCTAACTATTCACGTCATTTTCTTTGTAGTGAAACATCACCTTATATCATAAATTTCTTAAT
1 AATCTTAACTATTCACGTCCTTTTCTTTGTAGTGAAACATCACCTCATATCATAAATTTCTTAAT
** ** * *
8027231 ACTTTAAGAAAATGATGATTTGGGACGATAATAATTTCATATGACAAAG
66 ACTACAAGAAAATGATGATTTGGGATAATAATAATTTTAAATGACAAAG
* * * * * * * *
8027280 AATGTTAAATACTCACGTCCTTTTCTTTGTAGTGAAACATCACCTCATATAAGAACTTTATTCAT
1 AATCTTAACTATTCACGTCCTTTTCTTTGTAGTGAAACATCACCTCATATCATAAATTTCTTAAT
* * * * *
8027345 TCTGCAAGAAAATGATGATTCAGGGTTATAATAATTTTAATTTTAAATGTCATAG
66 ACTACAAGAAAATGATGATT-TGGG--ATAATAA---TAATTTTAAATGACAAAG
* * ** ** * * * *
8027400 AATCTTAACTATTCTCATATTTTTCTTTAAAGTGAAACACCACCAT-ATATCTTAACTTTCTTCA
1 AATCTTAACTATTCACGTCCTTTTCTTTGTAGTGAAACATCACC-TCATATCATAAATTTCTTAA
* * * *
8027464 TATTACAAGAAAATGATGATTTGGGATGATAATAATTTTAAATGACAGAT
65 TACTACAAGAAAATGATGATTTGGGATAATAATAATTTTAAATGACAAAG
* * * * *
8027514 AATCTTAACTATT-ATGTCCTTTTTCTTTATAGTG-AACATCACCTAATATCATAACTTTCTTCA
1 AATCTTAACTATTCACGTCC-TTTTCTTTGTAGTGAAACATCACCTCATATCATAAATTTCTTAA
* * * *
8027577 TGCTACAAGAAAATGATGATCTAGGATAATAATAATTTCAAATGA-AAGAG
65 TACTACAAGAAAATGATGATTTGGGATAATAATAATTTTAAATGACAA-AG
* * * *
8027627 AATCTTAACTATTAACGTCCTTTTCTTTGCAGTGAAACGTCACTTCATATC----A--TC---AT
1 AATCTTAACTATTCACGTCCTTTTCTTTGTAGTGAAACATCACCTCATATCATAAATTTCTTAAT
* * * * *
8027683 ACTAAAAGAAAATGATGATATGAGACAATAATAATTTTAAATGACATAG
66 ACTACAAGAAAATGATGATTTGGGATAATAATAATTTTAAATGACAAAG
* * * * * * * * * *
8027732 AATCTTAACTATTCACATCCTTTTATGTGCAGTGAAATACCACCTCAAATTA-AAACTTCTTTAT
1 AATCTTAACTATTCACGTCCTTTTCTTTGTAGTGAAACATCACCTCATATCATAAATTTC-TTAA
* * * * * * *
8027796 TATTGCAA-AAAAAGATGGTTCGGGATGATAATCATTTTAAATGACAAAG
65 TACTACAAGAAAATGATGATTTGGGATAATAATAATTTTAAATGACAAAG
* *
8027845 AATCTTAAC-ATTTCACGTCTTTTTCTTTGTAGT-ACAACATCACCTCAAATCATA
1 AATCTTAACTA-TTCACGTCCTTTTCTTTGTAGTGA-AACATCACCTCATATCATA
8027899 TGTTGATTAA
Statistics
Matches: 582, Mismatches: 125, Indels: 51
0.77 0.16 0.07
Matches are distributed among these distances:
105 82 0.14
106 1 0.00
108 3 0.01
110 2 0.00
112 4 0.01
113 179 0.31
114 213 0.37
115 3 0.01
117 11 0.02
119 3 0.01
120 80 0.14
121 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.37
Consensus pattern (114 bp):
AATCTTAACTATTCACGTCCTTTTCTTTGTAGTGAAACATCACCTCATATCATAAATTTCTTAAT
ACTACAAGAAAATGATGATTTGGGATAATAATAATTTTAAATGACAAAG
Found at i:8027482 original size:234 final size:233
Alignment explanation
Indices: 8027148--8027614 Score: 582
Period size: 234 Copynumber: 2.0 Consensus size: 233
8027138 ATGACAATAA
* ** * *
8027148 TAATTTTAAATGACAAAGAATCCTAACTATTCACGTCATTTTCTTTGTAGTGAAACATCACCTTA
1 TAATTTTAAATGACAAAGAATCCTAACTATTCACATCATTTTCTTTAAAGTGAAACACCACCATA
* *
8027213 TATCATAAATTTCTTAATACTTTAAGAAAATGATGATTTGGGACGATAATAATTTCATATGACAA
66 TATCATAAATTTCTTAATACTTCAAGAAAATGATGATTTGGGACGATAATAATTTCAAATGACAA
* * *
8027278 AGAATGTTAAATACTCACGTCC-TTTTCTTTGTAGTGAAACATCACCTCATATAAGAACTTTATT
131 AGAATCTTAAATA-TCACGTCCTTTTTCTTTATAGTG-AACATCACCTAATATAAGAACTTTATT
* * * *
8027342 CATTCTGCAAGAAAATGATGAT-TCAGGGTTATAATAATTT
194 CATGCTACAAGAAAATGATGATCT-AGGATAATAATAATTT
* * * *
8027382 TAATTTTAAATGTCATAGAATCTTAACTATTCTCAT-ATTTTTCTTTAAAGTGAAACACCACCAT
1 TAATTTTAAATGACAAAGAATCCTAACTATTCACATCA-TTTTCTTTAAAGTGAAACACCACCAT
* * * * *
8027446 ATATCTTAACTTTCTTCATA-TTACAAGAAAATGATGATTTGGGATGATAATAATTTTAAATGAC
65 ATATCATAAATTTCTTAATACTT-CAAGAAAATGATGATTTGGGACGATAATAATTTCAAATGAC
* * * * * * * *
8027510 AGATAATCTTAACTATTATGTCCTTTTTCTTTATAGTGAACATCACCTAATATCATAACTTTCTT
129 AAAGAATCTTAAATATCACGTCCTTTTTCTTTATAGTGAACATCACCTAATATAAGAACTTTATT
8027575 CATGCTACAAGAAAATGATGATCTAGGATAATAATAATTT
194 CATGCTACAAGAAAATGATGATCTAGGATAATAATAATTT
8027615 CAAATGAAAG
Statistics
Matches: 198, Mismatches: 31, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
233 66 0.33
234 132 0.67
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (233 bp):
TAATTTTAAATGACAAAGAATCCTAACTATTCACATCATTTTCTTTAAAGTGAAACACCACCATA
TATCATAAATTTCTTAATACTTCAAGAAAATGATGATTTGGGACGATAATAATTTCAAATGACAA
AGAATCTTAAATATCACGTCCTTTTTCTTTATAGTGAACATCACCTAATATAAGAACTTTATTCA
TGCTACAAGAAAATGATGATCTAGGATAATAATAATTT
Found at i:8027715 original size:105 final size:105
Alignment explanation
Indices: 8027574--8027768 Score: 275
Period size: 105 Copynumber: 1.9 Consensus size: 105
8027564 ATAACTTTCT
* * * *
8027574 TCATGCTACAAGAAAATGATGATCTAGGATAATAATAATTTCAAATGAAAGAGAATCTTAACTAT
1 TCATACTAAAAGAAAATGATGATATAGGACAATAATAATTTCAAATGAAAGAGAATCTTAACTAT
* * *
8027639 TAACGTCCTTTTCTTTGCAGTGAAACGTCACTTCATATCA
66 TAACATCCTTTTATGTGCAGTGAAACGTCACTTCATATCA
* * *
8027679 TCATACTAAAAGAAAATGATGATAT-GAGACAATAATAATTTTAAATGACATAGAATCTTAACTA
1 TCATACTAAAAGAAAATGATGATATAG-GACAATAATAATTTCAAATGAAAGAGAATCTTAACTA
*
8027743 TTCACATCCTTTTATGTGCAGTGAAA
65 TTAACATCCTTTTATGTGCAGTGAAA
8027769 TACCACCTCA
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
104 1 0.01
105 77 0.99
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.32
Consensus pattern (105 bp):
TCATACTAAAAGAAAATGATGATATAGGACAATAATAATTTCAAATGAAAGAGAATCTTAACTAT
TAACATCCTTTTATGTGCAGTGAAACGTCACTTCATATCA
Found at i:8028504 original size:26 final size:26
Alignment explanation
Indices: 8028474--8028526 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
8028464 GTAATTTAAA
* *
8028474 GTAATGTAGGAGTTAATGCTTGTAAT
1 GTAATATAGAAGTTAATGCTTGTAAT
8028500 GTAATATAGAAGTTAATGCTTGTAAT
1 GTAATATAGAAGTTAATGCTTGTAAT
8028526 G
1 G
8028527 ATCTAATGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.38
Consensus pattern (26 bp):
GTAATATAGAAGTTAATGCTTGTAAT
Found at i:8028907 original size:45 final size:47
Alignment explanation
Indices: 8028819--8028908 Score: 114
Period size: 45 Copynumber: 2.0 Consensus size: 47
8028809 AGTTCCCTTA
* *
8028819 TTTTTTAATTTATTAAATTTATTAAATTTCTAACAAATTTTCATATT
1 TTTTTTAATTTATTAAATCTATTAAATTTCTAACAAATATTCATATT
* *
8028866 TTTTTTAATTTA-T-AATCTCTTATAATTTCTTA-AAATATTCATA
1 TTTTTTAATTTATTAAATCTATTA-AATTTCTAACAAATATTCATA
8028909 AGTAAATTTC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
45 17 0.45
46 9 0.24
47 12 0.32
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.57
Consensus pattern (47 bp):
TTTTTTAATTTATTAAATCTATTAAATTTCTAACAAATATTCATATT
Found at i:8028935 original size:18 final size:18
Alignment explanation
Indices: 8028912--8028946 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
8028902 ATTCATAAGT
8028912 AAATTTCTTAATTTTTTA
1 AAATTTCTTAATTTTTTA
8028930 AAATTTCTTAATTTTTT
1 AAATTTCTTAATTTTTT
8028947 TATTTCTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (18 bp):
AAATTTCTTAATTTTTTA
Found at i:8028973 original size:29 final size:28
Alignment explanation
Indices: 8028935--8029010 Score: 127
Period size: 29 Copynumber: 2.7 Consensus size: 28
8028925 TTTTAAAATT
*
8028935 TCTTAATTTTTTTATTTCTAT-AAAAAA
1 TCTTTATTTTTTTATTTCTATAAAAAAA
8028962 TCTTTATTTTTTTATTTCTATAAAAAAAA
1 TCTTTATTTTTTTATTTCTAT-AAAAAAA
8028991 TCTTTATTTTTTTATTTCTA
1 TCTTTATTTTTTTATTTCTA
8029011 AAAGTCTTAT
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
27 20 0.43
29 26 0.57
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.61
Consensus pattern (28 bp):
TCTTTATTTTTTTATTTCTATAAAAAAA
Found at i:8030009 original size:3 final size:3
Alignment explanation
Indices: 8030003--8030071 Score: 138
Period size: 3 Copynumber: 23.0 Consensus size: 3
8029993 CAGCAAAAGC
8030003 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
8030051 AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA
8030072 TGGTGATTTC
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:8031254 original size:19 final size:18
Alignment explanation
Indices: 8031232--8031267 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
8031222 TATAAATTCA
8031232 TATATTAAAATTAAAATAT
1 TATATT-AAATTAAAATAT
*
8031251 TATATTAATTTAAAATA
1 TATATTAAATTAAAATA
8031268 AATATAGATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
TATATTAAATTAAAATAT
Found at i:8031273 original size:19 final size:19
Alignment explanation
Indices: 8031231--8031272 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
8031221 ATATAAATTC
8031231 ATATATTAAAATTAAAATA
1 ATATATTAAAATTAAAATA
* *
8031250 TTATATT-AATTTAAAATA
1 ATATATTAAAATTAAAATA
8031268 A-ATAT
1 ATATAT
8031273 AGATTTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 4 0.20
18 10 0.50
19 6 0.30
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
ATATATTAAAATTAAAATA
Found at i:8031797 original size:90 final size:88
Alignment explanation
Indices: 8031643--8031814 Score: 308
Period size: 90 Copynumber: 1.9 Consensus size: 88
8031633 TAACACACCA
8031643 TTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATATT
1 TTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATATT
*
8031708 TAATTAATTAGAATTTAATAATCC
66 TAATTAATT-GAAATTAATAATCC
*
8031732 TTTTATATCCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTATAT
1 TTTTATAGCCAAGTTACCCTAATCATATTAGGG-TTTTATTATTTCAAATTAATTAAATCTATAT
8031797 TTAATTAATTGAAATTAA
65 TTAATTAATTGAAATTAA
8031815 ATATTCGGGA
Statistics
Matches: 80, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
89 39 0.49
90 41 0.51
ACGTcount: A:0.38, C:0.10, G:0.06, T:0.45
Consensus pattern (88 bp):
TTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATATT
TAATTAATTGAAATTAATAATCC
Found at i:8034158 original size:20 final size:20
Alignment explanation
Indices: 8034133--8034174 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
8034123 TTCAATTAAT
*
8034133 TTTATGTTCGTTTACGTTCA
1 TTTATGTTCGATTACGTTCA
* *
8034153 TTTATGTTTGATTATGTTCA
1 TTTATGTTCGATTACGTTCA
8034173 TT
1 TT
8034175 CCTTTGTGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.17, C:0.10, G:0.14, T:0.60
Consensus pattern (20 bp):
TTTATGTTCGATTACGTTCA
Found at i:8034776 original size:102 final size:105
Alignment explanation
Indices: 8034670--8034883 Score: 238
Period size: 105 Copynumber: 2.1 Consensus size: 105
8034660 TGACCATCTA
* * *
8034670 TTCGATACAATTAT-AATATAAATT-ATAAT-AATTT-TTTTACACTAAAAAAATATTTTGTGAC
1 TTCGATACAATTATCAATAGAAATTGA-AATAAATTTAGTTGACACTAAAAAAATATTTTGTGAC
* * **
8034731 CATCAATATTGTCAGACTAAGTAGTTTTTAGTGACCAAATG
65 CACCAATATTGTCACACTAAGTAGTTTTTAGTGAAAAAATG
* * * **
8034772 TTCGATACTATTATCAATAGAAATTGAGATAAATTTAGTTGACACTGAAAGTATATTTTGTGACC
1 TTCGATACAATTATCAATAGAAATTGAAATAAATTTAGTTGACACTAAAAAAATATTTTGTGACC
* * * *
8034837 ACCAATGTTGTCACATTAAGTATTTTTTGGTGAAAAAATG
66 ACCAATATTGTCACACTAAGTAGTTTTTAGTGAAAAAATG
*
8034877 TTTGATA
1 TTCGATA
8034884 TTATTAACAA
Statistics
Matches: 91, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
102 13 0.14
103 11 0.12
104 6 0.07
105 61 0.67
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.39
Consensus pattern (105 bp):
TTCGATACAATTATCAATAGAAATTGAAATAAATTTAGTTGACACTAAAAAAATATTTTGTGACC
ACCAATATTGTCACACTAAGTAGTTTTTAGTGAAAAAATG
Found at i:8035442 original size:24 final size:26
Alignment explanation
Indices: 8035387--8035442 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
8035377 ATTAATTTTA
* *
8035387 TTTATTTTAATATATATAATATTAAT
1 TTTATTATAATATATATAATATAAAT
*
8035413 TATTATTATAATA-ATTTAAT-TAAAT
1 T-TTATTATAATATATATAATATAAAT
8035438 TTTAT
1 TTTAT
8035443 ATGATTTCTC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
24 4 0.15
25 5 0.19
26 7 0.27
27 10 0.38
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (26 bp):
TTTATTATAATATATATAATATAAAT
Found at i:8036439 original size:41 final size:42
Alignment explanation
Indices: 8036337--8036449 Score: 156
Period size: 42 Copynumber: 2.7 Consensus size: 42
8036327 TATTTTTGTT
* *
8036337 ACAAATCACCAACTATGACTAGTGACAAAAACCATTATCGTC
1 ACAAATCACCAACTAAGACTAGTGACAAAAACAATTATCGTC
* * *
8036379 ACAAATCACCAACTAAGACTAATGATAAAAATAATTATCGTC
1 ACAAATCACCAACTAAGACTAGTGACAAAAACAATTATCGTC
* *
8036421 A-TAATCACCTACTAAGACTAGTGACAAAA
1 ACAAATCACCAACTAAGACTAGTGACAAAA
8036450 TTTTTTCATC
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
41 24 0.39
42 38 0.61
ACGTcount: A:0.47, C:0.22, G:0.09, T:0.22
Consensus pattern (42 bp):
ACAAATCACCAACTAAGACTAGTGACAAAAACAATTATCGTC
Found at i:8037539 original size:35 final size:35
Alignment explanation
Indices: 8037444--8037541 Score: 94
Period size: 35 Copynumber: 2.8 Consensus size: 35
8037434 TAATAGGATA
* * * * *
8037444 ATTACTCTTTGAATATGTCAAATTAAAAGGTATTT
1 ATTACTATTTGAATATTTTAAATTAAAAGATAATT
*
8037479 ATTATCTATTT-AA-ATTTTCATATTAAAAGATAATT
1 ATTA-CTATTTGAATATTTT-AAATTAAAAGATAATT
8037514 ATATACT-TTTGAATATTTTAAATTAAAA
1 AT-TACTATTTGAATATTTTAAATTAAAA
8037542 TAATATCTAT
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
34 6 0.12
35 33 0.65
36 12 0.24
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.46
Consensus pattern (35 bp):
ATTACTATTTGAATATTTTAAATTAAAAGATAATT
Found at i:8042303 original size:22 final size:23
Alignment explanation
Indices: 8042278--8042320 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
8042268 TTAATTGGGA
*
8042278 AAACCCCA-ATTTACCATTAATG
1 AAACACCATATTTACCATTAATG
*
8042300 AAACATCATATTTACCATTAA
1 AAACACCATATTTACCATTAA
8042321 ACCAAGAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.44, C:0.23, G:0.02, T:0.30
Consensus pattern (23 bp):
AAACACCATATTTACCATTAATG
Found at i:8051007 original size:3 final size:3
Alignment explanation
Indices: 8050999--8051042 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
8050989 TGTACCCGGT
8050999 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
8051043 CTTAAATTAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8051085 original size:39 final size:40
Alignment explanation
Indices: 8051041--8051132 Score: 111
Period size: 39 Copynumber: 2.4 Consensus size: 40
8051031 ATTATTATTA
*
8051041 TTCTTAAATTATTTC-ACTC-TAACATT-AAAATTTTCTAAT
1 TTCTTAAATTATTTCTAC-CATAACATTCAAAATTCT-TAAT
* *
8051080 TTCTTAAATT-TTACTACCATAACATTCTAAATTCTTAAT
1 TTCTTAAATTATTTCTACCATAACATTCAAAATTCTTAAT
8051119 TTCTTAAATTATTT
1 TTCTTAAATTATTT
8051133 TGCATTAACA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
38 4 0.09
39 33 0.73
40 8 0.18
ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50
Consensus pattern (40 bp):
TTCTTAAATTATTTCTACCATAACATTCAAAATTCTTAAT
Found at i:8051142 original size:39 final size:39
Alignment explanation
Indices: 8051041--8051151 Score: 106
Period size: 39 Copynumber: 2.8 Consensus size: 39
8051031 ATTATTATTA
* *
8051041 TTCTTAAATTA-TTTCACTCTAACATT-AAAATTTTCTAAT
1 TTCTTAAATTATTTTCA-T-TAACATTCTAAATTCTCTAAT
*
8051080 TTCTTAAATT-TTACTACCA-TAACATTCTAAATTCT-TAAT
1 TTCTTAAATTATT--T-TCATTAACATTCTAAATTCTCTAAT
8051119 TTCTTAAATTATTTTGCATTAACATTCTAAATT
1 TTCTTAAATTATTTT-CATTAACATTCTAAATT
8051152 ATCTTCAAAT
Statistics
Matches: 60, Mismatches: 4, Indels: 16
0.75 0.05 0.20
Matches are distributed among these distances:
38 3 0.05
39 46 0.77
40 8 0.13
41 1 0.02
42 2 0.03
ACGTcount: A:0.35, C:0.15, G:0.01, T:0.49
Consensus pattern (39 bp):
TTCTTAAATTATTTTCATTAACATTCTAAATTCTCTAAT
Found at i:8052183 original size:2 final size:2
Alignment explanation
Indices: 8052171--8052205 Score: 61
Period size: 2 Copynumber: 17.0 Consensus size: 2
8052161 AGAAGTAATA
8052171 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8052206 TTCATTTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 30 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8052922 original size:13 final size:13
Alignment explanation
Indices: 8052904--8052930 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8052894 AAAATAAAAA
8052904 AAGTAAAAAGACT
1 AAGTAAAAAGACT
8052917 AAGTAAAAAGACT
1 AAGTAAAAAGACT
8052930 A
1 A
8052931 CATAATTGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.07, G:0.15, T:0.15
Consensus pattern (13 bp):
AAGTAAAAAGACT
Found at i:8058137 original size:22 final size:21
Alignment explanation
Indices: 8058093--8058134 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
8058083 ATGTGGTTAT
8058093 TACTCATTACATAACAAAAAA
1 TACTCATTACATAACAAAAAA
8058114 TACTCATTACATAACAAAAAA
1 TACTCATTACATAACAAAAAA
8058135 ATAATTACAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.57, C:0.19, G:0.00, T:0.24
Consensus pattern (21 bp):
TACTCATTACATAACAAAAAA
Found at i:8061609 original size:84 final size:79
Alignment explanation
Indices: 8061343--8061649 Score: 276
Period size: 81 Copynumber: 3.7 Consensus size: 79
8061333 CTGAATGGAA
* * *
8061343 TCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCA-TGCCTTGAGGTATGCTGCAAATGATGGTGC
1 TCGAACTCGAAGGTCTTTGGCAAATAACCCTT-ATTGCCTTGAGCTATGCTGCAAATGATGGTGC
* * *
8061407 CTATAAGCCGAATAGAG
65 CT-TGAGCTG-AGAGAG
* * * *
8061424 TCGAACTCGAAGGTCTTTGGCAAATAACCCTTCTTGTCATGAGCTATGCTGCAAATGATGGTGTA
1 TCGAACTCGAAGGTCTTTGGCAAATAACCCTTATTGCCTTGAGCTATGCTGCAAATGATGGTG-C
* *
8061489 TTTGAGCTGAGTGGAG
65 CTTGAGCTGAG-AGAG
* * * * * *
8061505 TCAAACTCGAAGGTCTTTGTTGACAGATAACCCTTATAGCCTTGAGTTATGTTGTAAATGAT-GT
1 TCGAACTCGAAGGTCTTTG--G-CAAATAACCCTTATTGCCTTGAGCTATGCTGCAAATGATGGT
*
8061569 GCCTTGGAGCTGAGCGTAG
63 GCCTT-GAGCTGAGAG-AG
* * *
8061588 TCGAACTCGAAGGTCTTTTGTTGGCAAATAACCCTTCTTGCCTTGAGCTATGTTGAAAATGA
1 TCGAACTCGAAGGTC---T-TTGGCAAATAACCCTTATTGCCTTGAGCTATGCTGCAAATGA
8061650 ACAAGTTATC
Statistics
Matches: 184, Mismatches: 30, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
80 1 0.01
81 82 0.45
82 4 0.02
83 28 0.15
84 64 0.35
85 1 0.01
86 1 0.01
87 3 0.02
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (79 bp):
TCGAACTCGAAGGTCTTTGGCAAATAACCCTTATTGCCTTGAGCTATGCTGCAAATGATGGTGCC
TTGAGCTGAGAGAG
Found at i:8061637 original size:168 final size:162
Alignment explanation
Indices: 8061330--8061649 Score: 387
Period size: 168 Copynumber: 1.9 Consensus size: 162
8061320 ATATGCCCTC
* *
8061330 GAGCTGAATGGAATCGAACTCGAAGGTCTTTGGCAGATAGCCCTTCATGCCTTGAGGTATGCTGC
1 GAGCTGAATGGAATCAAACTCGAAGGTCTTTGGCAGATAACCCTTCATGCCTTGAGGTATGCTGC
*
8061395 AAATGATGGTGCCTATAAGCCGAATAGAGTCGAACTCGAAGGTCTTTGGCAAATAACCCTTCTTG
66 AAATGATGGTGCCTATAAGCCGAAGAGAGTCGAACTCGAAGGTCTTTGGCAAATAACCCTTCTTG
* *
8061460 TCATGAGCTATGCTGCAAATGATGGTGTATTT
131 CCATGAGCTATGCTGAAAATGATGGTGTATTT
* * *
8061492 GAGCTGAGTGGAGTCAAACTCGAAGGTCTTTGTTGACAGATAACCCTT-ATAGCCTTGAGTTATG
1 GAGCTGAATGGAATCAAACTCGAAGGTCTTTG--G-CAGATAACCCTTCAT-GCCTTGAGGTATG
* * * * *
8061556 TTGTAAATGAT-GTGCCT-TGGAGCTG-AGCGTAGTCGAACTCGAAGGTCTTTTGTTGGCAAATA
62 CTGCAAATGATGGTGCCTAT-AAGCCGAAGAG-AGTCGAACTCGAAGGTC---T-TTGGCAAATA
* *
8061618 ACCCTTCTTGCCTTGAGCTATGTTGAAAATGA
121 ACCCTTCTTGCCATGAGCTATGCTGAAAATGA
8061650 ACAAGTTATC
Statistics
Matches: 133, Mismatches: 15, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
162 29 0.22
163 3 0.02
164 30 0.23
165 32 0.24
167 1 0.01
168 38 0.29
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (162 bp):
GAGCTGAATGGAATCAAACTCGAAGGTCTTTGGCAGATAACCCTTCATGCCTTGAGGTATGCTGC
AAATGATGGTGCCTATAAGCCGAAGAGAGTCGAACTCGAAGGTCTTTGGCAAATAACCCTTCTTG
CCATGAGCTATGCTGAAAATGATGGTGTATTT
Found at i:8061859 original size:124 final size:124
Alignment explanation
Indices: 8061694--8061940 Score: 406
Period size: 124 Copynumber: 2.0 Consensus size: 124
8061684 GATGACATTG
* * *
8061694 CTGGTGGACACGATTCCCTTCGTCGTGAAGTTGAAACCATGGATGGCCCCTTCGTTGTGAAGTTA
1 CTGGTGGACACGATCCCCTTCGTCGTGAAGTTGAAACCATGGATGGCCCATTCATTGTGAAGTTA
8061759 AACCATGAATTGGATATCCTTCGTCATGAAGTTGAAATCCAATCTAAAGATGAATGTTA
66 AACCATGAATTGGATATCCTTCGTCATGAAGTTGAAATCCAATCTAAAGATGAATGTTA
*
8061818 CTGGT-GAGCACGATCCCCTTCGTCGTGAAGTTGAAACCATGGATGGCTCATTCATTGTGAAGTT
1 CTGGTGGA-CACGATCCCCTTCGTCGTGAAGTTGAAACCATGGATGGCCCATTCATTGTGAAGTT
* * * *
8061882 GAGCCTTGAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAATCTAAAGATGAATGTT
65 AAACCATGAATTGGATATCCTTCGTCATGAAGTTGAAATCCAATCTAAAGATGAATGTT
8061941 GCTTCGAGTC
Statistics
Matches: 114, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
123 2 0.02
124 112 0.98
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.30
Consensus pattern (124 bp):
CTGGTGGACACGATCCCCTTCGTCGTGAAGTTGAAACCATGGATGGCCCATTCATTGTGAAGTTA
AACCATGAATTGGATATCCTTCGTCATGAAGTTGAAATCCAATCTAAAGATGAATGTTA
Found at i:8062289 original size:240 final size:242
Alignment explanation
Indices: 8061836--8062302 Score: 668
Period size: 240 Copynumber: 1.9 Consensus size: 242
8061826 CACGATCCCC
* * *
8061836 TTCGTCGTGAAGTTGAAACCATGGATGGCTCATTCATTGTGAAGTTGAGCCTTGAATTGGATATC
1 TTCGTCGTGAAGTTGAAACCATGGATGACCCATTCATTGTGAAGTTGAGCCTTGAATTGAATATC
* * *
8061901 CTTCGTCGTGAAGTTGAAATCCAATCTAAAGATGAATGTTGCTTCGAGTCCAATATCCTTCGCCG
66 CTTCGTCGTGAAGTTGAAATCCAAGCT----ATG-ATATTGCTTCGAGTCCAATATCCTTCACCG
* *
8061966 TGAAGTTGAAATTGGCTCTGAATGAAACTGGGAAGCCCCTTCGCCGTGAAGTTGAGATTTGAATT
126 TGAAGTTGAAATTGACTCTGAATGAAACTGGGAAGCCCCTTCGCCGTGAAGTTGAGATCTGAATT
* *
8062031 GGATATCCTTCATCGTGAAGTTGAAATCCAATATAGAGTTGGCACGATATCA
191 AGATATCATTCATCGTGAAGTTGAAATCCAATATAGAGTTGGCACGATATCA
* * * * *
8062083 TTCGTTGTGAAGTTGAAATCATGGATGACCCATTCGTTGTGAAGTTTAGCCTTGACTTGAATATC
1 TTCGTCGTGAAGTTGAAACCATGGATGACCCATTCATTGTGAAGTTGAGCCTTGAATTGAATATC
* * *
8062148 CTTCGTCGTGAAGTTGAAATCTAAGCT-TG-TATTGTTTCGAGTCCAATATCCTTCATCGTGAAG
66 CTTCGTCGTGAAGTTGAAATCCAAGCTATGATATTGCTTCGAGTCCAATATCCTTCACCGTGAAG
* * * *
8062211 TTGAAATTGACTTTTAATGAAACTGGGAAGCCCCTTCGTCGTGAAGTTGAGCTCTGAATTAGATA
131 TTGAAATTGACTCTGAATGAAACTGGGAAGCCCCTTCGCCGTGAAGTTGAGATCTGAATTAGATA
*
8062276 TCATTCGTCGTGAAGTTGAAATCCAAT
196 TCATTCATCGTGAAGTTGAAATCCAAT
8062303 CTTGTGTAGA
Statistics
Matches: 197, Mismatches: 23, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
240 113 0.57
242 2 0.01
247 82 0.42
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (242 bp):
TTCGTCGTGAAGTTGAAACCATGGATGACCCATTCATTGTGAAGTTGAGCCTTGAATTGAATATC
CTTCGTCGTGAAGTTGAAATCCAAGCTATGATATTGCTTCGAGTCCAATATCCTTCACCGTGAAG
TTGAAATTGACTCTGAATGAAACTGGGAAGCCCCTTCGCCGTGAAGTTGAGATCTGAATTAGATA
TCATTCATCGTGAAGTTGAAATCCAATATAGAGTTGGCACGATATCA
Found at i:8063758 original size:95 final size:94
Alignment explanation
Indices: 8063561--8063823 Score: 357
Period size: 95 Copynumber: 2.7 Consensus size: 94
8063551 GGCTACCTGA
* * * * *
8063561 ATCCATAAAGCCGGGGCGCTTAACCAATTGCTCTAGAGGGATAACTCAATATCATTATATAGATA
1 ATCCATAAAGCCGGGGCGTTTAACCAATTGTTCTAGAGGGACAACTC-A-AGC-TT-TATTGATA
8063626 TTATAATCACCTTTATCAGGCTAGCTGAATATT
62 TTATAATCACCTTTATCAGGCTAGCTGAATATT
* *
8063659 ATCCATAAAGTCGGGGCGTTTAACCAATTGTTCTAGTGGGACAACTCAAGCTTTATTGTATATTA
1 ATCCATAAAGCCGGGGCGTTTAACCAATTGTTCTAGAGGGACAACTCAAGCTTTATTG-ATATTA
*
8063724 TAATCACCTTTATCAGGCTAGCTGAATCTT
65 TAATCACCTTTATCAGGCTAGCTGAATATT
* *
8063754 ATCCATAAAGCCGGGGCATTTAACCAACTGCTT-TAGAGGGACAACTCAAGCTTTATTGCATATA
1 ATCCATAAAGCCGGGGCGTTTAACCAATTG-TTCTAGAGGGACAACTCAAGCTTTATTG-ATAT-
8063818 TATAAT
63 TATAAT
8063824 ATTATAATCT
Statistics
Matches: 149, Mismatches: 13, Indels: 8
0.88 0.08 0.05
Matches are distributed among these distances:
94 4 0.03
95 92 0.62
96 10 0.07
97 1 0.01
98 42 0.28
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (94 bp):
ATCCATAAAGCCGGGGCGTTTAACCAATTGTTCTAGAGGGACAACTCAAGCTTTATTGATATTAT
AATCACCTTTATCAGGCTAGCTGAATATT
Found at i:8065510 original size:21 final size:21
Alignment explanation
Indices: 8065485--8065531 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
8065475 GTTCTAAAAA
8065485 GGTACTCAAGTTCTCCTTGCT
1 GGTACTCAAGTTCTCCTTGCT
*
8065506 GGTACTCGAGTTCTCCTTGCT
1 GGTACTCAAGTTCTCCTTGCT
8065527 GGTAC
1 GGTAC
8065532 CCCCTTGGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.13, C:0.28, G:0.23, T:0.36
Consensus pattern (21 bp):
GGTACTCAAGTTCTCCTTGCT
Found at i:8066202 original size:12 final size:12
Alignment explanation
Indices: 8066185--8066211 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
8066175 TTTATTGCGA
8066185 AAATTAAAATTT
1 AAATTAAAATTT
8066197 AAATTAAAATTT
1 AAATTAAAATTT
8066209 AAA
1 AAA
8066212 GATTCAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (12 bp):
AAATTAAAATTT
Found at i:8066293 original size:11 final size:11
Alignment explanation
Indices: 8066277--8066301 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
8066267 AATATTAGAT
8066277 AATAAATAATA
1 AATAAATAATA
8066288 AATAAATAATA
1 AATAAATAATA
8066299 AAT
1 AAT
8066302 TAATTAAAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
AATAAATAATA
Found at i:8066329 original size:5 final size:5
Alignment explanation
Indices: 8066319--8066360 Score: 54
Period size: 5 Copynumber: 9.0 Consensus size: 5
8066309 AGGGAAAAAT
*
8066319 AATAA AATAA AAT-A AA-AA AATAA AAAAA AATAA AA-AA AATAA
1 AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA
8066361 GTAAAGTAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
4 10 0.31
5 22 0.69
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (5 bp):
AATAA
Found at i:8066332 original size:13 final size:13
Alignment explanation
Indices: 8066314--8066365 Score: 52
Period size: 13 Copynumber: 3.8 Consensus size: 13
8066304 ATTAAAGGGA
8066314 AAAATAATAAAAT
1 AAAATAATAAAAT
*
8066327 AAAATAAAAAAAT
1 AAAATAATAAAAT
*
8066340 AAAAAAAAATAAAA-
1 --AAAATAATAAAAT
8066354 AAAATAAGTAAA
1 AAAATAA-TAAA
8066366 GTAGAGTGAC
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
12 6 0.19
13 16 0.50
15 10 0.31
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.15
Consensus pattern (13 bp):
AAAATAATAAAAT
Found at i:8066334 original size:10 final size:9
Alignment explanation
Indices: 8066313--8066360 Score: 62
Period size: 9 Copynumber: 5.2 Consensus size: 9
8066303 AATTAAAGGG
*
8066313 AAAAATAAT
1 AAAAAAAAT
8066322 AAAATAAAAT
1 AAAA-AAAAT
8066332 -AAAAAAAT
1 AAAAAAAAT
8066340 AAAAAAAAAT
1 -AAAAAAAAT
8066350 AAAAAAAAT
1 AAAAAAAAT
8066359 AA
1 AA
8066361 GTAAAGTAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
8 5 0.14
9 18 0.51
10 12 0.34
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:8066340 original size:18 final size:18
Alignment explanation
Indices: 8066313--8066356 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
8066303 AATTAAAGGG
*
8066313 AAAAATAATAAAATAAAAT
1 AAAAA-AATAAAAAAAAAT
8066332 AAAAAAATAAAAAAAAAT
1 AAAAAAATAAAAAAAAAT
8066350 AAAAAAA
1 AAAAAAA
8066357 ATAAGTAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 19 0.79
19 5 0.21
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (18 bp):
AAAAAAATAAAAAAAAAT
Found at i:8072160 original size:21 final size:21
Alignment explanation
Indices: 8072134--8072175 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
8072124 GAGCTTGAGG
*
8072134 GGTTTCACAA-TTTGGGGATTT
1 GGTTTCA-AATTTTAGGGATTT
8072155 GGTTTCAAATTTTAGGGATTT
1 GGTTTCAAATTTTAGGGATTT
8072176 AAAATCCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.21, C:0.07, G:0.26, T:0.45
Consensus pattern (21 bp):
GGTTTCAAATTTTAGGGATTT
Found at i:8082211 original size:34 final size:34
Alignment explanation
Indices: 8082168--8082249 Score: 121
Period size: 34 Copynumber: 2.4 Consensus size: 34
8082158 CCATGGTAAG
8082168 GGTATCGATACCAGGAAACATC-AAATCTAAAATC
1 GGTATCGATACCAGGAAACATCGAAAT-TAAAATC
* *
8082202 GGTATCGATACCAGGAAACATCGAAGTTAAAATT
1 GGTATCGATACCAGGAAACATCGAAATTAAAATC
*
8082236 GGTATGGATACCAG
1 GGTATCGATACCAG
8082250 AATGGGATAT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
34 41 0.93
35 3 0.07
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.22
Consensus pattern (34 bp):
GGTATCGATACCAGGAAACATCGAAATTAAAATC
Found at i:8082730 original size:26 final size:25
Alignment explanation
Indices: 8082701--8082976 Score: 205
Period size: 26 Copynumber: 11.6 Consensus size: 25
8082691 ATACATAAAG
8082701 GCATGAAAGGATGCCATAATTAAAAT
1 GCATGAAAGGATGCC-TAATTAAAAT
* *
8082727 GCATGAAAGGAT---TCATT--AAG
1 GCATGAAAGGATGCCTAATTAAAAT
*
8082747 GTATGAAAGGATGCCATAATTAAAAT
1 GCATGAAAGGATGCC-TAATTAAAAT
** *
8082773 GCATGAAATTATG-C--ATT--AAG
1 GCATGAAAGGATGCCTAATTAAAAT
**
8082793 GCATGAAAGGATGTGGTAATTAAAAT
1 GCATGAAAGGATG-CCTAATTAAAAT
*
8082819 GCATGAAAGGATGCGGTAATTAAAAT
1 GCATGAAAGGATGC-CTAATTAAAAT
* *
8082845 GCATGAAAGGATGCGGTAAATAAAAT
1 GCATGAAAGGATGC-CTAATTAAAAT
*
8082871 GCATGAAAGGATG-C--ATT--AAG
1 GCATGAAAGGATGCCTAATTAAAAT
8082891 GCATGAAAGGATGCCATAATTAAAAT
1 GCATGAAAGGATGCC-TAATTAAAAT
* *
8082917 GCATGAAATGATG-C--ATT--AAG
1 GCATGAAAGGATGCCTAATTAAAAT
*
8082937 GCATGAAAGGATGCCATGATTAAAAT
1 GCATGAAAGGATGCC-TAATTAAAAT
*
8082963 GCATGAAATGATGC
1 GCATGAAAGGATGC
8082977 ATTATGGCAT
Statistics
Matches: 201, Mismatches: 24, Indels: 50
0.73 0.09 0.18
Matches are distributed among these distances:
20 55 0.27
21 2 0.01
22 12 0.06
24 13 0.06
25 2 0.01
26 117 0.58
ACGTcount: A:0.43, C:0.09, G:0.24, T:0.24
Consensus pattern (25 bp):
GCATGAAAGGATGCCTAATTAAAAT
Found at i:8082753 original size:46 final size:46
Alignment explanation
Indices: 8082675--8083008 Score: 427
Period size: 46 Copynumber: 7.2 Consensus size: 46
8082665 TTAGAGTATG
* * *
8082675 TAAAATGCATGCAAGGATACATAAAGGCATGAAAGGATGCCATAAT
1 TAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAT
* *
8082721 TAAAATGCATGAAAGGATTCATTAAGGTATGAAAGGATGCCATAAT
1 TAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAT
** ***
8082767 TAAAATGCATGAAATTATGCATTAAGGCATGAAAGGATGTGGTAAT
1 TAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAT
* ** *
8082813 TAAAATGCATGAAAGGATGCGGTAATTAAAATGCATGAAAGGATGCGGTAAA
1 TAAAATGCATGAAAGGATGC----ATT--AAGGCATGAAAGGATGCCATAAT
8082865 TAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAT
1 TAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAT
* *
8082911 TAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGCCATGAT
1 TAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAT
* * *
8082957 TAAAATGCATGAAATGATGCATTATGGCATGAATGG-TGCCATAAT
1 TAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAT
*
8083002 TTAAATG
1 TAAAATG
8083009 ATAAATAGAT
Statistics
Matches: 256, Mismatches: 26, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
45 14 0.05
46 196 0.77
48 3 0.01
50 3 0.01
52 40 0.16
ACGTcount: A:0.43, C:0.10, G:0.23, T:0.25
Consensus pattern (46 bp):
TAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAT
Found at i:8082825 original size:72 final size:71
Alignment explanation
Indices: 8082749--8082976 Score: 241
Period size: 72 Copynumber: 3.2 Consensus size: 71
8082739 TCATTAAGGT
*
8082749 ATGAAAGGATGCCATAATTAAAATGCATGAAATTATGCATTAAGGCATGAAAGGATGTGGTAATT
1 ATGAAAGGATGCCATAATTAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGT-GTAATT
8082814 AAAATGC
65 AAAATGC
** * * *
8082821 ATGAAAGGATGCGGTAATTAAAATGCATGAAAGGATGCGGTAAATAAAATGCATGAAAGGA--TG
1 ATGAAAGGATGCCATAATTAAAATGCATGAAATGATGC-----AT-TAAGGCATGAAAGGATGTG
* *
8082884 -CATT--AAGGC
60 TAATTAAAATGC
** *
8082893 ATGAAAGGATGCCATAATTAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGCCATGATT
1 ATGAAAGGATGCCATAATTAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATG-TGTAATT
8082958 AAAATGC
65 AAAATGC
*
8082965 ATGAAATGATGC
1 ATGAAAGGATGC
8082977 ATTATGGCAT
Statistics
Matches: 126, Mismatches: 18, Indels: 24
0.75 0.11 0.14
Matches are distributed among these distances:
66 13 0.10
67 2 0.02
70 3 0.02
72 88 0.70
74 3 0.02
75 1 0.01
76 1 0.01
77 2 0.02
78 13 0.10
ACGTcount: A:0.43, C:0.09, G:0.24, T:0.24
Consensus pattern (71 bp):
ATGAAAGGATGCCATAATTAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGTGTAATTA
AAATGC
Found at i:8082896 original size:20 final size:20
Alignment explanation
Indices: 8082871--8082950 Score: 88
Period size: 20 Copynumber: 3.7 Consensus size: 20
8082861 TAAATAAAAT
8082871 GCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
*
8082891 GCATGAAAGGATGCCATAATTAAAAT
1 GCATGAAAGGATG-C---ATT--AAG
*
8082917 GCATGAAATGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
8082937 GCATGAAAGGATGC
1 GCATGAAAGGATGC
8082951 CATGATTAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
20 28 0.56
21 1 0.02
22 3 0.06
24 3 0.06
25 1 0.02
26 14 0.28
ACGTcount: A:0.41, C:0.11, G:0.26, T:0.21
Consensus pattern (20 bp):
GCATGAAAGGATGCATTAAG
Found at i:8082961 original size:144 final size:144
Alignment explanation
Indices: 8082701--8082976 Score: 453
Period size: 144 Copynumber: 1.9 Consensus size: 144
8082691 ATACATAAAG
* * *
8082701 GCATGAAAGGATGCCATAATTAAAATGCATGAAAGGATTCATTAAGGTATGAAAGGATGCCATAA
1 GCATGAAAGGATGCCATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
* ***
8082766 TTAAAATGCATGAAATTATGCATTAAGGCATGAAAGGATGTGGTAATTAAAATGCATGAAAGGAT
66 TTAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGCCATAATTAAAATGCATGAAAGGAT
8082831 GCGGTAATTAAAAT
131 GCGGTAATTAAAAT
**
8082845 GCATGAAAGGATGCGGTAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
1 GCATGAAAGGATGCCATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
* *
8082910 TTAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGCCATGATTAAAATGCATGAAATGAT
66 TTAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGCCATAATTAAAATGCATGAAAGGAT
8082975 GC
131 GC
8082977 ATTATGGCAT
Statistics
Matches: 121, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
144 121 1.00
ACGTcount: A:0.43, C:0.09, G:0.24, T:0.24
Consensus pattern (144 bp):
GCATGAAAGGATGCCATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
TTAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGCCATAATTAAAATGCATGAAAGGAT
GCGGTAATTAAAAT
Found at i:8082988 original size:20 final size:20
Alignment explanation
Indices: 8082917--8082989 Score: 58
Period size: 20 Copynumber: 3.4 Consensus size: 20
8082907 TAATTAAAAT
*
8082917 GCATGAAATGATGCATTAAG
1 GCATGAAATGATGCATTATG
*
8082937 GCATGAAAGGATGCCATGATTAAAAT-
1 GCATGAAATGATG-C---ATT---ATG
8082963 GCATGAAATGATGCATTATG
1 GCATGAAATGATGCATTATG
8082983 GCATGAA
1 GCATGAA
8082990 TGGTGCCATA
Statistics
Matches: 42, Mismatches: 3, Indels: 16
0.69 0.05 0.26
Matches are distributed among these distances:
19 2 0.05
20 19 0.45
21 1 0.02
22 3 0.07
24 3 0.07
25 1 0.02
26 12 0.29
27 1 0.02
ACGTcount: A:0.40, C:0.11, G:0.25, T:0.25
Consensus pattern (20 bp):
GCATGAAATGATGCATTATG
Found at i:8088584 original size:75 final size:74
Alignment explanation
Indices: 8088481--8088634 Score: 204
Period size: 75 Copynumber: 2.1 Consensus size: 74
8088471 CTATGAAGTA
* *
8088481 GTATCGATACCATGGTAAAGGTTATCGATACCAGGCAACATCGAA-TCTAAAATCGGTATCGATA
1 GTATCGATACCATAGTAAAGGTTATCGATACCAGGAAACATCGAAGT-TAAAATCGGTATCGATA
* *
8088545 TCGTAAGGGG
65 CCGGAAGGGG
* *
8088555 GTATCGATACCATAG-AAGGGTAGTATCGATACCAGGAAACATCGAAGTTAAAATTGGTATCGAT
1 GTATCGATACCATAGTAAAGGT--TATCGATACCAGGAAACATCGAAGTTAAAATCGGTATCGAT
*
8088619 ACCGGAATGGG
64 ACCGGAAGGGG
8088630 GTATC
1 GTATC
8088635 AGTATCATAT
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
73 5 0.07
74 14 0.20
75 50 0.71
76 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.24
Consensus pattern (74 bp):
GTATCGATACCATAGTAAAGGTTATCGATACCAGGAAACATCGAAGTTAAAATCGGTATCGATAC
CGGAAGGGG
Found at i:8089108 original size:46 final size:46
Alignment explanation
Indices: 8089055--8089183 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
8089045 TATGTAAAAT
*
8089055 GCATGAAAGGATGCCAAAATTAAAATGCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCCATAATTAAAATGCATGAAAGGATGCATTAAG
* * *
8089101 GCATGAAAGGATACCATTATTAAAATGCATGAAATGATGCATTAAG
1 GCATGAAAGGATGCCATAATTAAAATGCATGAAAGGATGCATTAAG
*
8089147 GCATGAAAGGATGCCATAATTAAAATTCATGAAAGGA
1 GCATGAAAGGATGCCATAATTAAAATGCATGAAAGGA
8089184 AGCCATAATT
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.45, C:0.11, G:0.22, T:0.22
Consensus pattern (46 bp):
GCATGAAAGGATGCCATAATTAAAATGCATGAAAGGATGCATTAAG
Found at i:8089178 original size:72 final size:72
Alignment explanation
Indices: 8089101--8089252 Score: 225
Period size: 72 Copynumber: 2.1 Consensus size: 72
8089091 ATGCATTAAG
* * *
8089101 GCATGAAAGGATA-CCATTATTAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGCCATA
1 GCATGAAAGGA-AGCCATAATTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGACATA
*
8089165 ATTAAAAT
65 ATAAAAAT
* * *
8089173 TCATGAAAGGAAGCCATAATTAAAATTCATGAAAGGATGCATTAAGGCATGAAAGGATTACATAA
1 GCATGAAAGGAAGCCATAATTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGACATAA
8089238 TAAAAAT
66 TAAAAAT
8089245 GCATGAAA
1 GCATGAAA
8089253 TGATGCATTA
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
71 1 0.01
72 70 0.99
ACGTcount: A:0.47, C:0.11, G:0.19, T:0.24
Consensus pattern (72 bp):
GCATGAAAGGAAGCCATAATTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGACATAA
TAAAAAT
Found at i:8089224 original size:46 final size:46
Alignment explanation
Indices: 8089174--8089331 Score: 226
Period size: 46 Copynumber: 3.4 Consensus size: 46
8089164 AATTAAAATT
* * *
8089174 CATGAAAGGAAGCCATAATTAAAATTCATGAAAGGATGCATTAAGG
1 CATGAAAGGATGCCATAATTAAAATGCATGAAAAGATGCATTAAGG
** * *
8089220 CATGAAAGGATTACATAATAAAAATGCATGAAATGATGCATTAAGG
1 CATGAAAGGATGCCATAATTAAAATGCATGAAAAGATGCATTAAGG
* *
8089266 CATGAAAGGATGCCATGATTAAAATGCATGAAAAGATGCATTAGGG
1 CATGAAAGGATGCCATAATTAAAATGCATGAAAAGATGCATTAAGG
*
8089312 CATGAATGGATGCCATAATT
1 CATGAAAGGATGCCATAATT
8089332 TAAAGATACA
Statistics
Matches: 98, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 98 1.00
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.23
Consensus pattern (46 bp):
CATGAAAGGATGCCATAATTAAAATGCATGAAAAGATGCATTAAGG
Found at i:8089257 original size:118 final size:118
Alignment explanation
Indices: 8089049--8089298 Score: 421
Period size: 118 Copynumber: 2.1 Consensus size: 118
8089039 TTAGAGTATG
*
8089049 TAAAATGCATGAAAGGATGCCAAAATTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATA
1 TAAAATGCATGAAAGGAAGCCAAAATTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATA
* *
8089114 CCATTATTAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGCCATAAT
66 CCATAATAAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGCCATAAT
* * *
8089167 TAAAATTCATGAAAGGAAGCCATAATTAAAATTCATGAAAGGATGCATTAAGGCATGAAAGGATT
1 TAAAATGCATGAAAGGAAGCCAAAATTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGA-T
*
8089232 A-CATAATAAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGCCATGAT
65 ACCATAATAAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGCCATAAT
8089285 TAAAATGCATGAAA
1 TAAAATGCATGAAA
8089299 AGATGCATTA
Statistics
Matches: 123, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
118 121 0.98
119 2 0.02
ACGTcount: A:0.46, C:0.10, G:0.20, T:0.23
Consensus pattern (118 bp):
TAAAATGCATGAAAGGAAGCCAAAATTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATA
CCATAATAAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGCCATAAT
Found at i:8091974 original size:16 final size:16
Alignment explanation
Indices: 8091933--8091974 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
8091923 AAAAGATATT
8091933 TAAATAATAA-TAAAAA
1 TAAATAA-AAGTAAAAA
* *
8091949 TGAATTAAAGTAAAAA
1 TAAATAAAAGTAAAAA
8091965 TAAATAAAAG
1 TAAATAAAAG
8091975 ATTTTTAAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
15 2 0.10
16 19 0.90
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (16 bp):
TAAATAAAAGTAAAAA
Found at i:8094498 original size:17 final size:17
Alignment explanation
Indices: 8094476--8094515 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
8094466 TCAGGCGAGT
8094476 AGACTCAATCATCTAGC
1 AGACTCAATCATCTAGC
8094493 AGACTCAATCATCTAGC
1 AGACTCAATCATCTAGC
8094510 AGACTC
1 AGACTC
8094516 GGCAGAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.35, C:0.30, G:0.12, T:0.23
Consensus pattern (17 bp):
AGACTCAATCATCTAGC
Found at i:8099587 original size:33 final size:33
Alignment explanation
Indices: 8099543--8099609 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
8099533 TTTATTTTTG
* *
8099543 TCTTCTAGTGGTGGCTTCCACGTCTTGTACTTT
1 TCTTCTAGTGGTGACTTCCAAGTCTTGTACTTT
*
8099576 TCTTCTTGTGGTGACTTCCAAGTCTTGTACTTT
1 TCTTCTAGTGGTGACTTCCAAGTCTTGTACTTT
8099609 T
1 T
8099610 ATTTATTACT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.10, C:0.22, G:0.19, T:0.48
Consensus pattern (33 bp):
TCTTCTAGTGGTGACTTCCAAGTCTTGTACTTT
Found at i:8100651 original size:21 final size:21
Alignment explanation
Indices: 8100621--8100664 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
8100611 AACTCTTCAA
* *
8100621 CAGAATAAAATATTAATATTC
1 CAGAAGAAAATATTAATAATC
8100642 CAGAAGAAAATATTAATAATC
1 CAGAAGAAAATATTAATAATC
8100663 CA
1 CA
8100665 TATCCTATGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.55, C:0.11, G:0.07, T:0.27
Consensus pattern (21 bp):
CAGAAGAAAATATTAATAATC
Found at i:8118437 original size:44 final size:44
Alignment explanation
Indices: 8118388--8118608 Score: 271
Period size: 44 Copynumber: 5.0 Consensus size: 44
8118378 TTAGAGGAAG
* *
8118388 TTTCTGAAGACTCCTCTGCTGTGTACAAGGGTAAGACCTTACCA
1 TTTCTGAAGGCTCCTCTGCTGTGTGCAAGGGTAAGACCTTACCA
8118432 TTTCTGAAGGCTCCTCTGCTGTGTGCAAGGGTAAGACCTTACCA
1 TTTCTGAAGGCTCCTCTGCTGTGTGCAAGGGTAAGACCTTACCA
* * * * * *
8118476 TTTATGAATGCTCTTCTACTGTGTGCAAGGGAAAGACCTTACCG
1 TTTCTGAAGGCTCCTCTGCTGTGTGCAAGGGTAAGACCTTACCA
* * *
8118520 TTTCTGAAGGCTTCTATGCTATGTGCAAGGGTAAGACCTTACCA
1 TTTCTGAAGGCTCCTCTGCTGTGTGCAAGGGTAAGACCTTACCA
* * * * * *
8118564 TTTTTCGCAGGCTCCTCAGCTTTGTGCTTAGGGTAAGTCCTTACC
1 TTTCT-GAAGGCTCCTCTGCTGTGTGC-AAGGGTAAGACCTTACC
8118609 GCAGGCTCCT
Statistics
Matches: 150, Mismatches: 25, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
44 119 0.79
45 16 0.11
46 15 0.10
ACGTcount: A:0.22, C:0.24, G:0.23, T:0.32
Consensus pattern (44 bp):
TTTCTGAAGGCTCCTCTGCTGTGTGCAAGGGTAAGACCTTACCA
Found at i:8118636 original size:39 final size:38
Alignment explanation
Indices: 8118569--8118684 Score: 115
Period size: 39 Copynumber: 3.0 Consensus size: 38
8118559 TACCATTTTT
* *
8118569 CGCAGGCTCCTCAGCTTTGTGCTTAGGGTAAGTCCTTAC
1 CGCAGGCTCCTCA-CTTTTTGCTCAGGGTAAGTCCTTAC
* *
8118608 CGCAGGCTCCTCGAATTTTTGCTCAGGGTAAGTCTTTAC
1 CGCAGGCTCCTC-ACTTTTTGCTCAGGGTAAGTCCTTAC
* * * * * *
8118647 TGCAAGATCCTCTACTTTTTACACAAGGTAAGTCCTTA
1 CGCAGGCTCCTC-ACTTTTTGCTCAGGGTAAGTCCTTA
8118685 TTGAGTGTAC
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
39 62 0.98
40 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.33
Consensus pattern (38 bp):
CGCAGGCTCCTCACTTTTTGCTCAGGGTAAGTCCTTAC
Found at i:8121323 original size:2 final size:2
Alignment explanation
Indices: 8121312--8121343 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
8121302 ACGGAGAAAA
8121312 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8121344 CCAATCATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8121734 original size:31 final size:31
Alignment explanation
Indices: 8121696--8121755 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
8121686 GTGTTTTGTC
*
8121696 CTTTCAATGTCGTTACTGCATCCCTAAAGTG
1 CTTTCAATGTCGTTACTACATCCCTAAAGTG
8121727 CTTTCAATGTCGTTACTACATCCCTAAAG
1 CTTTCAATGTCGTTACTACATCCCTAAAG
8121756 ATAATGAGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.27, G:0.13, T:0.35
Consensus pattern (31 bp):
CTTTCAATGTCGTTACTACATCCCTAAAGTG
Found at i:8124319 original size:44 final size:44
Alignment explanation
Indices: 8124269--8124487 Score: 249
Period size: 44 Copynumber: 4.9 Consensus size: 44
8124259 TTGGAGGAAG
*
8124269 TTTCTGAAGGCTCCTCTGCTGTGTGCAAGGGTAAGACCTTACCA
1 TTTCTGAAGGCTCCTCTGCTATGTGCAAGGGTAAGACCTTACCA
* * *
8124313 TTTCTGAAGGCTCCTATGCTGTGTGCAAGGGTAAGACCTTAACA
1 TTTCTGAAGGCTCCTCTGCTATGTGCAAGGGTAAGACCTTACCA
* * * *
8124357 TTTCTAAAGGCTCCTCTGTTATGTGAAAGGGTAAGACCTTATCA
1 TTTCTGAAGGCTCCTCTGCTATGTGCAAGGGTAAGACCTTACCA
* * * * *
8124401 TTTCTAAAGGCTCATCTGTTATGTGCAAGGGTAAAACCTTACCGC
1 TTTCTGAAGGCTCCTCTGCTATGTGCAAGGGTAAGACCTTACC-A
* * * * * *
8124446 TTTCCGCAGGCTCCTCGGCTTTGTGCTTAGGGTAAGTCCTTA
1 TTTCTGAAGGCTCCTCTGCTATGTGC-AAGGGTAAGACCTTA
8124488 TTGCAAGCTC
Statistics
Matches: 150, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
44 119 0.79
45 19 0.13
46 12 0.08
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.32
Consensus pattern (44 bp):
TTTCTGAAGGCTCCTCTGCTATGTGCAAGGGTAAGACCTTACCA
Found at i:8124517 original size:39 final size:39
Alignment explanation
Indices: 8124474--8124565 Score: 112
Period size: 39 Copynumber: 2.4 Consensus size: 39
8124464 CTTTGTGCTT
* *
8124474 AGGGTAAGTCCTTATTGCAAGCTCCTCAAACTTGCGCTG
1 AGGGTAAGTCCTTACTGCAAGCTCCTCAAACTTGCGCTA
** * * **
8124513 AGGGTAAGTCCTTACTGCTGGCTTCTCAGACTTTTGCTA
1 AGGGTAAGTCCTTACTGCAAGCTCCTCAAACTTGCGCTA
8124552 AGGGTAAGTCCTTA
1 AGGGTAAGTCCTTA
8124566 GAGCAGGCTC
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.32
Consensus pattern (39 bp):
AGGGTAAGTCCTTACTGCAAGCTCCTCAAACTTGCGCTA
Found at i:8124997 original size:30 final size:28
Alignment explanation
Indices: 8124941--8124999 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 28
8124931 TGTCCCGAAA
*
8124941 ATGTTTTATATGGTATTTTGATATGTAT
1 ATGTTTTATATAGTATTTTGATATGTAT
8124969 ATGTTTTATATAGT-TTTATGAAATATGTAT
1 ATGTTTTATATAGTATTT-TG--ATATGTAT
8124999 A
1 A
8125000 CATATATGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
27 3 0.11
28 15 0.56
30 9 0.33
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (28 bp):
ATGTTTTATATAGTATTTTGATATGTAT
Found at i:8125055 original size:24 final size:24
Alignment explanation
Indices: 8124991--8125043 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
8124981 GTTTTATGAA
8124991 ATATG-TATACATATATGTTTATC
1 ATATGATATACATATATGTTTATC
8125014 ATATGATATACATATATGTTTATC
1 ATATGATATACATATATGTTTATC
8125038 ATATGA
1 ATATGA
8125044 ATCTTTTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 5 0.17
24 24 0.83
ACGTcount: A:0.38, C:0.08, G:0.09, T:0.45
Consensus pattern (24 bp):
ATATGATATACATATATGTTTATC
Found at i:8127866 original size:14 final size:14
Alignment explanation
Indices: 8127832--8127898 Score: 80
Period size: 14 Copynumber: 4.7 Consensus size: 14
8127822 CCCGACCCCA
* *
8127832 CTGAGTCAACCCGAA
1 CTGAGTCAACTCG-T
*
8127847 CTGAGTCAACTTGT
1 CTGAGTCAACTCGT
*
8127861 CTGAGTTAACTCGT
1 CTGAGTCAACTCGT
*
8127875 CTGAGTTAACTCGT
1 CTGAGTCAACTCGT
8127889 CTGAGTCAAC
1 CTGAGTCAAC
8127899 CTATTGACTT
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
14 35 0.76
15 11 0.24
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.28
Consensus pattern (14 bp):
CTGAGTCAACTCGT
Found at i:8130349 original size:22 final size:22
Alignment explanation
Indices: 8130324--8130378 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
8130314 CACACATACA
8130324 AGATTTTACTAGATCATGATCT
1 AGATTTTACTAGATCATGATCT
*
8130346 AGATTTTACTGGATCATGATCT
1 AGATTTTACTAGATCATGATCT
*
8130368 AGATATTACTA
1 AGATTTTACTA
8130379 TTTACTGTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.40
Consensus pattern (22 bp):
AGATTTTACTAGATCATGATCT
Found at i:8133279 original size:36 final size:36
Alignment explanation
Indices: 8133232--8133303 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
8133222 TTTATCTTAG
**
8133232 GTCCATAAGGAATTATCAA-CTTGATCGGTGTTGAAC
1 GTCCATAAGGAATTA-CAAGCTTGATCGAAGTTGAAC
*
8133268 GTCCATTAGGAATTACAAGCTTGATCGAAGTTGAAC
1 GTCCATAAGGAATTACAAGCTTGATCGAAGTTGAAC
8133304 TTGCAGAGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
35 3 0.09
36 29 0.91
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (36 bp):
GTCCATAAGGAATTACAAGCTTGATCGAAGTTGAAC
Found at i:8139634 original size:33 final size:33
Alignment explanation
Indices: 8139592--8139663 Score: 117
Period size: 33 Copynumber: 2.2 Consensus size: 33
8139582 ACAAAAATAA
* *
8139592 ATAAAAGTACAGTACGTGGAAGCGACCACAAGG
1 ATAAAAGTACAATACGTGGAAGCCACCACAAGG
8139625 ATAAAAGTACAATACGTGGAAGCCACCACAAGG
1 ATAAAAGTACAATACGTGGAAGCCACCACAAGG
*
8139658 AGAAAA
1 ATAAAA
8139664 AAATAGAAGC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.47, C:0.18, G:0.24, T:0.11
Consensus pattern (33 bp):
ATAAAAGTACAATACGTGGAAGCCACCACAAGG
Found at i:8149953 original size:20 final size:21
Alignment explanation
Indices: 8149928--8149980 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 21
8149918 TTGACTTTTT
8149928 GGTCAACAGTCAAAGTCAA-C
1 GGTCAACAGTCAAAGTCAATC
* *
8149948 GGTCAAC-GATCAAATTCAATG
1 GGTCAACAG-TCAAAGTCAATC
8149969 GGTCAA-AGTCAA
1 GGTCAACAGTCAA
8149981 CGAGTTGACT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
19 1 0.04
20 20 0.71
21 7 0.25
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.19
Consensus pattern (21 bp):
GGTCAACAGTCAAAGTCAATC
Found at i:8150032 original size:14 final size:15
Alignment explanation
Indices: 8149984--8150035 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 15
8149974 AAGTCAACGA
**
8149984 GTTGACTCAGA-AAG
1 GTTGACTCAGACCGG
* *
8149998 GTTTACTCAGACCGA
1 GTTGACTCAGACCGG
8150013 GTTGACTCAG-CCGG
1 GTTGACTCAGACCGG
8150027 GTTGACTCA
1 GTTGACTCA
8150036 AACTGAATTA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
14 22 0.71
15 9 0.29
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (15 bp):
GTTGACTCAGACCGG
Found at i:8152673 original size:43 final size:42
Alignment explanation
Indices: 8152585--8152681 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 42
8152575 TGGATATAGG
* * * * *
8152585 AAAAAAGCCTCTAGAAACAGTAGTAGAACGGACAACCGTTCA
1 AAAAAAACCTCTAGAAACAATAGGAGAACGGACAAACATTCA
* **
8152627 AAAAAAACCTCTAGAAACAATAGGAGAATGGGTAAACATTCGA
1 AAAAAAACCTCTAGAAACAATAGGAGAACGGACAAACATTC-A
8152670 AAAAAAA-CTCTA
1 AAAAAAACCTCTA
8152682 ACCAAGGATT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
42 38 0.83
43 8 0.17
ACGTcount: A:0.51, C:0.18, G:0.16, T:0.15
Consensus pattern (42 bp):
AAAAAAACCTCTAGAAACAATAGGAGAACGGACAAACATTCA
Found at i:8153619 original size:17 final size:17
Alignment explanation
Indices: 8153597--8153631 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
8153587 AGAGAAATTC
8153597 TATCAGTCATACCAAAT
1 TATCAGTCATACCAAAT
8153614 TATCAGTCATACCAAAT
1 TATCAGTCATACCAAAT
8153631 T
1 T
8153632 TAGACTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.23, G:0.06, T:0.31
Consensus pattern (17 bp):
TATCAGTCATACCAAAT
Found at i:8155616 original size:23 final size:23
Alignment explanation
Indices: 8155590--8155637 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
8155580 GCTCAGTGCA
8155590 GCATCATTTACTTGTGAAATGAC
1 GCATCATTTACTTGTGAAATGAC
8155613 GCATCATTTACTTGTGAAATGAC
1 GCATCATTTACTTGTGAAATGAC
8155636 GC
1 GC
8155638 GTCTTCTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (23 bp):
GCATCATTTACTTGTGAAATGAC
Found at i:8156392 original size:16 final size:16
Alignment explanation
Indices: 8156367--8156397 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8156357 ACTTGATTTG
*
8156367 TTTGGGTCAATATTCT
1 TTTGGCTCAATATTCT
8156383 TTTGGCTCAATATTC
1 TTTGGCTCAATATTC
8156398 ACTATATGGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.48
Consensus pattern (16 bp):
TTTGGCTCAATATTCT
Found at i:8158346 original size:29 final size:29
Alignment explanation
Indices: 8158246--8158389 Score: 137
Period size: 30 Copynumber: 4.9 Consensus size: 29
8158236 GGAAAAATTG
* * * *
8158246 AAACTTAAAAGACCAAAATAGTACAAACAA
1 AAACTTAAAGGACTAAAACA-TAAAAACAA
* * * *
8158276 GAATTTAAAGGACTAAAATAACAAAAACAA
1 AAACTTAAAGGACTAAAA-CATAAAAACAA
* *
8158306 AAACTTAAAAGG-CTAAAACATCAAAAATAG
1 AAACTT-AAAGGACTAAAACAT-AAAAACAA
*
8158336 AAACTTAAAGGACTAAATCATAAAAACAA
1 AAACTTAAAGGACTAAAACATAAAAACAA
*
8158365 AAACTTAAAGGACTAAATCATAAAA
1 AAACTTAAAGGACTAAAACATAAAA
8158390 TAAAAATAAA
Statistics
Matches: 94, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
29 37 0.39
30 51 0.54
31 6 0.06
ACGTcount: A:0.62, C:0.13, G:0.08, T:0.17
Consensus pattern (29 bp):
AAACTTAAAGGACTAAAACATAAAAACAA
Found at i:8158395 original size:29 final size:29
Alignment explanation
Indices: 8158270--8158389 Score: 143
Period size: 29 Copynumber: 4.1 Consensus size: 29
8158260 AAAATAGTAC
* * * *
8158270 AAACAAGAATTTAAAGGACTAAAATAACAA
1 AAACAAAAACTTAAAGGACT-AAATCATAA
*
8158300 AAACAAAAACTTAAAAGG-CTAAAACATCAA
1 AAACAAAAACTT-AAAGGACTAAATCAT-AA
* *
8158330 AAATAGAAACTTAAAGGACTAAATCATAA
1 AAACAAAAACTTAAAGGACTAAATCATAA
8158359 AAACAAAAACTTAAAGGACTAAATCATAA
1 AAACAAAAACTTAAAGGACTAAATCATAA
8158388 AA
1 AA
8158390 TAAAAATAAA
Statistics
Matches: 77, Mismatches: 10, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
29 40 0.52
30 32 0.42
31 5 0.06
ACGTcount: A:0.62, C:0.12, G:0.08, T:0.17
Consensus pattern (29 bp):
AAACAAAAACTTAAAGGACTAAATCATAA
Found at i:8161022 original size:25 final size:25
Alignment explanation
Indices: 8160994--8161062 Score: 120
Period size: 25 Copynumber: 2.7 Consensus size: 25
8160984 TTTTTCTGGA
8160994 AAGGTAAGAATTTTATTCAATTCAG
1 AAGGTAAGAATTTTATTCAATTCAG
*
8161019 AAGGTAAGAATTTTATTCAATTCCG
1 AAGGTAAGAATTTTATTCAATTCAG
8161044 AAGGTAAGAATATTTATTC
1 AAGGTAAGAAT-TTTATTC
8161063 CTGTAAGTGG
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
25 35 0.83
26 7 0.17
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (25 bp):
AAGGTAAGAATTTTATTCAATTCAG
Found at i:8161336 original size:40 final size:40
Alignment explanation
Indices: 8161281--8161361 Score: 126
Period size: 40 Copynumber: 2.0 Consensus size: 40
8161271 AAAAACAGAG
* *
8161281 AAACTTGGCCTCCAACATTCTTGCCTCCTCTGATCCCAAT
1 AAACTTGGCCTCCAACATTCTAGCCTCCTATGATCCCAAT
* *
8161321 AAACTTGGCCTCCAACCTTCTAGCCTCCTATGATTCCAAT
1 AAACTTGGCCTCCAACATTCTAGCCTCCTATGATCCCAAT
8161361 A
1 A
8161362 TTTTAAGCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.25, C:0.36, G:0.10, T:0.30
Consensus pattern (40 bp):
AAACTTGGCCTCCAACATTCTAGCCTCCTATGATCCCAAT
Found at i:8162122 original size:16 final size:17
Alignment explanation
Indices: 8162086--8162119 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
8162076 ATAGAAAATA
8162086 TAATTTACTATTATTTT
1 TAATTTACTATTATTTT
8162103 TAATTTA-TATATATTTT
1 TAATTTACTAT-TATTTT
8162120 AATAAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (17 bp):
TAATTTACTATTATTTT
Found at i:8165478 original size:20 final size:21
Alignment explanation
Indices: 8165429--8165479 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
8165419 CTATTTTGAG
8165429 TATATGTATTT-AATATACATA
1 TATATGT-TTTGAATATACATA
8165450 TATATGTTTTGAATAT-CATA
1 TATATGTTTTGAATATACATA
8165470 TGATA-GTTTT
1 T-ATATGTTTT
8165480 ACTTGAGATA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
20 13 0.46
21 15 0.54
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.51
Consensus pattern (21 bp):
TATATGTTTTGAATATACATA
Found at i:8167820 original size:186 final size:187
Alignment explanation
Indices: 8167495--8167868 Score: 687
Period size: 186 Copynumber: 2.0 Consensus size: 187
8167485 AAGGGTAAAT
*
8167495 TGGTATTTTTCCTAATTTTATGAATTTAATATTCATTAGAGTAAATTTAGCATGAAAAATATCTA
1 TGGTAATTTTCCTAATTTTATGAATTTAATATTCATTAGAGTAAATTTAGCATGAAAAATATCTA
* *
8167560 AGTTTCATGCCGACTTATTCATCTTCTTCTCCAAAGTGTCGTGAGCTATACCAAGGTAAGGGAAA
66 AGTTTCATGCCAACTTATTCATCTTCTTCTCCAAAGTGCCGTGAGCTATACCAAGGTAAGGGAAA
*
8167625 AACATTTGTTTTCCA-TTTTAAGCCATTTTCTTTGGATTCCAAGTTATGCTATGAAA
131 AACATTTGTTTTCCACTTTTAAGCCATTTCCTTTGGATTCCAAGTTATGCTATGAAA
8167681 TGGTAATTTTCCTAATTTTATGAATTTAATATTCATTAGAGTAAATTTAGCATGAAAAATATCTA
1 TGGTAATTTTCCTAATTTTATGAATTTAATATTCATTAGAGTAAATTTAGCATGAAAAATATCTA
8167746 AGTTTCATGCCAACTTATTCATCTTCTTCTCCAAAGTGCCGTGAGCTATACCAAGGTAAGGGAAA
66 AGTTTCATGCCAACTTATTCATCTTCTTCTCCAAAGTGCCGTGAGCTATACCAAGGTAAGGGAAA
* *
8167811 AATATTTGTTTTCCACTTTTAAGCCATTTCCTTTGGATTTCAAGTTATGCTATGAAA
131 AACATTTGTTTTCCACTTTTAAGCCATTTCCTTTGGATTCCAAGTTATGCTATGAAA
8167868 T
1 T
8167869 ATGAAAGTGA
Statistics
Matches: 181, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
186 141 0.78
187 40 0.22
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (187 bp):
TGGTAATTTTCCTAATTTTATGAATTTAATATTCATTAGAGTAAATTTAGCATGAAAAATATCTA
AGTTTCATGCCAACTTATTCATCTTCTTCTCCAAAGTGCCGTGAGCTATACCAAGGTAAGGGAAA
AACATTTGTTTTCCACTTTTAAGCCATTTCCTTTGGATTCCAAGTTATGCTATGAAA
Found at i:8169335 original size:40 final size:40
Alignment explanation
Indices: 8169275--8169358 Score: 125
Period size: 40 Copynumber: 2.1 Consensus size: 40
8169265 TGTGTAAGGA
8169275 CACTCAGGTGCATATGGTGGGCACGAA-CTTATATATAATG
1 CACTCAGGTGCATATGGTGGGCAC-AACCTTATATATAATG
* * *
8169315 CACTGAGGTGCATATGGTGGGCACAACCTTATGTGTAATG
1 CACTCAGGTGCATATGGTGGGCACAACCTTATATATAATG
8169355 CACT
1 CACT
8169359 ACGATATATA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
39 2 0.05
40 38 0.95
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.27
Consensus pattern (40 bp):
CACTCAGGTGCATATGGTGGGCACAACCTTATATATAATG
Found at i:8169958 original size:21 final size:20
Alignment explanation
Indices: 8169933--8169974 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
8169923 CTATTTTGAG
8169933 TATATGTATTT-AATATACATA
1 TATAT-TATTTGAATAT-CATA
*
8169954 TATATTTTTTGAATATCATA
1 TATATTATTTGAATATCATA
8169974 T
1 T
8169975 GATAGTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (20 bp):
TATATTATTTGAATATCATA
Found at i:8169983 original size:21 final size:21
Alignment explanation
Indices: 8169944--8169983 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
8169934 ATATGTATTT
*
8169944 AATATACATATATATTTTTTG
1 AATATACATATATAGTTTTTG
8169965 AATAT-CATATGATAGTTTT
1 AATATACATAT-ATAGTTTT
8169984 ACTTGAGATC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.38, C:0.05, G:0.07, T:0.50
Consensus pattern (21 bp):
AATATACATATATAGTTTTTG
Found at i:8171185 original size:20 final size:20
Alignment explanation
Indices: 8171160--8171204 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
8171150 GAACATCACT
8171160 AATTGGAATATGTTAAATGC
1 AATTGGAATATGTTAAATGC
*
8171180 AATTGGAATATGTTAAATTC
1 AATTGGAATATGTTAAATGC
8171200 AATTG
1 AATTG
8171205 TAACATCCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.40, C:0.04, G:0.18, T:0.38
Consensus pattern (20 bp):
AATTGGAATATGTTAAATGC
Found at i:8171630 original size:24 final size:25
Alignment explanation
Indices: 8171603--8171657 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 25
8171593 TCTACTTTAC
*
8171603 TTTTTCTT-TTTCGAACAACTTCTT
1 TTTTTCTTCTTTCGAACAACTGCTT
* *
8171627 TTTTT-TTCTTTCGAACTACTGGTT
1 TTTTTCTTCTTTCGAACAACTGCTT
8171651 TTTTTCT
1 TTTTTCT
8171658 AGAGCATACA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
23 2 0.08
24 23 0.88
25 1 0.04
ACGTcount: A:0.13, C:0.18, G:0.07, T:0.62
Consensus pattern (25 bp):
TTTTTCTTCTTTCGAACAACTGCTT
Found at i:8175271 original size:20 final size:20
Alignment explanation
Indices: 8175216--8175285 Score: 79
Period size: 20 Copynumber: 3.5 Consensus size: 20
8175206 ATAGTATCGA
* *
8175216 TACTATTTATACAATATATG
1 TACTATTCATACAGTATATG
*
8175236 TACTATTCATATAGTATATG
1 TACTATTCATACAGTATATG
* * *
8175256 TACTATTCGTACAGTACA-A
1 TACTATTCATACAGTATATG
8175275 TACTATTCATA
1 TACTATTCATA
8175286 AAAACATTTT
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
19 10 0.24
20 32 0.76
ACGTcount: A:0.37, C:0.14, G:0.07, T:0.41
Consensus pattern (20 bp):
TACTATTCATACAGTATATG
Found at i:8179185 original size:17 final size:17
Alignment explanation
Indices: 8179147--8179188 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
8179137 GAGGGTTTTG
8179147 GTAAAAATGATTAAATA
1 GTAAAAATGATTAAATA
* *
8179164 ATAAAAAGTGATTTAA-A
1 GTAAAAA-TGATTAAATA
8179181 GTAAAAAT
1 GTAAAAAT
8179189 AAAGAAAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
16 1 0.05
17 13 0.62
18 7 0.33
ACGTcount: A:0.60, C:0.00, G:0.12, T:0.29
Consensus pattern (17 bp):
GTAAAAATGATTAAATA
Found at i:8179820 original size:21 final size:21
Alignment explanation
Indices: 8179791--8179830 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8179781 AACTTAAAAT
*
8179791 AAAAGAAAAATGAAAACTTGA
1 AAAAGAAAAAAGAAAACTTGA
* *
8179812 AAAATAAAAAAGAGAACTT
1 AAAAGAAAAAAGAAAACTT
8179831 TCATAAAACT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.68, C:0.05, G:0.12, T:0.15
Consensus pattern (21 bp):
AAAAGAAAAAAGAAAACTTGA
Found at i:8182150 original size:26 final size:26
Alignment explanation
Indices: 8182097--8182184 Score: 99
Period size: 26 Copynumber: 3.4 Consensus size: 26
8182087 CCAGAAAGCG
* * * *
8182097 CTGAGTAGATCTTCTAGACAACTGCCA
1 CTGACTAGACCTTATAGA-AACTACCA
*
8182124 CTGACTGGACCTTATAGAAACTACCA
1 CTGACTAGACCTTATAGAAACTACCA
*
8182150 CTGACTAGACCTTCTAGAAACTACCA
1 CTGACTAGACCTTATAGAAACTACCA
8182176 C-GA-TAGACC
1 CTGACTAGACC
8182185 GTTTCATGCC
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
24 6 0.11
25 2 0.04
26 32 0.59
27 14 0.26
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (26 bp):
CTGACTAGACCTTATAGAAACTACCA
Found at i:8192843 original size:16 final size:16
Alignment explanation
Indices: 8192815--8192855 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
8192805 TACAAATGAT
8192815 TTTAGTAAG-TTCAAAG
1 TTTA-TAAGTTTCAAAG
8192831 TTTATAAGTTTCAAAG
1 TTTATAAGTTTCAAAG
8192847 TTTATAAGT
1 TTTATAAGT
8192856 GGTATAAGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 4 0.17
16 20 0.83
ACGTcount: A:0.37, C:0.05, G:0.15, T:0.44
Consensus pattern (16 bp):
TTTATAAGTTTCAAAG
Found at i:8195961 original size:12 final size:12
Alignment explanation
Indices: 8195944--8195975 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
8195934 GAAACCATTG
8195944 CAACAAGAGTGT
1 CAACAAGAGTGT
8195956 CAACAAGAGTGT
1 CAACAAGAGTGT
8195968 CAACAAGA
1 CAACAAGA
8195976 ACAACACTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.47, C:0.19, G:0.22, T:0.12
Consensus pattern (12 bp):
CAACAAGAGTGT
Found at i:8203426 original size:18 final size:17
Alignment explanation
Indices: 8203399--8203454 Score: 80
Period size: 16 Copynumber: 3.4 Consensus size: 17
8203389 GTTTATGAGG
*
8203399 GAATTAGAATCTGTGAAT
1 GAATTGGAATCTGT-AAT
8203417 GAATTGGAATCTGTAA-
1 GAATTGGAATCTGTAAT
8203433 GAATTGGAATCTGTAAT
1 GAATTGGAATCTGTAAT
8203450 -AATTG
1 GAATTG
8203455 AAATTCAATT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
16 21 0.58
17 2 0.06
18 13 0.36
ACGTcount: A:0.38, C:0.05, G:0.23, T:0.34
Consensus pattern (17 bp):
GAATTGGAATCTGTAAT
Found at i:8204117 original size:36 final size:37
Alignment explanation
Indices: 8204035--8204117 Score: 116
Period size: 38 Copynumber: 2.2 Consensus size: 37
8204025 CCTAAACCCG
* *
8204035 AACCCAACCCGATCTGACCCGAATATCACATTTAAAAA
1 AACCCGACCCGATCTGACCCGAATATCACACTT-AAAA
8204073 AACCCGACCCGA-CTCGACCCGAATATCACACTT-AAA
1 AACCCGACCCGATCT-GACCCGAATATCACACTTAAAA
8204109 AACCCGACC
1 AACCCGACC
8204118 TGACCCGAAC
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
36 12 0.29
37 2 0.05
38 28 0.67
ACGTcount: A:0.39, C:0.37, G:0.10, T:0.14
Consensus pattern (37 bp):
AACCCGACCCGATCTGACCCGAATATCACACTTAAAA
Found at i:8204387 original size:152 final size:155
Alignment explanation
Indices: 8204143--8204471 Score: 522
Period size: 153 Copynumber: 2.1 Consensus size: 155
8204133 AAAGTTTCAT
*
8204143 CCGACCCGACCCAAATATATAAATTAGAAATCCGACCCGACCCGACCCGAAATAATAAAAAAAAT
1 CCGACCCGACCCGAATATATAAATTAGAAAT----CCCGACCCGACCCGAAATAATAAAAAAAAT
8204208 ATTTTTATTTAATAAAAACAATGACTTAATCCGACCCGACCCGAA-T-TATATATTTTCGGGTCG
62 ATTTTTATTTAATAAAAACAATGACTTAATCCGACCCGACCCGAATTATATATATTTTCGGGTCG
* *
8204271 GTCTGGTTTTTTTTCACCCTAAACCCGAAC
127 GTCCGG-TTTTTTTCACCATAAACCCGAAC
* * *
8204301 CCGACCCAACCCGAATATATGAATTAGAAAT-CCGACCCGACCCGAAATAAT-AAAAAATTATTT
1 CCGACCCGACCCGAATATATAAATTAGAAATCCCGACCCGACCCGAAATAATAAAAAAAATATTT
8204364 TTATTTAATAAAAACAATGACTTAATCCGACCCGACCCGAATTATATATATTTTCGGGTCGGTCC
66 TTATTTAATAAAAACAATGACTTAATCCGACCCGACCCGAATTATATATATTTTCGGGTCGGTCC
*
8204429 GGTTTTTTTCACCATAAACCTGAAC
131 GGTTTTTTTCACCATAAACCCGAAC
8204454 CCGACCCGACCCGAATAT
1 CCGACCCGACCCGAATAT
8204472 CACACTTAAA
Statistics
Matches: 161, Mismatches: 8, Indels: 9
0.90 0.04 0.05
Matches are distributed among these distances:
152 52 0.32
153 59 0.37
154 22 0.14
158 28 0.17
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (155 bp):
CCGACCCGACCCGAATATATAAATTAGAAATCCCGACCCGACCCGAAATAATAAAAAAAATATTT
TTATTTAATAAAAACAATGACTTAATCCGACCCGACCCGAATTATATATATTTTCGGGTCGGTCC
GGTTTTTTTCACCATAAACCCGAAC
Found at i:8207778 original size:77 final size:77
Alignment explanation
Indices: 8207641--8207790 Score: 248
Period size: 77 Copynumber: 1.9 Consensus size: 77
8207631 GTCTTTTCGC
*
8207641 GGTTTCGTTTAACCATATGAACTTAGATAACTAAGTTGGGTATCCATCATTAATTCCTCAACCAA
1 GGTTTCGTTTAACCATATGAACTTAGATAACTAAGTTGGGTATCCATCATGAATTCCTCAACCAA
8207706 TGGGCTTTCCAA
66 TGGGCTTTCCAA
* * *
8207718 GGTTTCTTTTGACCATATGAACTTAGATAACTAAGTTGGGTATCCA-CTATGAATTTCTCAACCA
1 GGTTTCGTTTAACCATATGAACTTAGATAACTAAGTTGGGTATCCATC-ATGAATTCCTCAACCA
8207782 ATGGGCTTT
65 ATGGGCTTT
8207791 AGACCCATCC
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
76 1 0.01
77 67 0.99
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (77 bp):
GGTTTCGTTTAACCATATGAACTTAGATAACTAAGTTGGGTATCCATCATGAATTCCTCAACCAA
TGGGCTTTCCAA
Found at i:8207807 original size:77 final size:77
Alignment explanation
Indices: 8207652--8207807 Score: 197
Period size: 77 Copynumber: 2.0 Consensus size: 77
8207642 GTTTCGTTTA
* *
8207652 ACCATATGAACTTAGATAACTAAGTTGGGTATCCATCATTAATTCCTCAACCAATGGGCTTTCCA
1 ACCATATGAACTTAGATAACTAAGTTGGGTATCCATCATGAATTCCTCAACCAATGGGCTTTACA
*** * **
8207717 AGGTTTCTTTTG
66 ACCATCCCCTTG
* *
8207729 ACCATATGAACTTAGATAACTAAGTTGGGTATCCA-CTATGAATTTCTCAACCAATGGGCTTTAG
1 ACCATATGAACTTAGATAACTAAGTTGGGTATCCATC-ATGAATTCCTCAACCAATGGGCTTTAC
*
8207793 ACCCATCCCCTTG
65 AACCATCCCCTTG
8207806 AC
1 AC
8207808 GAATCTAGGA
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
76 1 0.01
77 66 0.99
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.32
Consensus pattern (77 bp):
ACCATATGAACTTAGATAACTAAGTTGGGTATCCATCATGAATTCCTCAACCAATGGGCTTTACA
ACCATCCCCTTG
Found at i:8211031 original size:45 final size:44
Alignment explanation
Indices: 8210992--8211208 Score: 265
Period size: 45 Copynumber: 4.8 Consensus size: 44
8210982 AAATGAATGA
* *
8210992 ATAAATGAAATGCATAATAGTGCATTATCGGCATGAAATGATGAC
1 ATAAATGAAATGCATAA-CGTGCATTATCGGCATGAAATGATGCC
* *
8211037 ATAAATGAAATGCATAACGGTGC-TTATCGGTATGAAAGGATGCC
1 ATAAATGAAATGCATAAC-GTGCATTATCGGCATGAAATGATGCC
* * *
8211081 ATAAATGAAATGTATAACGATGCATTATCGACATGAAAGGATGCC
1 ATAAATGAAATGCATAACG-TGCATTATCGGCATGAAATGATGCC
*
8211126 ATAAATGAAGTGCATAACGATGCATTATCGGCATGAAATGATGCC
1 ATAAATGAAATGCATAACG-TGCATTATCGGCATGAAATGATGCC
* * **
8211171 ATAAATGAAAATACATAATGGTGCATTATAAGCATGAA
1 ATAAATG-AAATGCATAA-CGTGCATTATCGGCATGAA
8211209 CGAATGCCAT
Statistics
Matches: 151, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
43 1 0.01
44 38 0.25
45 88 0.58
46 23 0.15
47 1 0.01
ACGTcount: A:0.41, C:0.12, G:0.21, T:0.25
Consensus pattern (44 bp):
ATAAATGAAATGCATAACGTGCATTATCGGCATGAAATGATGCC
Found at i:8211090 original size:89 final size:90
Alignment explanation
Indices: 8210992--8211208 Score: 285
Period size: 89 Copynumber: 2.4 Consensus size: 90
8210982 AAATGAATGA
* *
8210992 ATAAATGAAATGCATAATAGTGCATTATCGGCATGAAATGATGACATAAATGAAATGCATAACGG
1 ATAAATGAAATGCATAATAGTGCATTATCGGCATGAAAGGATGACATAAATGAAATGCATAACGA
*
8211057 TGC-TTATCGGTATGAAAGGATGCC
66 TGCATTATCGGCATGAAAGGATGCC
* * * * *
8211081 ATAAATGAAATGTATAA-CGATGCATTATCGACATGAAAGGATGCCATAAATGAAGTGCATAACG
1 ATAAATGAAATGCATAATAG-TGCATTATCGGCATGAAAGGATGACATAAATGAAATGCATAACG
*
8211145 ATGCATTATCGGCATGAAATGATGCC
65 ATGCATTATCGGCATGAAAGGATGCC
* * **
8211171 ATAAATGAAAATACATAATGGTGCATTATAAGCATGAA
1 ATAAATG-AAATGCATAATAGTGCATTATCGGCATGAA
8211209 CGAATGCCAT
Statistics
Matches: 109, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
88 1 0.01
89 59 0.54
90 26 0.24
91 22 0.20
92 1 0.01
ACGTcount: A:0.41, C:0.12, G:0.21, T:0.25
Consensus pattern (90 bp):
ATAAATGAAATGCATAATAGTGCATTATCGGCATGAAAGGATGACATAAATGAAATGCATAACGA
TGCATTATCGGCATGAAAGGATGCC
Done.